ID:

dsi_19534

 Coordinate:

2r:4784027-4784176 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_4783926_4784026_+]; CDS [2r_4783926_4784026_+]; intron [2r_4784027_4784368_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGGTGTGGTGAGCGGTCAAACAGGTGCTAACCAGGCGGCTGTATCGAACAGTAAGTAATCGAGGATTTAATATCACAGAATGGGGTCCAAAAGAGTATGCATTGCAGTCAGGTACAGAAGTCTTAAAAACAAACTTAAAATGTTAACCATTTTAATGCATATTCTTGCCACATCAGAGAGTTTTCTTCACAAATATAACGCACTATTACTCAAATCAACTTCAATTCAGCCACGACTTTGGCTCTGCAAT
**************************************************..........(((((.......((...((.((.(((....((((((((((((((.(((..((((((........................)))..)))))).))))))))))))))))).)))).))......)))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
......................GGTGCTAACCAGGCGGCTGTATCGAA.......................................................................................................................................................................................................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0
................................................................................................................................................................................................ATATAACGCACTATTACTCA...................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
............................AACCAGGCGGCTGTATCGAA.......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............GGTCAAACAGGTGCTAACCAGGCGGCT.................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................CAGGTGCTAACCAGGCGGCT.................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................TGCTAACCAGGCGGCTGTATCGAACAA....................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0
......................GGTGCTAACCAGGCGGCTGTATCGA........................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................ATTGCCGTCAGGTAAAGATGTC................................................................................................................................ 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0
...........................................................................................AGAGTATGCTTTGCCGTCCG........................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 0 1 0 0
..........................................................................................................GTCAGGTAAAGATGTCTGA............................................................................................................................. 19 3 10 0.40 4 0 0 0 4 0 0 0 0 0
..........................................................................................................GTCAGGTAAAGAAGTC................................................................................................................................ 16 1 3 0.33 1 0 0 0 1 0 0 0 0 0
................................................................................................................TTCAGAAGTCTTAAAAA......................................................................................................................... 17 1 7 0.29 2 0 0 0 0 0 0 0 2 0
.................................................................................................................ACAGGAGTCTAAAAAAGAAA..................................................................................................................... 20 3 17 0.18 3 0 0 0 0 0 0 0 0 3
..................................................................................GGGGCCAAAAGAGTA......................................................................................................................................................... 15 1 14 0.14 2 0 0 0 2 0 0 0 0 0
..........................................................................................................GTCAGGTAAAGATGTCTAA............................................................................................................................. 19 3 18 0.11 2 0 0 0 2 0 0 0 0 0
...............................................................................................................GTTCAGAAGTCTTAA............................................................................................................................ 15 1 9 0.11 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................CAACTTCAATTCAGACTCGT............... 20 3 13 0.08 1 0 0 0 0 0 0 1 0 0
..GTGTGGTGAGCGGGC......................................................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 1 0 0 0 0 0
...........................................................................................AGAGTATTCATTGCA................................................................................................................................................ 15 1 16 0.06 1 0 0 0 0 0 0 1 0 0
................................................................................................................TACAGTAGTCTTAAA........................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0
..............................................AACAGTACGTCATAGAGG.......................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GCCACACCACTCGCCAGTTTGTCCACGATTGGTCCGCCGACATAGCTTGTCATTCATTAGCTCCTAAATTATAGTGTCTTACCCCAGGTTTTCTCATACGTAACGTCAGTCCATGTCTTCAGAATTTTTGTTTGAATTTTACAATTGGTAAAATTACGTATAAGAACGGTGTAGTCTCTCAAAAGAAGTGTTTATATTGCGTGATAATGAGTTTAGTTGAAGTTAAGTCGGTGCTGAAACCGAGACGTTA
**************************************************..........(((((.......((...((.((.(((....((((((((((((((.(((..((((((........................)))..)))))).))))))))))))))))).)))).))......)))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.....................................................................................................................................................................................................................TGGTTGAAGTTAAGTCTGAGC................ 21 3 4 0.50 2 2 0 0 0 0
............CCCAGTTTGTCCAAGATT............................................................................................................................................................................................................................ 18 2 3 0.33 1 0 1 0 0 0
.............CCAGTTTGTCCAAGATTATT......................................................................................................................................................................................................................... 20 3 8 0.25 2 0 2 0 0 0
...............AGTTTGTCCACGACTGGTA........................................................................................................................................................................................................................ 19 2 5 0.20 1 0 0 1 0 0
..........................................................................................................................................................................................AGTGGTTATATTGCG................................................. 15 1 6 0.17 1 1 0 0 0 0
......................................GACATGGCTAGTCATTCAG................................................................................................................................................................................................. 19 3 8 0.13 1 1 0 0 0 0
.....................................................................................................................................GGATTTTACAATTGGTTAA.................................................................................................. 19 2 12 0.08 1 0 0 1 0 0
..............................................................................................................................................................................TCTCTCAAGAGCAGTGT........................................................... 17 2 12 0.08 1 0 0 0 1 0
.....................................................................................................................................................................................................................TGGTTGAAGTTAAGTCTG................... 18 2 13 0.08 1 1 0 0 0 0
................................................................................................................................................................................................................................AAGTCGGAGCTGAATCC......... 17 2 14 0.07 1 0 0 0 0 1
.....................................................................................................AGCGTCAGTCCGTGTC..................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0

Generated: 04/23/2015 at 03:54 AM