dsi_19563

Name	Class	Family	Strand
Helitron-2_DVir	RC	Helitron	+

CATGTGAGGATGGCTTTAATTGAGTTTTAAGTGGATTGCGTCTACCGAAGGTGATTATTGAATATCTTTCAATTGAGTAAAGCTTTTCAGCTTTAATTGAGTTTTAAGTGGATTGCGTCTACCGAAGGTGATTATTGAATATCTCTGATGTCTTTCTAGTTGAAATGTTTTTGCACGGGAATAGTTTTGTATTTTTCGATTATTATGACAGCTATATGATATGGTGGTCCAATCCGGTCTGTTCCGACTAATATACTGTAC *************************************************************************************************.(((((((.((((..(((((.......((.(((........))).)))))))...)))).))))))).........((((((...........))))))........*****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	O001 Testis	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
................................................................................................................................................................................................................................................GTTCCGACTAATATACTG...	18	0	1	2.00	2	2	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................AAACCAGTCTGTTCCGACT............	19	2	1	1.00	1	0	0	1	0	0	0	0	0
............................................................................................................................................................................................GTATTTTTCGATTATTAT.......................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0
......................AGTTTTAAGTGGATTGCG.............................................................................................................................................................................................................................	18	0	2	0.50	1	0	1	0	0	0	0	0	0
...................................................................................................AGTTTTAAGTGGATTGCG................................................................................................................................................	18	0	2	0.50	1	0	1	0	0	0	0	0	0
........................................................................................................................................................................................TTTTGTATTTTTCGATA............................................................	17	1	8	0.13	1	0	0	1	0	0	0	0	0
................TAAATGAGTTTTTAGTGGA..................................................................................................................................................................................................................................	19	2	9	0.11	1	0	0	0	0	1	0	0	0
.............................................................................................TAAATGAGTTTTTAGTGGA.....................................................................................................................................................	19	2	9	0.11	1	0	0	0	0	1	0	0	0
.............................................................................................................................................................AGTTGAAATGTTTGTG........................................................................................	16	1	11	0.09	1	0	1	0	0	0	0	0	0
....TGAGGATGGCTTAAA..................................................................................................................................................................................................................................................	15	1	13	0.08	1	0	0	0	0	0	0	1	0
........................................................................................................................................GAATACCTCAGATGTCTGT..........................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0	0	0
.........................................................................................................CCGTGGATTGCGTCTAGC..........................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	1	0	0
............................CCGTGGATTGCGTCTAGC.......................................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	1	0	0
..............................................................................................................................................................GTTGAAATGTTTGTG........................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	1
..........................................................................................................................................................TCTAGTTGTAATGTT............................................................................................	15	1	20	0.05	1	0	1	0	0	0	0	0	0

GTACACTCCTACCGAAATTAACTCAAAATTCACCTAACGCAGATGGCTTCCACTAATAACTTATAGAAAGTTAACTCATTTCGAAAAGTCGAAATTAACTCAAAATTCACCTAACGCAGATGGCTTCCACTAATAACTTATAGAGACTACAGAAAGATCAACTTTACAAAAACGTGCCCTTATCAAAACATAAAAAGCTAATAATACTGTCGATATACTATACCACCAGGTTAGGCCAGACAAGGCTGATTATATGACATG *****************************************************.(((((((.((((..(((((.......((.(((........))).)))))))...)))).))))))).........((((((...........))))))........*************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR553488 RT_0-2 hours eggs	M023 head	M024 male body	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
.................................................................................................................................................................................CCTTATCAAAACATAAAA..................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................ACCACCAAGTTAGGCCCTA.....................	19	3	16	0.31	5	0	0	3	0	2	0	0
.................................................................................................................................................................................................................................CCAGGTAAGGCCAGAAAA..................	18	2	6	0.17	1	0	0	0	1	0	0	0
..........................AACTCAGCTTACGCAGATGG.......................................................................................................................................................................................................................	20	3	7	0.14	1	0	1	0	0	0	0	0
.......................................................................................................AACTCAGCTTACGCAGATGG..........................................................................................................................................	20	3	7	0.14	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................AGACAAGGCTGATTCG........	16	2	20	0.05	1	0	0	0	0	0	0	1
.............................................................................................................................................................................................................................ACCATCAGGTTGGGCC........................	16	2	20	0.05	1	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	3r:14020496-14020756 -	dsi_19563	CATGTGAGGATGGCTTTAAT---T----------------------------GAG-----TTTTAAGTGGATTGCGTCT-ACCGAAGGTGATTATTGAATATC--TTTCA------------------------------ATTGAGTAAAGCTTTTCAGCTTTAATTGAGTTT--TAAGT---------------------------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------GATTGCGTCTACCGAA---------------------GGTGA-TTATTGAATATCTCTGATGTCTT-TCTAGTTGAAATGTT---------------------------------------------------------------TTTGCACGGGAATAGTTTTGT---------------------------------------ATTTTTC-------GAT---------------TATTATG----------------------ACAGC------------------------TATATGATATGGTGGTCCAATCCGGTCTGTTCCGACTA---------------------ATATAC---------TGTA--C------
droSec2	scaffold_0:14881864-14882061 -		CATGTGAGGATGGCTTTAAT---T----------------------------GAG-----TTTTAAGTGGATTGCGTCT-ACCGAAGGTGATTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATATCTCTGATGTCTT-TCCAGTTGAAATGTTTTGGTTGA-----------------------------------------------AATGTT--TTTGCACGGGAATAGTTTTGT---------------------------------------ATTTTTC-------GAT---------------TATTATG----------------------ACAGC------------------------TATATGATATGGTGGTCCAATCCGGTCTGTTCCGACTA---------------------ATATAC---------TGTA--C------
dm3	chr3R:7072757-7072915 +		CATGTGAGTATGGCTTTAAT---T----------------------------GAG-----TTTTAAGTGGATTGCGTCT-AGCGAAGGTGATTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATCTCTGATGGCTT-------------------------------------------------------------------------------TTTGCACGGGAATAGTTTTGT---------------------------------------ATTTTTC-------GAT---------------TATTAT--------------------------------------------------------TATTAATTTGGTCCCATCCGGTCTGTTCCGACTA---------------------ATATAC---------TGTA--C------
droEre2	scaffold_4770:14547242-14547424 -		CATGCGAGGATGACTTTA-T---C----------------------------GAG-----TTA-ACATGGCTTGTGTCT-ACCGAAGGTCGCACTT----------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGAAATTTT--TG-----------------------------------------------------------TTAGCAAGCGAATAGTTCTGTTGAATTTGTTAAAAAACTTAAAGCGACGCTGAACTGAAAATTTATT-------GAG--------------------------------------------------------------------------------TATAGCTACATATAGCAAAATGACTTTCTTA---------------------ATGAGC---------TCTA--A------
droYak3	3L:19652267-19652336 +		ATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC-------GAT----------------TATTAA----------------------GCAGC------------------------TATTTAATATAGTTTTCCAAGCCGGTCTGTTCCGATGT---------------------ATATAC---------TACC--A------
droEug1	scf7180000409797:691675-691760 +		CATGTGAGGTTGGCACT------------------------------TGAATGAA-----TTTACAGTAGAGTGCGGTT-ATCGAAGGCGAATATA-------------------------------------------TC----------------------------------------------------------------------------------------------------------------------------T-TAT------------------------------------------------------------------------------------------------------------------------------------------------------GCAAACTTGTGAAAGTTT-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------
droBia1	scf7180000301924:1716-1980 +		CGATT----ATAGTTATAAT---A----------------------------GAT-----GTTTATATGTACAATTTGT-ATCG--------------------------------------------------------------------------------GTA------------------------------------------------AGGCGGGAATTTTAGTCCTTTGATGG-AATGGTTTGGT-----GGT-------------------------------------------CTTTTATCGTGTTTTAAAGTTTGACATATTTCTCAATTATTTATTTTTTGTTTCAAATAAGGAAAATGGA--GTGTTCTTTTAA---------------------GGTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAA----------------------GAGTCTCCTTAATATCACGATGCTTGTTTTTAATGTGATAGTTGTCCGATCTGGCTGGTTCCGACTC---------------------ATATACAATAGAAAGAAG-------ACT
droTak1	scf7180000415202:21747-21964 +		ATTGAATA---------------------------------------------TA-----TTTAAAAA---------------------------------------------------------------------------AAAGAAAGGATTTTAACTTCGGCC------------------------------------------------AGCCGAAGTTTATATACCCTTGCAAA-TATGCCTACCTAAAATGTTGTTTTT------------------------------------ACA--------------------------------------------------------------------TTGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATCAAAAAGCCTACTTTCTATAAAGTTTTTTC-------TATTATTTTGTTAATTATTCCTATG----------------------GCAGC------------------------CATAAGATATAGTGGTCCGATCCGGCTCGTTCCGACAT---------------------ATGTAC---------TACCTGC------
droEle1	scf7180000490218:3111-3380 -		CATCTAAATATCGATTTATT---A----------------------------GCGTATATTTTTAAATT-ATTAC-TAT-TCCTATGGTAGTTATATAATATCGATTTCTGATGGTAATAAAATTAAAAACGTAATTCTGATTTATTAAACCATTACTA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTAAAC------------------------------------------------------------------------------------------GG-TTTTTAAATATTT--------------GTTATTAGTATTTTGATAGTTCTAATGCGATTTTTTTTTCA------------------------------TTTT------------------------------------------------------------TATTTGC-------G------------ATTGTTCCTATG----------------------GGAGC------------------------TATATGGTATAGTCGCCCGATCCAGCTCGTGCCGACTC---------------------ATATAC---------TACCTGC------
droRho1	scf7180000775449:3759-4043 -		CATTTTAAAATGCGTTTGAAATGT----------------------------AAT-----TATGGAATGGACTACATTT-ATCGAAATTGAATAAAAAAAAA------CA------------------------------ACATGGCGGCGTTTTTAAAATTTAGT--------------------------------------------------------------------------------------------GTCGTTTT-TACAGAAATTTTCTTAATTTTTTTGTCGATAAAAAA----------------------------------------------------------------------------------------------------------GGC-AATCTATAAGCATC---AATGTAAT-TCTAGTTTA------------------------------TTCCATGGACAATTTAAAAACACCAAAGTTGT-----GG------------------------------------------------------------CATTTCC-------AAT--------CGTTCAGTTATATG----------------------GCAGC------------------------TATAGGATATAGTCGGCCGATCCCGGCCGTTCCGACTT---------------------ATATAC---------AGCG---------
droFic1	scf7180000452333:14427-14600 +		TAGAGTTATCCGATTT-------------------------------TGATCAAA-----TTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAAA-----------------TTC----AATCTT-GAAGAATTC--AAGTCGA-TCTGATTAAAA-----------------------------------------------ACAACGGAGTGAAATTTT---------------------TT---------------------------------------TTTTTT-------------------CAATCTCTCGTATG----------------------GGAGC------------------------TATCCGATATAGTCGGCCGATCCGGCTCGTTCCGACTT---------------------ATATAC---------TGCGTGCAATAAC
droKik1	scf7180000302724:237993-238176 +		ACTCAAGAGCTTGAAAT------------------------------TGAGCAAT-----CTCAGC----------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAAATCATCTCTACAAGTGAGA----ACTTAT-TAAAACTTATGATATCTT-TAT------------------------------------------------------------------------------------------------------------------------------------------------------AT--------AATTTAGATATATGAATGGTTTTTAGGTAGGATAGTAGGGC------------------------GTAGTGATATAGTCGTCAGATCCGGCCCGTTCCGACAT---------------------ATATAG--C------AGTG-AGAGTATA
droAna3	scaffold_13339:2602321-2602527 +		ATTATTAGATA---TATAAC---GGATCGTATATAGTCGGCCGATCTTTATGAAA-----TTTGGA----------------------------------------------------------------------------------------------------------------AT------------------------------------------------------------------------------ATCG--------------------------------------------------------------------------------------------------------------AATTATTTTTCCCAAA-----------------GAGC----ATTCATTGAAAATCCC----ATCCT-TTTAACT---------TAAAAA------------------------------------ACAACGAAGTTAT-----GG------------------------------------------------------------CATTTCC-------GAT--------CAATCAGTTATATG----------------------GGAGC------------------------TATAGGATATATTCAACCGATCCCGGCCGTTCCGACTT---------------------ATATAC---------TGCC---------
droBip1	scf7180000395705:1760-2024 -		TTTAATAGTATTTTTTTGAT---A----------------------------TAT-----TTTTAGATA-TTTGTGTGTAATCAAAATGGAATATA-------------------------------------------TATTTAACAAACCTTTCCAACG-AAATAAAGTATTGTAGGTAGTTTCATTGCTTAGAAAGTTATTTATTTTATTATTTACAAGCTTTTTATACCCTTGCAGAGGGTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTT-----------------------TGTCCA--------------------AAAGTGT------G------------------------------------------------------------CATTTCC-------GAT--------CAATCAGTTATATG----------------------GCAGC------------------------TATAGGATATAGTCGGCCGATCCGGGCCGTTCCGACTT---------------------ATATAC---------TGCG---------
droWil2	scf2_1100000004930:214133-214276 +		TATTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCT---------------------------CAGAAAACAAAA-A-AGTTTTTGAGAAA--------------------AGTT----------AC------------------T---------------------------------------GTTCGTGACTTTGCG---------------GTTTGAATG----------------------GGAGC------------------------TATATGATATAGTGGTCCGATCCGGCTGAATCCGAGATAACCGAGACAACCCCTGCAGTATATAC---------AAGC--C------
droVir3	scaffold_12723:1975694-1975921 -		TTGGGCACGCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCTAATACCCTTGCAGACTGAACCTTTTCATAATGCTCATAGT------------------------------------GCT--------------------------------------------------------------------TTACCCGTATCTAA---------------------GAAGC-ACAGGGAAAATAGTTAATGCCGAGTTTGGTGAAAATATCTTGATAAACAGAA-A-AGTTTTCCATCCA---------------------------------G------------------------------------------------------------GATTTTC-------GAC--------CGATCATTCCTATG----------------------GCAGC------------------------TATATGATATAGTGGTCCGATCCAGCTGGTTTTGACAT---------------------GTGTGC---------TGCGTGC------
droGri2	scaffold_15110:4252202-4252348 -		ATCGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCCTTGTTTAG--TTCAGTTGGAATATTCTGGTTAACAAAG-A-AGTAGTTCATACA--------------------AGAA----------CA------------------C---------------------------------------ATCTTTC-------AAA--------TGATAGTTCCTCTG----------------------ACAAC------------------------TATATGATATAGTGATTCGATCCGGCCTGTTCAGCAAA---------------------AGGGCG---------GGTG--C------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CATGTGAGGATGGCTTTAAT---T----------------------------GAG-----TTTTAAGTGGATTGCGTCT-ACCGAAGGTGATTATTGAATATC--TTTCA------------------------------ATTGAGTAAAGCTTTTCAGCTTTAATTGAGTTT--TAAGT---------------------------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------GATTGCGTCTACCGAA---------------------GGTGA-TTATTGAATATCTCTGATGTCTT-TCTAGTTGAAATGTT---------------------------------------------------------------TTTGCACGGGAATAGTTTTGT---------------------------------------ATTTTTC-------GAT---------------TATTATG----------------------ACAGC------------------------TATATGATATGGTGGTCCAATCCGGTCTGTTCCGACTA---------------------ATATAC---------TGTA--C------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGACTA---------------------ATATAC---------TG...........	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------------------------------------ATTTTTC-------GAT---------------TATTAT...........................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AG-----TTTTAAGTGGATTGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................AGTTT--TAAGT---------------------------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------GATTGCG.......................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGT---------------------------------------ATTTTTC-------GAT---------------A................................................................................................................................................	17	8	0.13	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

CATGTGAGGATGGCTTTAAT---T----------------------------GAG-----TTTTAAGTGGATTGCGTCT-ACCGAAGGTGATTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATATCTCTGATGTCTT-TCCAGTTGAAATGTTTTGGTTGA-----------------------------------------------AATGTT--TTTGCACGGGAATAGTTTTGT---------------------------------------ATTTTTC-------GAT---------------TATTATG----------------------ACAGC------------------------TATATGATATGGTGGTCCAATCCGGTCTGTTCCGACTA---------------------ATATAC---------TGTA--C------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................GTGGATTGCGTCT-ACCGAAGGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTCCGACTA---------------------ATATAC---------TGTA--C------	23	1	1.00	1	1	0	0	0

dm3

CATGTGAGTATGGCTTTAAT---T----------------------------GAG-----TTTTAAGTGGATTGCGTCT-AGCGAAGGTGATTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATCTCTGATGGCTT-------------------------------------------------------------------------------TTTGCACGGGAATAGTTTTGT---------------------------------------ATTTTTC-------GAT---------------TATTAT--------------------------------------------------------TATTAATTTGGTCCCATCCGGTCTGTTCCGACTA---------------------ATATAC---------TGTA--C------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCGACTA---------------------ATATAC---------T............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CATGCGAGGATGACTTTA-T---C----------------------------GAG-----TTA-ACATGGCTTGTGTCT-ACCGAAGGTCGCACTT----------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGAAATTTT--TG-----------------------------------------------------------TTAGCAAGCGAATAGTTCTGTTGAATTTGTTAAAAAACTTAAAGCGACGCTGAACTGAAAATTTATT-------GAG--------------------------------------------------------------------------------TATAGCTACATATAGCAAAATGACTTTCTTA---------------------ATGAGC---------TCTA--A------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................ATGGCTTGTGTCT-ACCGAAGGTCGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAAAAAACTTAAAGCGACGCT..........................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTTT--TG-----------------------------------------------------------TTAGCAAGCGAATAGTT............................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
..TGCGAGGATGACTTTA-T---C----------------------------GAG-----TTA-ACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTCTGTTGAATTTGTTAAAAAACT......................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..........................................................................TGTCT-ACCGAAGGTCGCACTT----------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT....................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAATAGTTCTGTTGAAT...................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTAAAGCGACGCTGAACTGAAAA................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
....................................................................GGCTTGTGTCT-ACCGAAGGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTATT-------GAG--------------------------------------------------------------------------------TATAGCTAC.......................................................................	20	1	1.00	1	0	0	0	0	0	1	0

droYak3

ATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC-------GAT----------------TATTAA----------------------GCAGC------------------------TATTTAATATAGTTTTCCAAGCCGGTCTGTTCCGATGT---------------------ATATAC---------TACC--A------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

CATGTGAGGTTGGCACT------------------------------TGAATGAA-----TTTACAGTAGAGTGCGGTT-ATCGAAGGCGAATATA-------------------------------------------TC----------------------------------------------------------------------------------------------------------------------------T-TAT------------------------------------------------------------------------------------------------------------------------------------------------------GCAAACTTGTGAAAGTTT-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGATT----ATAGTTATAAT---A----------------------------GAT-----GTTTATATGTACAATTTGT-ATCG--------------------------------------------------------------------------------GTA------------------------------------------------AGGCGGGAATTTTAGTCCTTTGATGG-AATGGTTTGGT-----GGT-------------------------------------------CTTTTATCGTGTTTTAAAGTTTGACATATTTCTCAATTATTTATTTTTTGTTTCAAATAAGGAAAATGGA--GTGTTCTTTTAA---------------------GGTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAA----------------------GAGTCTCCTTAATATCACGATGCTTGTTTTTAATGTGATAGTTGTCCGATCTGGCTGGTTCCGACTC---------------------ATATACAATAGAAAGAAG-------ACT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATTGAATA---------------------------------------------TA-----TTTAAAAA---------------------------------------------------------------------------AAAGAAAGGATTTTAACTTCGGCC------------------------------------------------AGCCGAAGTTTATATACCCTTGCAAA-TATGCCTACCTAAAATGTTGTTTTT------------------------------------ACA--------------------------------------------------------------------TTGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATCAAAAAGCCTACTTTCTATAAAGTTTTTTC-------TATTATTTTGTTAATTATTCCTATG----------------------GCAGC------------------------CATAAGATATAGTGGTCCGATCCGGCTCGTTCCGACAT---------------------ATGTAC---------TACCTGC------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CATCTAAATATCGATTTATT---A----------------------------GCGTATATTTTTAAATT-ATTAC-TAT-TCCTATGGTAGTTATATAATATCGATTTCTGATGGTAATAAAATTAAAAACGTAATTCTGATTTATTAAACCATTACTA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTAAAC------------------------------------------------------------------------------------------GG-TTTTTAAATATTT--------------GTTATTAGTATTTTGATAGTTCTAATGCGATTTTTTTTTCA------------------------------TTTT------------------------------------------------------------TATTTGC-------G------------ATTGTTCCTATG----------------------GGAGC------------------------TATATGGTATAGTCGCCCGATCCAGCTCGTGCCGACTC---------------------ATATAC---------TACCTGC------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CATTTTAAAATGCGTTTGAAATGT----------------------------AAT-----TATGGAATGGACTACATTT-ATCGAAATTGAATAAAAAAAAA------CA------------------------------ACATGGCGGCGTTTTTAAAATTTAGT--------------------------------------------------------------------------------------------GTCGTTTT-TACAGAAATTTTCTTAATTTTTTTGTCGATAAAAAA----------------------------------------------------------------------------------------------------------GGC-AATCTATAAGCATC---AATGTAAT-TCTAGTTTA------------------------------TTCCATGGACAATTTAAAAACACCAAAGTTGT-----GG------------------------------------------------------------CATTTCC-------AAT--------CGTTCAGTTATATG----------------------GCAGC------------------------TATAGGATATAGTCGGCCGATCCCGGCCGTTCCGACTT---------------------ATATAC---------AGCG---------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TAGAGTTATCCGATTT-------------------------------TGATCAAA-----TTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAAA-----------------TTC----AATCTT-GAAGAATTC--AAGTCGA-TCTGATTAAAA-----------------------------------------------ACAACGGAGTGAAATTTT---------------------TT---------------------------------------TTTTTT-------------------CAATCTCTCGTATG----------------------GGAGC------------------------TATCCGATATAGTCGGCCGATCCGGCTCGTTCCGACTT---------------------ATATAC---------TGCGTGCAATAAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACTCAAGAGCTTGAAAT------------------------------TGAGCAAT-----CTCAGC----------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAAATCATCTCTACAAGTGAGA----ACTTAT-TAAAACTTATGATATCTT-TAT------------------------------------------------------------------------------------------------------------------------------------------------------AT--------AATTTAGATATATGAATGGTTTTTAGGTAGGATAGTAGGGC------------------------GTAGTGATATAGTCGTCAGATCCGGCCCGTTCCGACAT---------------------ATATAG--C------AGTG-AGAGTATA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATTATTAGATA---TATAAC---GGATCGTATATAGTCGGCCGATCTTTATGAAA-----TTTGGA----------------------------------------------------------------------------------------------------------------AT------------------------------------------------------------------------------ATCG--------------------------------------------------------------------------------------------------------------AATTATTTTTCCCAAA-----------------GAGC----ATTCATTGAAAATCCC----ATCCT-TTTAACT---------TAAAAA------------------------------------ACAACGAAGTTAT-----GG------------------------------------------------------------CATTTCC-------GAT--------CAATCAGTTATATG----------------------GGAGC------------------------TATAGGATATATTCAACCGATCCCGGCCGTTCCGACTT---------------------ATATAC---------TGCC---------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTTCCGACTT---------------------ATATAC---------TG...........	21	20	0.15	3	3	0	0	0	0	0
..................AC---GGATCGTATATAGTCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	3
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAA------------------------------------ACAACGAAGTTAT-----GG------------------------------------------------------------C................................................................................................................................................................................	22	20	0.15	3	0	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------CAATCAGTTATATG----------------------GGAGC------------------------TATAGG.................................................................................	26	12	0.08	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------CAATCAGTTATATG----------------------GGAGC------------------------TATAG..................................................................................	25	13	0.08	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCC-------GAT--------CAATCAGTTATATG----------------------GGAGC------------------------TA.....................................................................................	28	15	0.07	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC-------GAT--------CAATCAGTTATATG----------------------GGAGC------------------------.......................................................................................	25	16	0.06	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCC-------GAT--------CAATCAGTTATATG----------------------GGAGC------------------------.......................................................................................	26	16	0.06	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTTAT-----GG------------------------------------------------------------CATTTCC-------G..................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
.............................TATATAGTCGGCCGATCTTTATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA------------------------------------ACAACGAAGTTAT-----GG------------------------------------------------------------CAT..............................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCC-------GAT--------CAATCAGTTATATG----------------------G...................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGAAGTTAT-----GG------------------------------------------------------------CATTTCC-------...................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------ACAACGAAGTTAT-----GG------------------------------------------------------------CATTTCC-------GA.................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATG----------------------GGAGC------------------------TATAGGAT...............................................................................	20	20	0.05	1	1	0	0	0	0	0

droBip1

TTTAATAGTATTTTTTTGAT---A----------------------------TAT-----TTTTAGATA-TTTGTGTGTAATCAAAATGGAATATA-------------------------------------------TATTTAACAAACCTTTCCAACG-AAATAAAGTATTGTAGGTAGTTTCATTGCTTAGAAAGTTATTTATTTTATTATTTACAAGCTTTTTATACCCTTGCAGAGGGTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTT-----------------------TGTCCA--------------------AAAGTGT------G------------------------------------------------------------CATTTCC-------GAT--------CAATCAGTTATATG----------------------GCAGC------------------------TATAGGATATAGTCGGCCGATCCGGGCCGTTCCGACTT---------------------ATATAC---------TGCG---------	Size	Hit Count	Total Norm	Total
No Reads

droWil2

TATTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCT---------------------------CAGAAAACAAAA-A-AGTTTTTGAGAAA--------------------AGTT----------AC------------------T---------------------------------------GTTCGTGACTTTGCG---------------GTTTGAATG----------------------GGAGC------------------------TATATGATATAGTGGTCCGATCCGGCTGAATCCGAGATAACCGAGACAACCCCTGCAGTATATAC---------AAGC--C------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AC------------------T---------------------------------------GTTCGTGACTTTGCG---------------GTTTGAA............................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACCCCTGCAGTATATAC---------A............	22	2	0.50	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGATATAGTGGTCCGATC.................................................................	22	20	0.25	5	0	5	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTGGTCCGATCCGGCTG...........................................................	21	20	0.20	4	0	4	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAATG----------------------GGAGC------------------------TATATGATATAGT..........................................................................	26	13	0.08	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAATG----------------------GGAGC------------------------TATATG.................................................................................	19	18	0.06	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTCCGATCCGGCTGAA.........................................................	20	20	0.05	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGGTCCGATCCGGCTGAATCCG.....................................................	25	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTGGTCCGATCCGGCTGAATCC......................................................	26	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGATCCGGCTGAATCCGAGATA................................................	26	20	0.05	1	0	1	0	0	0

droVir3

TTGGGCACGCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATCTAATACCCTTGCAGACTGAACCTTTTCATAATGCTCATAGT------------------------------------GCT--------------------------------------------------------------------TTACCCGTATCTAA---------------------GAAGC-ACAGGGAAAATAGTTAATGCCGAGTTTGGTGAAAATATCTTGATAAACAGAA-A-AGTTTTCCATCCA---------------------------------G------------------------------------------------------------GATTTTC-------GAC--------CGATCATTCCTATG----------------------GCAGC------------------------TATATGATATAGTGGTCCGATCCAGCTGGTTTTGACAT---------------------GTGTGC---------TGCGTGC------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATCCAGCTGGTTTTGACAT---------------------GTG.........................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCTTGATAAACAGAA-A-AGTTT.......................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTTAATGCCGAGTTTGGTGA...................................................................................................................................................................................................................................................................................................................	25	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................AATGCTCATAGT------------------------------------GCT--------------------------------------------------------------------TTACCCG.....................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................ATAATGCTCATAGT------------------------------------GCT--------------------------------------------------------------------TTACCCG.....................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCTGGTTTTGACAT---------------------GTGTG.......................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TTCATAATGCTCATAGT------------------------------------GCT--------------------------------------------------------------------TTACCCG.....................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATCCAGCTGGTTTTGACAT---------------------GTGT........................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATCTTGATAAACAGAA-A-AGTTT.......................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCTTGATAAACAGAA-A-AGTTTT......................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCTGGTTTTGACAT---------------------GTGTGT---------.............	24	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCTTGATAAACAGAA-A-AGTTTTC.....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATAAACAGAA-A-AGTTTTCCATCCA---------------------------------G------------------------------------------------------------.................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGCCGAGTTTGGTGAAAA................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATCCAGCTGGTTTTGACAT---------------------G...........................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATAAACAGAA-A-AGTTTTCCATC.................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATCCAGCTGGTTTTGACAT---------------------GT..........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCTTGATAAACAGAA-A-AGT.........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAACAGAA-A-AGTTTTCCATCC................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTAATGCCGAGTTTGGTGAAAA................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGAGTTTGGTGAAAATATCTTGA........................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAATATCTTGATAAACAGAA-A-AG..........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA---------------------------------G------------------------------------------------------------GATTTTC-------GAC--------CGATCATTCC..............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATATCTTGATAAACAGAA-A-AGTTT.......................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................AATGCTCATAGT------------------------------------GCT--------------------------------------------------------------------TTACCCGT....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CTTGCAGACTGAACCTTTTCATAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAGCTGGTTTTGACAT---------------------G...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAACAGAA-A-AGTTTTCCATCTT---------------------------------..............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTTAATGCCGAGTTTGGTGAAA.................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAACAGAA-A-AGTTTTCCAT..................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACAGAA-A-AGTTTTCCATCCA---------------------------------G------------------------------------------------------------GATT.............................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACAGAA-A-AGTTTTCCATCCA---------------------------------G------------------------------------------------------------GAT..............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTAATGCCGAGTTTGGTGAAAATC..............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGCCGAGTTTGGTGAAA.................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TCATAATGCTCATAGT------------------------------------GCT--------------------------------------------------------------------TTACCCG.....................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCTGGTTTTGACAT---------------------GTGTGC---------.............	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATAAACAGAA-A-AGTTTTCCA...................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCTGGTTTTGACAT---------------------GTGTGT---------C............	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGAAAATATCTTGATC......................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTTGGTGAAAATATCTTGATA......................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGAGTTTGGTGAAAATATCTTG.........................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TAGT------------------------------------GCT--------------------------------------------------------------------TTACCCGTATCTAA---------------------GAAG.....................................................................................................................................................................................................................................................................................................................................................	25	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTGACAT---------------------GTGTGC---------TGCGTG.......	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCTGGTTTTGACAT---------------------GTGTGC---------TT...........	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................ATAGT------------------------------------GCT--------------------------------------------------------------------TTACCCGTATCTAA---------------------G........................................................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................ATAATGCTCATAGT------------------------------------GCT--------------------------------------------------------------------TTACC.......................................................................................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................ATCTAA---------------------GAAGC-ACAGGGAAAATAC......................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GTATCTAA---------------------GAAGC-ACAGGGAAAAT........................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GTATCTAA---------------------GAAGC-ACAGGGAAAATAC......................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATCCAGCTGGTTTTGA....................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GTATCTAA---------------------GAAGC-ACAGGGA............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGC-ACAGGGAAAATAGTTAATGCCGAG...........................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGTTAATGCCGAGTT.........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AACCTTTTCATAATGCTCATAGT------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGC-ACAGGGAAAATAGTTAA..................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................A---------------------GAAGC-ACAGGGAAAATAGTTAATGC...............................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CGTATCTAA---------------------GAAGC-ACAGGGAAAAT........................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTTAATGCCGAGTTTG.......................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CTAA---------------------GAAGC-ACAGGGAAAATAGTTAATC................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

ATCGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCCTTGTTTAG--TTCAGTTGGAATATTCTGGTTAACAAAG-A-AGTAGTTCATACA--------------------AGAA----------CA------------------C---------------------------------------ATCTTTC-------AAA--------TGATAGTTCCTCTG----------------------ACAAC------------------------TATATGATATAGTGATTCGATCCGGCCTGTTCAGCAAA---------------------AGGGCG---------GGTG--C------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_19563

3r:14020546-14020706 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-15.5	-15.3	-15.3