ID:

dsi_19484

Coordinate:

3l:15722033-15722294 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_15721532_15722032_-]; CDS [3l_15721532_15722032_-]; CDS [3l_15722295_15723681_-]; exon [3l_15722295_15723691_-]; intron [3l_15722033_15722294_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATACAACGAAGAGTATGACTACAACAACTGGATGTCGCGCAGTTTCGGAGGTGAGTTATTATATACGTTATAATCCTTGGGGTGGAACAGTGCACTAGGTTATGTTGCCACAATTTAAAAGATATAAGATAAATAACATTTGTCTATACAAATAGCTTGGAATTTGTTCAGTTTATTGGCTGTAACGTAAAAAATTCAATAATCAATATAAACTGCAACCTATTTTAAGTATTCAAGTGGAATAGCATAAAATTGGAACACGGCTAATTATTGTGAGCACAAATGTATGTATATTTCAAATTACCATTGCAGGTGCCCAGCGCTTTGGGCGCATGGGCAATGGACCGCCGCCGCACTTTGGC ************************************************.((((.(((.(((((((((....(((.......)))...(((..((((.((((((((((((...............((((((((...)))))))).........(((((((((..((((((((((((((.(((...............))).)))..)))))))).)))..)))))))))......))))..))))))))..))))..))).(((.((....)).)))...)))))))))))).))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	O001 Testis
..ACAACGAAGAGTATGACT......................................................................................................................................................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AATGGACCGCCGCCGCAC......	18	0	1	1.00	1	1	0	0	0	0
.........................AACTGGATGTCGCGC..................................................................................................................................................................................................................................................................................................................................	15	0	1	1.00	1	0	0	0	1	0
....AACGAAGAGTATGACTACAACAACT.............................................................................................................................................................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................ATGGGCAATGGACCGCCGCC..........	20	0	1	1.00	1	1	0	0	0	0
...................TACAATAACTGGATGTCGCGCAGT...............................................................................................................................................................................................................................................................................................................................	24	1	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................GCGCATGGGCAATGGACCGCC.............	21	0	1	1.00	1	0	0	0	0	1
...............CGACTGCAAAAACTGGATGTC......................................................................................................................................................................................................................................................................................................................................	21	3	4	0.25	1	0	0	1	0	0
.........................................GTCTCGGAGGTGAGT..................................................................................................................................................................................................................................................................................................................	15	1	5	0.20	1	1	0	0	0	0
.........................AATTGGATGTCGCGCA.................................................................................................................................................................................................................................................................................................................................	16	1	6	0.17	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................AATGTATTTATGTTTCAAATT............................................................	21	2	6	0.17	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................ATGGACCCCCGTCGC........	15	2	20	0.05	1	0	0	0	1	0

Anti-sense strand reads

TATGTTGCTTCTCATACTGATGTTGTTGACCTACAGCGCGTCAAAGCCTCCACTCAATAATATATGCAATATTAGGAACCCCACCTTGTCACGTGATCCAATACAACGGTGTTAAATTTTCTATATTCTATTTATTGTAAACAGATATGTTTATCGAACCTTAAACAAGTCAAATAACCGACATTGCATTTTTTAAGTTATTAGTTATATTTGACGTTGGATAAAATTCATAAGTTCACCTTATCGTATTTTAACCTTGTGCCGATTAATAACACTCGTGTTTACATACATATAAAGTTTAATGGTAACGTCCACGGGTCGCGAAACCCGCGTACCCGTTACCTGGCGGCGGCGTGAAACCG ************************************************.((((.(((.(((((((((....(((.......)))...(((..((((.((((((((((((...............((((((((...)))))))).........(((((((((..((((((((((((((.(((...............))).)))..)))))))).)))..)))))))))......))))..))))))))..))))..))).(((.((....)).)))...)))))))))))).))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553487 NRT_0-2 hours eggs	M023 head	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
.............................................................ATCTGCAATCTGAGGAACC..........................................................................................................................................................................................................................................................................................	19	3	14	1.93	27	12	0	11	4	0	0	0	0	0
............................................AGCCTCCACTCAACAATGT...........................................................................................................................................................................................................................................................................................................	19	2	2	1.00	2	0	1	1	0	0	0	0	0	0
..............................................................TCTGCAATCTTAGGAACC..........................................................................................................................................................................................................................................................................................	18	2	1	1.00	1	1	0	0	0	0	0	0	0	0
............................................................TATCTGCAATCTGAGGAACC..........................................................................................................................................................................................................................................................................................	20	3	4	1.00	4	1	0	1	2	0	0	0	0	0
...............ACAGATGTTGTTGGCC...........................................................................................................................................................................................................................................................................................................................................	16	2	20	0.80	16	0	12	0	0	4	0	0	0	0
............................................................TATCTGCAATCTTAGGAAC...........................................................................................................................................................................................................................................................................................	19	2	2	0.50	1	0	1	0	0	0	0	0	0	0
..........................................................................................ACCTGATCCAATACAA................................................................................................................................................................................................................................................................	16	1	4	0.25	1	0	0	0	0	0	1	0	0	0
............................................................TATCTGCAATCTGAGGAAC...........................................................................................................................................................................................................................................................................................	19	3	10	0.20	2	0	0	0	1	1	0	0	0	0
..........................................TAAGCCTCCACTCAACAATG............................................................................................................................................................................................................................................................................................................	20	3	7	0.14	1	1	0	0	0	0	0	0	0	0
.............................................................ATCTGCAATCTCAGGAACC..........................................................................................................................................................................................................................................................................................	19	3	10	0.10	1	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TTAAATATATAGTTTAATGGTA.......................................................	22	3	10	0.10	1	0	0	0	0	0	0	1	0	0
..............................................CGTCCACTCAACAATGTAT.........................................................................................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1
..................................AGCGCTTGAATGCCTCCA......................................................................................................................................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	1	0
.....TCCTTCTCATACTGTTG....................................................................................................................................................................................................................................................................................................................................................	17	2	20	0.05	1	0	1	0	0	0	0	0	0	0

Generated: 04/23/2015 at 06:49 PM