dsi_19478

exon [3r_27141419_27141969_+]; CDS [3r_27141419_27141759_+]; exon [3r_27140621_27141352_+]; CDS [3r_27140621_27141352_+]; intron [3r_27141353_27141418_+]

##################################################------------------------------------------------------------------################################################## CGAACGCTGCACCTCGGGAAGGTCCATTCTTGTGACGAACTTATCTTCAGGTGGGTTACCCGTTTCCTAAAATTGTTTAAAATTATACATTTTTATCAATCAAAATTTCGTTGTAGATGCTACTGAAGCTGACCTACGGAAAGTTTTTAACGAGAGCGGCGAAATC ************************************************.....((..............((((...(((((.....)))))...))))..............))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M023 head	M053 female body	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR902008 ovaries	SRR902009 testis	GSM343915 embryo
...........................................................................................................................TGAAGCTGACCTACGGAAAGTTTT...................	24	0	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACTGAAGCTGACCTACGGAAAG.......................	22	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TACGGAAAGTTTTTAACGAGAGCGGC......	26	0	1	2.00	2	0	0	0	0	1	0	0	0	0	1	0	0
..........................TTCTTGTGACGAACTTATCTTCAGATGC................................................................................................................	28	2	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................ACTGAAGCTGACCTACGGAAA........................	21	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TACGGAAAGTTTTTAACGAGAGCGGCG.....	27	0	1	2.00	2	0	0	1	0	1	0	0	0	0	0	0	0
.....................................................................................................................TGCTACTGAAGCTGACCTACGGAAAGT......................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..............CGGGAAGGTCCATTCTTGTGACGA................................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TACTGAAGCTGACCTACGGAAAGTTT....................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................AATCAAAATTTCGTTGTAGAT................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................TTTTTAACGAGAGCGGCGAA...	20	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
...........................TCTTGTGACGAACTTATC.........................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.......................CCATTCTTGTGACGA................................................................................................................................	15	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..............CGGGAAGGTCCATTCTTGTGACGAACT.............................................................................................................................	27	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................ACGGAAAGTTTTTAACGAGAGCGGC......	25	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
..AACGCTGCACCTCGGGAAGGC...............................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................GATGCTACTGAAGCT....................................	15	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..AACGCTGCACCTCGGGAAG.................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACTGAAGCTGGCCTACGGAAAG.......................	22	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
............................CTTGTGACGAACTTATCTTCAGATG.................................................................................................................	25	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..AACGCTGCACCTCGGG....................................................................................................................................................	16	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
........................CATTCTTGTGACGAACTTATCTTCAGA...................................................................................................................	27	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TACGGAAAGTTTTTAA................	16	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
CGAACGCTGCACCTCGGGAAG.................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CTACTGAAGCTGACCTACGGAAAGC......................	25	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TACTGAAGCTGACCTACGGAAAGTTTT...................	27	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................ATCAATCAAAATTTCGTTGTAGATGC..............................................	26	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0
.............................TTGTGACGAAGTTATC.........................................................................................................................	16	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.GAACGCTGCACCTCGGGAAGG................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................GCTACTGAAGCTGACCT...............................	17	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...............GGGAAGGTCCATTCTTGTGACGAACT.............................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
............................CTTGTGACGAACTTATCTTCA.....................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................TGAAGCTGACCTACGGAAAGTCTC...................	24	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................AGATGCTACTGAAGCTGACCTACGGAAA........................	28	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................ACGGAAAGTTTTTAA................	15	0	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0
..CACTCTGCACCTCGGG....................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0

GCTTGCGACGTGGAGCCCTTCCAGGTAAGAACACTGCTTGAATAGAAGTCCACCCAATGGGCAAAGGATTTTAACAAATTTTAATATGTAAAAATAGTTAGTTTTAAAGCAACATCTACGATGACTTCGACTGGATGCCTTTCAAAAATTGCTCTCGCCGCTTTAG ************************************************.....((..............((((...(((((.....)))))...))))..............))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
................................................................................................................................................AAAATTGCTCACGCCGTTT...	19	2	2	0.50	1	1	0	0
...........................................AGAAGTCCACTCAATG...........................................................................................................	16	1	2	0.50	1	1	0	0
..........................................................GGGCATATGATTTAAACAAATTTT....................................................................................	24	3	4	0.25	1	0	1	0
...................................................................................................................................................ATAGCTCTCGCAGCTCTAG	19	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:27141303-27141468 +	dsi_19478	CGAACG---------CTGCACCTCGGGAAGGTCCATTCTTGTGACGAACTTATCTTCAGGTGGGTTACCCG---TT-------TCC----------------------------------------------------------------------------------------TAAAAT--------TGT-------TTA----------------------------------------------AA--ATT-A------TACATTTTTATCAA-----------TCAAA------ATTTCG--------------------TTGTAGATGCTAC--TGAAGCTGACCTACGGAAAGTTTTTAACG-AGAGCGGCGAAATC
droSec2	scaffold_31:530854-531019 +		CGAACG---------CAGCACCTCGGGAAGGTCCATTCTTGTGACGAACTTAACTTCAGGTGGGTTACCCG---TT-------TCC----------------------------------------------------------------------------------------TAAAAT--------TGT-------TTA----------------------------------------------AA--ATT-A------TACATTTTTATCAA-----------TCAAA------ATTTCG--------------------TTGTAGATGCTAC--TGAAGCTGACCTACGGAAAGTATTTAACG-AGAGCGGCGAAATC
dm3	chr3R:27880030-27880195 +		CGAACG---------CAGCACCTCGGGGAGGGCCATTCTTGTGACGAACTTGACTTCAGGTGGGTTACCCG---TT-------TCG----------------------------------------------------------------------------------------TAAAAT--------TGT-------TTA----------------------------------------------AA--ATT-A------TTAATCATTATCAT-----------GTAAA------ATTTCG--------------------TTGTAGATGCTAC--TGAAGCCGACCTGCGGAAAGTGTTTAACG-ATAGCGGCGAAATC
droEre2	scaffold_4820:64213-64412 -		CGTACG---------CAGCAGCTCGGGGAGGGCCATTCTTGTGACGAACTTGACTTCAGGTGGGTTACCCA---TT-------TTC----------------------------------------------------------------------------------------TAGTAT--------TGATAACATTT-TAAAATATTGATTAACTTGTACAA--------TAATAAAAACAAATG------------CAAAAATTTT------------T----A--------TTAATTTCG--------------------TTGTAGGTGCCAC--TGAAGCCGACCTGCGGAAAGTGTTCAACG-AGAGCGGCGAAATC
droYak3	3R:28807876-28808050 +		CGCTGA---------------CCGGGGGAGGTCCATTCTTGTCACGAACTTGACTTCAGGTGGGTTGCCCT---TT-------TT------------------------T------------------------------------------------------------------------------------------TATAATAATAAATTATTCGTAGAA--------TTATTAAAACTCATG------------CAAA-------------A-TTAT----T--------TTAATTTCG--------------------TTGCAGTTGTCTC--TGAAGCCGACCTGCGAAAAGTGTTTAACG-ATAGCGGCGAAATT
droEug1	scf7180000409488:25654-25817 -		TCATGT---------CAGTAGTTCGGGGAGGGCTATTCTAGTGACAAACTTGACATCAGGTGGGTTGCATA---TT-------CT------------------------A----------------------------------------------------------------G-------ATAAACA--------------T-----------TTTGTTCTA--------TTATAC-----------------------AA-------------A-TAAT----T--------TTATTTTGC--------------------TTGTAGATACTAC--TGAAGCTGACCTCAGGCAACTGTTTACCA-AGAGCGGCGAAATC
droBia1	scf7180000301591:26109-26286 -		TGAGCG---------CAGCACCTCGGGAAAGACCATTCTTGTGACTAACTTGACCACAGGTGGGTGCCCTA---AT------------CTG------------------T-A-----------------------------------------------------------------TTTTGTGTACCA----------------------------------------TTA---------------A------AAATATTATACATTTTTTTCATA-CTGT----A--------CAATTTTTC--------------------TTGTAGATACCAC--CGAAGCCGACCTGCGGAATGTGTTTAACG-AGAGCGGAGATATC
droTak1	scf7180000415712:1014094-1014302 +		TGAACG---------CAGCACGTCCGGAAAGGCGATTCTTGTAACGAACTTGTCTCCTGGTAAGTTGCCCTA--GT------------CTG------------------TACTTTTATTTTCATTGATGAAAGCTGAAATTTCTCATAATGACGTTATCAACATATTCTCGGA-----------------T-------TTA------------------------------------------------------------AA-------------A-CCAT----T--------CACTTTTCC--------------------TTGCAGATACCAC--TGAAGCCGACCTGCGGGAAGTCTTTAACA-AGAGCGGCGAAATC
droEle1	scf7180000490056:24211-24385 +		CCAACT---------CAGTAACACGGCGAGGTCAATTTTGGTGACGAACTTGACTTCAGGTGGGTTACTTA---CT-------TT-----T------------------GGCTT-----------------------------------------------------------------TTATTC---A--------------AA-----------A--GAAAG-----------------------------C-A------TGCAAATTTACCGAATATGA----T--------TTATTTTAC--------------------TTGTAGATACTAC--CGAAGAAGACTTGAGGGGTGTGTTTAACG-AGAGCGGCGAAATC
droRho1	scf7180000777196:59492-59653 +		CGAACG---------TAATTCCGCGGCGAGGACCATTTTGGTGACGAACCTTTCCTCAGGTGGGTTGCTACA-C--------------CAA---------------CAA----------------------------------------------------------------------T--------TTT-------CAC----------------------------------------------ATAC---AAATACGAT-ATA------------TTT----T--------TTATTTTGC--------------------CTGTAGATACTAC--TGAAGCCGACCTGCGAGATTTGTTCAAAG-AAAGCGGCAAAATC
droFic1	scf7180000454097:314566-314726 +		CGAGCG---------AAGCTCCGGGGCAAGGAGCATTTTAGTGACAAATTTAACCTCAGGTCGGTTGCTTT---TT-------AT--------------------------C--------------------------------------------------------------GT---TTATTC---A--------------CT-----------A--AAGAGTTATT-----------------------------------ACA------------ACC----A--------TTATTCTTA--------------------TTGTAGATACCAC--TGAAGACGATCTGCGTGAAGTGTTTAACG-AGAGTGGGGAAATT
droKik1	scf7180000302475:1922709-1922873 -		CCAGCG---------CAATAGCTCGGGACGTGCCATTCTGGTGTCGAATCTGACCAACAGTGAGTTGAATAA---------------------------------------------------------------------------------------------------------------------------------------------------AACAGAGATC-----------------------------------AAA------------GTC----A--------AGAATCTAATTATTTCACTTTAATCATTTCTTTAGATACCAC--CGAAGAGCAGCTGCGGGAAGTGTTTGGCC-AAAACGGTGACATC
droAna3	scaffold_13340:33242-33400 +		CGACCG---------------TTCTAATAAGACCATTTTGATCACAAATTTAGCCAAAGGTGAGTGTTGGCA-A--------------TTA------------------T-C--------------------------------------------------------------A---TTTTTCTACCA----------------------------------------T----------------------------A--------------------TGGTTTA-T-TAAATGTCATCT-----------------TCATTCATGCAGATGCCAC--TGAAAGTGATCTTCGAGAAGTGTTTGAAA-AGAGCGGCGAGATC
droBip1	scf7180000394085:896373-896531 -		CGAGGT---------------TTCTAATAAGAGCATTTTGATTACAAATTTAGCCTCAGGTAAGTTTTTTG---CC-------ATT----------------------------------------------------------------------------------------TTGGAC--------TTT-------TCA----------------------------------------------AG--------TA--------------------TGGTTTA-T-CAAATTTTATTC-----------------CCATCCATGTAGATGCCAC--TGAAAGTGATATTCGAGAGGTGTTCCAAA-AGAGCGGCGAGATC
dp5	2:15272902-15273072 +		CACCTT---------CAACACATCGCCGCGAACCGTTCTGGTGACAAATCTTGCCGCAGGTGGGTTTTTCCCC-CTCCCCATTCCCAG------------------CAC----------------------------------------------------------------------C--------TTT-------TCC----------------------------------------------ATA--CT-A------ATATTTTTGTTCT-----------TTTAC----------TAT--------------------TTGTAGATGTGAC--TGAGAGCGACCTACAGGAATTGCTTGGTG-AGAGCGGTAAGATC
droPer2	scaffold_0:5143775-5143945 -		CACCTT---------CAACACATCGCCACGAACCGTTCTGGTGACAAATCTTGCCGCAGGTGGGTTTTTCCCC-CTCCCCATTCCCAG------------------CAC----------------------------------------------------------------------C--------TTT-------TCC----------------------------------------------ATA--CT-A------ATATTTTTGTTCT-----------TTTAC----------TAT--------------------TTGTAGATGTGAC--TGAGAGCGACCTACAGGAATTGCTTGGTG-AGAGCGGTAAGATC
droWil2	scf2_1100000004902:10495414-10495646 +		CGAATTATGTTCA--TCAGACCTCGGCACGTACCATTTTGGTTAAAAATTTGGCCTATGGTAAGCTTAAACCG-TT-------TCA------TTATCTGGCCCGCTTA----ACTTATTTAAATTCCTAAA---TTCAATTTTAGATAATAGATATTTTAACATATTTACCATTTTATAC-------------------------------------------------------------------------T-T------ATATTTT------------A----T--------TTACTTGTT--------------------TCTTAGGAGTTTC--TGAAGACGATTTGAAGACCTTGTTCGGCA-AATCCGGTGAAATC
droVir3	scaffold_13047:15129091-15129264 +		GGAAAAGTATCGTTACAGCTCATGCGGGCGCACCATTCGGGTAACAAACTTAGCTCCAGGTGCGTTTATTATA-CAA----------------------------------ATT-----------------------------------------------------------------TTGATC---A--------------GT-----------G--TGACA-----T-----------------TTAC---TAATTTC-----T-----------------------------TAAAT-----------------TCTTTTGTTTAGGCGTCGA--AGAGGAGGATCTTAATGAGCTGTTCAAAA-AAGCGGGCGAAATT
droMoj3	scaffold_6540:18600994-18601157 +		CCAATA---------CAGCTCCTCGCCCCGCTCAATTGTTGTGACAAATGTGGCTCCAGGTACGTGCGAGCA-C--------------CTTTT----------------T----------------------------------------------------------------G-------CTTATCA--------------C-------------------------------------------TTAC---CAATTCTAA--AT------------TAA----T--------TTATTGT----------------------CTTTAGGTGTCGAAGTAAGCAGCACCTAAATGAAATCTTTTCAGTAAGCTGGAGAAATC
droGri2	scaffold_14830:4859059-4859230 -		CCACTA---------CAGTTCCTCCGTGCGCACCATTCTCGTAACAAACTTGCATCCCAGTGAGTGTACAAGA-GA-------------TTTATGTCTGAATTGAATAT----------------------------------------------------------------------C--------ATT-------ATG----------------------------------------------ATA--TT-A------ATCGTTA------------A----T--------TT-ATCTAT--------------------TTGCAGGTGTCGA--TGAGCAGCAGATAAATGATCTGTTCAGTG-AAGTCGGTGAGGTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CGAACG---------CTGCACCTCGGGAAGGTCCATTCTTGTGACGAACTTATCTTCAGGTGGGTTACCCG---TT-------TCC----------------------------------------------------------------------------------------TAAAAT--------TGT-------TTA----------------------------------------------AA--ATT-A------TACATTTTTATCAA-----------TCAAA------ATTTCG--------------------TTGTAGATGCTAC--TGAAGCTGACCTACGGAAAGTTTTTAACG-AGAGCGGCGAAATC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................................................................................................................................................TGAAGCTGACCTACGGAAAGTTTT....................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................AC--TGAAGCTGACCTACGGAAAG........................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TACGGAAAGTTTTTAACG-AGAGCGGC......	26	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................AC--TGAAGCTGACCTACGGAAA.........................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TACGGAAAGTTTTTAACG-AGAGCGGCG.....	27	1	2.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TGCTAC--TGAAGCTGACCTACGGAAAGT.......................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................CGGGAAGGTCCATTCTTGTGACGA................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TAC--TGAAGCTGACCTACGGAAAGTTT.....................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................AA-----------TCAAA------ATTTCG--------------------TTGTAGAT...................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TTTTTAACG-AGAGCGGCGAA...	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TCTTGTGACGAACTTATC.........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CCATTCTTGTGACGA................................................................................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................CGGGAAGGTCCATTCTTGTGACGAACT.............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................ACGGAAAGTTTTTAACG-AGAGCGGC......	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AACG---------CTGCACCTCGGGAAGGC...............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GATGCTAC--TGAAGCT.....................................	15	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..AACG---------CTGCACCTCGGGAAG.................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..AACG---------CTGCACCTCGGG....................................................................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................CATTCTTGTGACGAACTTATCTTCAGA...................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TACGGAAAGTTTTTAA.................	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
CGAACG---------CTGCACCTCGGGAAG.................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................CTAC--TGAAGCTGACCTACGGAAAGC.......................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TAC--TGAAGCTGACCTACGGAAAGTTTT....................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATCAA-----------TCAAA------ATTTCG--------------------TTGTAGATGC.................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.GAACG---------CTGCACCTCGGGAAGG................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GCTAC--TGAAGCTGACCT................................	17	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................GGGAAGGTCCATTCTTGTGACGAACT.............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................CTTGTGACGAACTTATCTTCA.....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AGATGCTAC--TGAAGCTGACCTACGGAAA.........................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................ACGGAAAGTTTTTAA.................	15	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

CGAACG---------CAGCACCTCGGGAAGGTCCATTCTTGTGACGAACTTAACTTCAGGTGGGTTACCCG---TT-------TCC----------------------------------------------------------------------------------------TAAAAT--------TGT-------TTA----------------------------------------------AA--ATT-A------TACATTTTTATCAA-----------TCAAA------ATTTCG--------------------TTGTAGATGCTAC--TGAAGCTGACCTACGGAAAGTATTTAACG-AGAGCGGCGAAATC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
CGAACG---------CAGCACCTCGGG....................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..................................ATTCTTGTGACGAACTTAACTT.......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................ACGGAAAGTATTTAACG-AGAGC.........	22	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................GAAGCTGACCTACGGAAAGTATTT...................	24	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................AC--TGAAGCTGACCTACGGAAA.........................	21	1	1.00	1	0	0	1	0
........................................................CAGGTGGGTTACCCG---TT-------TCC----------------------------------------------------------------------------------------T................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................CTACGGAAAGTATTTAACG-AGAGC.........	24	1	1.00	1	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GTATTTAACG-AGAGCGGC......	18	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................CTACGGAAAGTATTTAACG-AGA...........	22	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................ATTTCG--------------------TTGTAGATGCTAC--TG..........................................	21	1	1.00	1	0	1	0	0
.......................................TGTGACGAACTTAACTTCAG....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.................GCACCTCGGGAAGGTCCATTCTTGTGAC..................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................CTAC--TGAAGCTGACCTACG.............................	19	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................GAAGCTGACCTACGGAAA.........................	18	1	1.00	1	0	0	1	0

dm3

CGAACG---------CAGCACCTCGGGGAGGGCCATTCTTGTGACGAACTTGACTTCAGGTGGGTTACCCG---TT-------TCG----------------------------------------------------------------------------------------TAAAAT--------TGT-------TTA----------------------------------------------AA--ATT-A------TTAATCATTATCAT-----------GTAAA------ATTTCG--------------------TTGTAGATGCTAC--TGAAGCCGACCTGCGGAAAGTGTTTAACG-ATAGCGGCGAAATC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................TGCGGAAAGTGTTTAACG-ATAGCGGC......	26	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	3	3	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TGCTAC--TGAAGCCGACCTGCGGAAAG........................	26	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	1	2	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GAAAGTGTTTAACG-ATAGCGGCG.....	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GATGCTAC--TGAAGCCGACCTGCGGAAAG........................	28	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TGAAGCCGACCTGCGGAAAGTG......................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAGTGTTTAACG-ATAGCGGCG.....	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................TAC--TGAAGCCGACCTGCGGAAAGTGTT....................	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................CCTCGGGGAGGGCCATTCTTG......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TGTTTAACG-ATAGCGGCGAAAT.	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TGAAGCCGACCTGCGGAAAGTGTTTA..................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CGTACG---------CAGCAGCTCGGGGAGGGCCATTCTTGTGACGAACTTGACTTCAGGTGGGTTACCCA---TT-------TTC----------------------------------------------------------------------------------------TAGTAT--------TGATAACATTT-TAAAATATTGATTAACTTGTACAA--------TAATAAAAACAAATG------------CAAAAATTTT------------T----A--------TTAATTTCG--------------------TTGTAGGTGCCAC--TGAAGCCGACCTGCGGAAAGTGTTCAACG-AGAGCGGCGAAATC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................CAACG-AGAGCGGCGAAATC	19	1	1.00	1	0	1	0	0	0	0	0
..................................ATTCTTGTGACGAACTTGACT........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...................AGCTCGGGGAGGGCCATTCTTGTGAC..................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAGTGTTCAACG-AGAGCGGCG.....	21	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................GACCTGCGGAAAGTGTTCAACG-AG............	24	1	1.00	1	0	0	0	0	1	0	0
.................GCAGCTCGGGGAGGGCCATTCTTGT.....................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................GACCTGCGGAAAGTGTTCAACG-AGAGC.........	27	1	1.00	1	0	1	0	0	0	0	0
....................................TCTTGTGACGAACTTGACTTCAGGTGCC...............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AGTGTTCAACG-AGAGCGGC......	19	1	1.00	1	0	0	1	0	0	0	0
..TACG---------CAGCAGCTCGGGGAGG................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
CGTACG---------CAGCAGCTCGGGGAG.................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
..................CAGCTCGGGGAGGGCCATTCTTGTGA...................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
................AGCAGCTCGGGGAGGGCC.............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
...................................TTCTTGTGACGAACTTGACT........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GTTCAACG-AGAGCGGCGAAAT.	21	1	1.00	1	0	0	0	0	1	0	0
.....G---------CAGCAGCTCGGGGAGGGCCA............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAGTGTTCAACG-AGAGCGGC......	20	1	1.00	1	0	0	0	0	1	0	0

droYak3

CGCTGA---------------CCGGGGGAGGTCCATTCTTGTCACGAACTTGACTTCAGGTGGGTTGCCCT---TT-------TT------------------------T------------------------------------------------------------------------------------------TATAATAATAAATTATTCGTAGAA--------TTATTAAAACTCATG------------CAAA-------------A-TTAT----T--------TTAATTTCG--------------------TTGCAGTTGTCTC--TGAAGCCGACCTGCGAAAAGTGTTTAACG-ATAGCGGCGAAATT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................CGACCTGCGAAAAGTGTTTAACG-ATAGC.........	28	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAGTGTTTAACG-ATAGCGGC......	20	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TGCAGTTGTCTC--TGAAGCCGG...................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................AAAGTGTTTAACG-ATAGCGGCGAA...	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................CCATTCTTGTCACGAACTTGACTTCA.....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................GTCCATTCTTGTCACGAACTT............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GTCTC--TGAAGCCGACCTGCGAAAAG........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GTTGTCTC--TGAAGCCGACCTGC..............................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................GTCCATTCTTGTCACGAACTTGACT........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GTTTAACG-ATAGCGGCGAAATT	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................GTCCATTCTTGTCACGAACTTGACTTCA.....................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AGTGTTTAACG-ATAGCGGC......	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GAAAAGTGTTTAACG-ATAGC.........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TCTC--TGAAGCCGACCTGCGAAAAGT.......................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................ATTCTTGTCACGAACTTGACT........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................CTTGTCACGAACTTGACTT.......................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GTTTAACG-ATAGCGGCGAAA..	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CAGTTGTCTC--TGAAGCCGACC.................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................ATTTCG--------------------TTGCAGTTGTCTC--T...........................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CTC--TGAAGCCGACCTGCGA............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...TGA---------------CCGGGGGAGGTCCATTCTTGTCAC..................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................GTCCATTCTTGTCACGAACT.............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CGACCTGCGAAAAGTGTTC...................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................TCCATTCTTGTCACGAACTTGACTTCAG....................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..CTGA---------------CCGGGGGAGGTCCATTCTTGT.....................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GTTGTCTC--TGAAGCCGACCTGCGA............................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TCATGT---------CAGTAGTTCGGGGAGGGCTATTCTAGTGACAAACTTGACATCAGGTGGGTTGCATA---TT-------CT------------------------A----------------------------------------------------------------G-------ATAAACA--------------T-----------TTTGTTCTA--------TTATAC-----------------------AA-------------A-TAAT----T--------TTATTTTGC--------------------TTGTAGATACTAC--TGAAGCTGACCTCAGGCAACTGTTTACCA-AGAGCGGCGAAATC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGAGCG---------CAGCACCTCGGGAAAGACCATTCTTGTGACTAACTTGACCACAGGTGGGTGCCCTA---AT------------CTG------------------T-A-----------------------------------------------------------------TTTTGTGTACCA----------------------------------------TTA---------------A------AAATATTATACATTTTTTTCATA-CTGT----A--------CAATTTTTC--------------------TTGTAGATACCAC--CGAAGCCGACCTGCGGAATGTGTTTAACG-AGAGCGGAGATATC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGAACG---------CAGCACGTCCGGAAAGGCGATTCTTGTAACGAACTTGTCTCCTGGTAAGTTGCCCTA--GT------------CTG------------------TACTTTTATTTTCATTGATGAAAGCTGAAATTTCTCATAATGACGTTATCAACATATTCTCGGA-----------------T-------TTA------------------------------------------------------------AA-------------A-CCAT----T--------CACTTTTCC--------------------TTGCAGATACCAC--TGAAGCCGACCTGCGGGAAGTCTTTAACA-AGAGCGGCGAAATC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCAACT---------CAGTAACACGGCGAGGTCAATTTTGGTGACGAACTTGACTTCAGGTGGGTTACTTA---CT-------TT-----T------------------GGCTT-----------------------------------------------------------------TTATTC---A--------------AA-----------A--GAAAG-----------------------------C-A------TGCAAATTTACCGAATATGA----T--------TTATTTTAC--------------------TTGTAGATACTAC--CGAAGAAGACTTGAGGGGTGTGTTTAACG-AGAGCGGCGAAATC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGAACG---------TAATTCCGCGGCGAGGACCATTTTGGTGACGAACCTTTCCTCAGGTGGGTTGCTACA-C--------------CAA---------------CAA----------------------------------------------------------------------T--------TTT-------CAC----------------------------------------------ATAC---AAATACGAT-ATA------------TTT----T--------TTATTTTGC--------------------CTGTAGATACTAC--TGAAGCCGACCTGCGAGATTTGTTCAAAG-AAAGCGGCAAAATC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGAGCG---------AAGCTCCGGGGCAAGGAGCATTTTAGTGACAAATTTAACCTCAGGTCGGTTGCTTT---TT-------AT--------------------------C--------------------------------------------------------------GT---TTATTC---A--------------CT-----------A--AAGAGTTATT-----------------------------------ACA------------ACC----A--------TTATTCTTA--------------------TTGTAGATACCAC--TGAAGACGATCTGCGTGAAGTGTTTAACG-AGAGTGGGGAAATT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCAGCG---------CAATAGCTCGGGACGTGCCATTCTGGTGTCGAATCTGACCAACAGTGAGTTGAATAA---------------------------------------------------------------------------------------------------------------------------------------------------AACAGAGATC-----------------------------------AAA------------GTC----A--------AGAATCTAATTATTTCACTTTAATCATTTCTTTAGATACCAC--CGAAGAGCAGCTGCGGGAAGTGTTTGGCC-AAAACGGTGACATC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGACCG---------------TTCTAATAAGACCATTTTGATCACAAATTTAGCCAAAGGTGAGTGTTGGCA-A--------------TTA------------------T-C--------------------------------------------------------------A---TTTTTCTACCA----------------------------------------T----------------------------A--------------------TGGTTTA-T-TAAATGTCATCT-----------------TCATTCATGCAGATGCCAC--TGAAAGTGATCTTCGAGAAGTGTTTGAAA-AGAGCGGCGAGATC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................................................................GAAGTGTTTGAAA-AGAGCGGC......	21	1	1.00	1	0	1	0	0	0	0
..............................GACCATTTTGATCACAAATTT............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................GAGTGTTGGCA-A--------------TTA------------------T-C--------------------------------------------------------------A---TTTTTCTA.....................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................C--TGAAAGTGATCTTCGAGAA.........................	20	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CTTCGAGAAGTGTTTGAAA-AG............	21	1	1.00	1	0	0	0	0	1	0
......................TCTAATAAGACCATTTTGAT.....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GTTTGAAA-AGAGCGGCGAGATC	22	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AGTGTTTGAAA-AGAGCGGCGAGAC.	24	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TGTTTGAAA-AGAGCGGCGAGATC	23	1	1.00	1	0	1	0	0	0	0

droBip1

CGAGGT---------------TTCTAATAAGAGCATTTTGATTACAAATTTAGCCTCAGGTAAGTTTTTTG---CC-------ATT----------------------------------------------------------------------------------------TTGGAC--------TTT-------TCA----------------------------------------------AG--------TA--------------------TGGTTTA-T-CAAATTTTATTC-----------------CCATCCATGTAGATGCCAC--TGAAAGTGATATTCGAGAGGTGTTCCAAA-AGAGCGGCGAGATC	Size	Hit Count	Total Norm	Total
No Reads

dp5

CACCTT---------CAACACATCGCCGCGAACCGTTCTGGTGACAAATCTTGCCGCAGGTGGGTTTTTCCCC-CTCCCCATTCCCAG------------------CAC----------------------------------------------------------------------C--------TTT-------TCC----------------------------------------------ATA--CT-A------ATATTTTTGTTCT-----------TTTAC----------TAT--------------------TTGTAGATGTGAC--TGAGAGCGACCTACAGGAATTGCTTGGTG-AGAGCGGTAAGATC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................CTACAGGAATTGCTTGGTG-AGAGC.........	24	1	4.00	4	0	1	1	0	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AGGAATTGCTTGGTG-AGAGCGGT......	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TTGCTTGGTG-AGAGCGGTAAGAT.	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AGAGCGACCTACAGGAAT........................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................CACATCGCCGCGAACCGTTCTGGT.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TACAGGAATTGCTTGGTG-AGAGC.........	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................GACCTACAGGAATTGCTTG..................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

CACCTT---------CAACACATCGCCACGAACCGTTCTGGTGACAAATCTTGCCGCAGGTGGGTTTTTCCCC-CTCCCCATTCCCAG------------------CAC----------------------------------------------------------------------C--------TTT-------TCC----------------------------------------------ATA--CT-A------ATATTTTTGTTCT-----------TTTAC----------TAT--------------------TTGTAGATGTGAC--TGAGAGCGACCTACAGGAATTGCTTGGTG-AGAGCGGTAAGATC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................AACACATCGCCACGAACC.............................................................................................................................................................................................................................................................................................................................................................	18	1	8.00	8	7	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................ATGTGAC--TGAGAGCGACCTACAGGAAT........................	27	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AGATGTGAC--TGAGAGCGACCTACAG............................	25	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CCTACAGGAATTGCTTGGT................	19	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GAC--TGAGAGCGACCTACAGGA..........................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................GACCTACAGGAATTGCTTGGTG-..............	22	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................GTGAC--TGAGAGCGACCTACA.............................	20	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................GACCTACAGGAATTGCTTGGT................	21	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AATTGCTTGGTG-AGAGCGGTA.....	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CTACAGGAATTGCTTGGTG-AGAGCGGT......	27	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................AGATGTGAC--TGAGAGCGACCTACAGG...........................	26	1	1.00	1	1	0	0	0	0	0
.....................ATCGCCACGAACCGTTCTGG......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGAC--TGAGAGCGACCTACAGGA..........................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AGATGTGAC--TGAGAGCGACCT................................	21	1	1.00	1	1	0	0	0	0	0
............................CGAACCGTTCTGGTGACA.................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
....................CATCGCCACGAACCGTTCT........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GATGTGAC--TGAGAGCGACCTACAGGA..........................	26	1	1.00	1	1	0	0	0	0	0

droWil2

CGAATTATGTTCA--TCAGACCTCGGCACGTACCATTTTGGTTAAAAATTTGGCCTATGGTAAGCTTAAACCG-TT-------TCA------TTATCTGGCCCGCTTA----ACTTATTTAAATTCCTAAA---TTCAATTTTAGATAATAGATATTTTAACATATTTACCATTTTATAC-------------------------------------------------------------------------T-T------ATATTTT------------A----T--------TTACTTGTT--------------------TCTTAGGAGTTTC--TGAAGACGATTTGAAGACCTTGTTCGGCA-AATCCGGTGAAATC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................................................................................................................................................................................GACCTTGTTCGGCA-AATCCGGT......	22	1	5.00	5	0	0	2	3	0
..............................................................................................................................................................................................................................................................................................................................................................TGAAGACCTTGTTCGGCA-AATCCGGT......	26	1	3.00	3	0	0	0	3	0
...............................................................................................................................................................................................................................................................................................................................................TC--TGAAGACGATTTGAAGACC.........................	21	1	2.00	2	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GAAGACCTTGTTCGGCA-AATCCGGT......	25	1	2.00	2	0	0	2	0	0
..................................................................................................................................................................................................................................................................................................................................................................GACCTTGTTCGGCA-AATCCGGTGA....	24	1	2.00	2	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................GGAGTTTC--TGAAGACGATT.................................	19	1	2.00	2	0	0	1	1	0
.............................................................................................................................................................................................................................................................................................................................................................TTGAAGACCTTGTTCGGCA-AATCCGGT......	27	1	2.00	2	0	0	1	1	0
.................................................................................................................................................................................................................................................................................................................................................................AGACCTTGTTCGGCA-AATCCGGTGA....	25	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................TTC--TGAAGACGATTTGAAGACCTTGT.....................	26	1	1.00	1	0	1	0	0	0
..................................................................................................................................................TAATAGATATTTTAACAT...........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
......ATGTTCA--TCAGACCTCGG.....................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..AATTATGTTCA--TCAGACC.........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.....................CTCGGCACGTACCATTTTG.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................TC--TGAAGACGATTTGAAGACCT........................	22	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TGAAGACCTTGTTCGGCA-AATCCGG.......	25	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAGACCTTGTTCGGCA-AATCCGGT......	24	1	1.00	1	0	1	0	0	0
...ATTATGTTCA--TCAGACCTCGGCACGT................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................TC--TGAAGACGATTTGAAGACCTTGTT....................	26	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................GACGATTTGAAGACCTTGTTCGGCA-..............	25	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................GAGTTTC--TGAAGACGATTTGAAGACC.........................	26	1	1.00	1	1	0	0	0	0
.......................CGGCACGTACCATTTTGGTTA...................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................TGAAGACCTTGTTCGGCA-..............	18	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................GTTTC--TGAAGACGATTTGAA.............................	20	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................TTGAAGACCTTGTTCGGCA-AATCCGG.......	26	1	1.00	1	0	1	0	0	0
...........CA--TCAGACCTCGGCACGTACCATTTTG.......................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................TTC--TGAAGACGATTTGAAGA...........................	20	1	1.00	1	0	0	0	1	0
.........TTCA--TCAGACCTCGGCACGT................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
....................CCTCGGCACGTACCATTTTGGT.....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.........TTCA--TCAGACCTCGGCACGTACCATTT.........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
...ATTATGTTCA--TCAGACCTCGG.....................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................C--TGAAGACGATTTGAAGACCT........................	21	1	1.00	1	0	0	0	1	0
.....................CTCGGCACGTACCATTTTGGTTA...................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
....................CCTCGGCACGTACCATTTTGGTTA...................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
............A--TCAGACCTCGGCACGTACCATTTTG.......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0

droVir3

GGAAAAGTATCGTTACAGCTCATGCGGGCGCACCATTCGGGTAACAAACTTAGCTCCAGGTGCGTTTATTATA-CAA----------------------------------ATT-----------------------------------------------------------------TTGATC---A--------------GT-----------G--TGACA-----T-----------------TTAC---TAATTTC-----T-----------------------------TAAAT-----------------TCTTTTGTTTAGGCGTCGA--AGAGGAGGATCTTAATGAGCTGTTCAAAA-AAGCGGGCGAAATT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................................................................................................................GTCGA--AGAGGAGGATCTTAATGAGC........................	25	1	4.00	4	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CTTAATGAGCTGTTCAAAA-AA............	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GTTACAGCTCATGCGGGCGCACC.............................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ATCGTTACAGCTCATGCGGGC..................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ATGCGGGCGCACCATTCGGGT.....................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GGAGGATCTTAATGAGCT.......................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GA--AGAGGAGGATCTTAATGAGC........................	22	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TGTTCAAAA-AAGCGGGCG.....	18	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AAGTATCGTTACAGCTCATGCGGGC..................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................GCTGTTCAAAA-AAGCGGGCG.....	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................GCTGTTCAAAA-AAGCGGGCGAAATT	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AAAGTATCGTTACAGCTCATGCG.....................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CAGCTCATGCGGGCGCACCA............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGTCGA--AGAGGAGGATCT................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ATCGTTACAGCTCATGCGGG...................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................A--AGAGGAGGATCTTAATGAGC........................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GTTACAGCTCATGCGGGC..................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................GAGGATCTTAATGAGCTGTTCAA.................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AGAGGAGGATCTTAATGA..........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CTGTTCAAAA-AAGCGGGCG.....	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................GTGCGTTTATTATA-CAA----------------------------------ATT-----------------------------------------------------------------TTGATC---A--------------....................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GA--AGAGGAGGATCTTAATGAGCTGTT....................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CAAAA-AAGCGGGCGAAATT	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CGA--AGAGGAGGATCTTAATGAGCT.......................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................AGCTCATGCGGGCGCACCA............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TATCGTTACAGCTCATGCGGGCGCACCAT...........................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CTGTTCAAAA-AAGCGGGC......	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GCGGGCGCACCATTCGGGTAAC..................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TTCGGGTAACAAACTTAGCTCCA.....................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AGCTGTTCAAAA-AAGCGGGCG.....	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................CGGGTAACAAACTTAGCT........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GGAAAAGTATCGTTACAG.............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GCGCACCATTCGGGTAACA.................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGTTACAGCTCATGCGGGC..................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CTTAATGAGCTGTTCAAAA-..............	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GTCGA--AGAGGAGGATCTTAATGAGCT.......................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................AAAA-AAGCGGGCGAAATT	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....AGTATCGTTACAGCTCATGCGG....................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CGA--AGAGGAGGATCTTAATGAGC........................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GTATCGTTACAGCTCATGCGGGC..................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................ATCTTAATGAGCTGTTCAAAA-A.............	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GCTCATGCGGGCGCACCATTCGG.......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCAATA---------CAGCTCCTCGCCCCGCTCAATTGTTGTGACAAATGTGGCTCCAGGTACGTGCGAGCA-C--------------CTTTT----------------T----------------------------------------------------------------G-------CTTATCA--------------C-------------------------------------------TTAC---CAATTCTAA--AT------------TAA----T--------TTATTGT----------------------CTTTAGGTGTCGAAGTAAGCAGCACCTAAATGAAATCTTTTCAGTAAGCTGGAGAAATC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............CAGCTCCTCGCCCCGCTC..............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..........................................GACAAATGTGGCTCCAGGT..................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..............................CTCAATTGTTGTGACAAATGTG...........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
......................................TTGTGACAAATGTGGCTCCAGGTGT................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................GTTGTGACAAATGTGGCTCCAGG...................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droGri2

CCACTA---------CAGTTCCTCCGTGCGCACCATTCTCGTAACAAACTTGCATCCCAGTGAGTGTACAAGA-GA-------------TTTATGTCTGAATTGAATAT----------------------------------------------------------------------C--------ATT-------ATG----------------------------------------------ATA--TT-A------ATCGTTA------------A----T--------TT-ATCTAT--------------------TTGCAGGTGTCGA--TGAGCAGCAGATAAATGATCTGTTCAGTG-AAGTCGGTGAGGTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....A---------CAGTTCCTCCGTGCGCACCA............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
........................................GTAACAAACTTGCATCCCAGTGTC...............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0
....................................TCTCGTAACAAACTTGCATCCC.....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
.................GTTCCTCCGTGCGCACCATTCTCGTAACA.................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0
.......................CCGTGCGCACCATTCTCG......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
.....................CTCCGTGCGCACCATTCTCGTA....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0

dsi_19478

3r:27141353-27141418 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads