ID:

dsi_19472

 Coordinate:

3r:10188032-10188289 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.4 -9.1 -8.9 -8.7

Flybase annnotation

exon [3r_10187689_10188031_+]; CDS [3r_10187689_10188031_+]; CDS [3r_10188290_10188519_+]; exon [3r_10188290_10188638_+]; intron [3r_10188032_10188289_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGAGGTGCTTAACGATCAGAATCTGTGGGCCGTTTGCGGTCGCTCAGCGGGTAAGTTGGATTCTCTTTACTACTCTCTCTTTTTTTGCTTATGATTTAATTTAATTTAATTAATCTGTTTCTCTACACACGATTCACTTTTGCATTTTAAGATATGGGTAAGTTCCTTGGAATAGGACACACGTAGCACTTACTAGATTTGCCCCTGCTTTTGATTGGAAACATTTAACACTGAAAAAGAAAATTAGCTAACTTTTTGAACCAACAGTCTGTACTCGTTGACTAACGATTTATAACTTAACCTTTTAGGTGTCGTATCCATGAAGGACGTCGACAGTCATTCCATATCGCTGGATGTG
*****************************************************************************************************************************************************************..........((.(((((.((............((....((.....(((((...((...........))....))))).......))...)).............)).))).)).))******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 GSM343915
embryo
.............................................................................................................................................................CTATGTTCCTTGGAACAGGAC.................................................................................................................................................................................... 21 3 1 90.00 90 40 33 1 12 0 4 0 0 0 0 0 0
...............................................................................................................................................................ATGTTCCTTGGAACAGGAC.................................................................................................................................................................................... 19 2 1 33.00 33 20 11 0 0 0 2 0 0 0 0 0 0
...................................................................................................................................................TAAGAGATGGGGAAGCTCC................................................................................................................................................................................................ 19 3 12 12.42 149 91 39 0 3 0 12 2 0 0 0 1 1
..............................................................................................................................................................TATGTTCCTTGGAACAGGAC.................................................................................................................................................................................... 20 2 1 11.00 11 6 0 2 0 2 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GTAGGACGTCGCCAGGCATT................. 20 3 6 8.17 49 0 0 49 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................TTCCATATCGCTGGATGT. 18 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................AGGACGTCGCCAGGCATT................. 18 2 8 2.88 23 0 0 19 0 2 0 1 0 0 1 0 0
...................................................................................................................................................TAAGAGATGGGTAAGCTC................................................................................................................................................................................................. 18 2 5 2.40 12 10 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CTAAGTTCCTTGGAACAGGAC.................................................................................................................................................................................... 21 2 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
.................................................................................................................................................................GTTCCTTGGAACAGGACA................................................................................................................................................................................... 18 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................AAGTTCCTTGGAACAGGA..................................................................................................................................................................................... 18 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GTAGGACGTCGCCAGTCATT................. 20 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAGTTCCTTGGAACAGGAC.................................................................................................................................................................................... 19 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................ATGTTCCTTGGAATAGGAC.................................................................................................................................................................................... 19 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TATGTTCCTTGGAACAGGACG................................................................................................................................................................................... 21 3 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TATGTTCCTTGGAACAGGA..................................................................................................................................................................................... 19 2 2 1.50 3 0 0 1 0 0 1 0 1 0 0 0 0
...............................................................................................................................................................ATGTTCCTTGGAACAGGACG................................................................................................................................................................................... 20 3 2 1.50 3 0 3 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TGTAAGTTCCTTGGAACAGGAC.................................................................................................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TAGGACGTCGCCAGTCATT................. 19 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................GTATCCATGAAGGACGTCGACAGT..................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TATGTTCCTTGGAACAGGACA................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................CAAGTTCCTTGGAACAGGAC.................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GTAGGACGTCGCCAGTCAT.................. 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................CAACAGTCTGTACTCGT................................................................................ 17 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................ATCCATGAAGGACGTCGACAGT..................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GTTCCTTGGAACAGGAC.................................................................................................................................................................................... 17 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AGTTCCTTGGAACAGGA..................................................................................................................................................................................... 17 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................GTAAGTTCCTTGGAACA........................................................................................................................................................................................ 17 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................GCCATTCCATATCGCTGGAT... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................CTATGTTCCTTGGAATAGGAC.................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CAAGTTCCTTGGAACAGGA..................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........AACGATCAGAATCTGTGGGCC....................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................AAGGACGTCGACAGT..................... 15 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................GTTCCTTGGAATAGGA..................................................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CTATGTTCCTTGGAACAGGA..................................................................................................................................................................................... 20 3 4 0.75 3 0 0 0 0 0 3 0 0 0 0 0 0
................................................................................................................................................................TGTTCCTTGGAACAGGAC.................................................................................................................................................................................... 18 2 4 0.75 3 1 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GTAGGACGTCGTCAGGCATT................. 20 3 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAGTCCCTTGGAATAGGG..................................................................................................................................................................................... 18 2 5 0.60 3 0 0 0 0 3 0 0 0 0 0 0 0
.................................................................................................................................................................GTTCCTTGGAACAGGA..................................................................................................................................................................................... 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GGACGTCGCCAGTCATT................. 17 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................TAAGTAGGGTTCTCTTGACTA.............................................................................................................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................TTAAGAGATGGGGAAGCTCC................................................................................................................................................................................................ 20 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GGACGTCGTCAGTCATT................. 17 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................AGGACGTCGCCAGTCATT................. 18 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CTAAGTTCCTTGGAACAGG...................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TAGGACGTCGTCAGTCAT.................. 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TAGGACGTCGCCAGTCAT.................. 18 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................TTAAGAGATGGGGAAGCTC................................................................................................................................................................................................. 19 3 13 0.38 5 4 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................AGGACGTCGTCAGGCAT.................. 17 2 8 0.38 3 0 0 3 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TGTAGGACGTCGCCAGGCATT................. 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................AGGACGTCGTCAGGCATT................. 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GGACGTCGCCAGTCAT.................. 16 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTGCTTTTGATTCGAAA......................................................................................................................................... 17 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GTAGGACGTCGTCAGGCAT.................. 19 3 10 0.30 3 0 0 3 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................AGTAGGACGTCGCCAGTCAT.................. 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TATGTTCCTTGGAACAGG...................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................TCTCGTATCGATGAAGAACG............................. 20 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................TGTCGAATCCAAGAAGGGCG............................. 20 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TATGTTTCTTGGAACAGGAC.................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TCGTATCGATGAAGAACGTA........................... 20 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................CCAAGTTCCTTGGAACAGGA..................................................................................................................................................................................... 20 3 9 0.22 2 0 0 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................CTCGTATCGATGAAGAACG............................. 19 3 10 0.20 2 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................AGGACGCCGCCAGTCAT.................. 17 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GTTCCTTGGAACAGGACGCC................................................................................................................................................................................. 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TAAGACATGGGGAAGCTCC................................................................................................................................................................................................ 19 3 10 0.20 2 0 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTCCTTGGAACAGGACG................................................................................................................................................................................... 17 2 16 0.19 3 0 0 0 0 1 0 0 0 0 2 0 0
..............ACCAGAATCTGTTGGACGTTT................................................................................................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0
...............ATAGAACCTGTGGGCCGTTT................................................................................................................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................CTAGTTCCTTGGAACAGGAC.................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGTTCCTTGGAACAGGA..................................................................................................................................................................................... 17 2 14 0.14 2 0 0 0 0 0 0 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TAGGACGTCGTCAGGCATT................. 19 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................ATGCTCCTTGGAACAGGAC.................................................................................................................................................................................... 19 3 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TCTAAGTTCCTTGGAACAGG...................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................ATCGATGAAGGACGT............................ 15 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GGACGTCGTCAGGCATT................. 17 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CTAAGATATGGGGAAGCT.................................................................................................................................................................................................. 18 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GGACGTCGTCAGTCA................... 15 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GTTCCTTGGAACAGG...................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................CTATGTTCCTTGGAACAGG...................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................ATGTTTCTTGGAACAGGAC.................................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................ATATTCCTTGGAACAGGAC.................................................................................................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CTAAGAGATGGGGAAGTTC................................................................................................................................................................................................. 19 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CTATGTTCCTTGGAACAG....................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GGACGTCGTCAGGCAT.................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GTAGGACGTCGCCAGT..................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................TCCTTGGAACAGGAC.................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

GCTCCACGAATTGCTAGTCTTAGACACCCGGCAAACGCCAGCGAGTCGCCCATTCAACCTAAGAGAAATGATGAGAGAGAAAAAAACGAATACTAAATTAAATTAAATTAATTAGACAAAGAGATGTGTGCTAAGTGAAAACGTAAAATTCTATACCCATTCAAGGAACCTTATCCTGTGTGCATCGTGAATGATCTAAACGGGGACGAAAACTAACCTTTGTAAATTGTGACTTTTTCTTTTAATCGATTGAAAAACTTGGTTGTCAGACATGAGCAACTGATTGCTAAATATTGAATTGGAAAATCCACAGCATAGGTACTTCCTGCAGCTGTCAGTAAGGTATAGCGACCTACAC
********************************************************************************..........((.(((((.((............((....((.....(((((...((...........))....))))).......))...)).............)).))).)).))***************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
........................................................................................................................................................................................................................................................................................................................................CAGCTGTCAGTAAGGTATAGCG........ 22 0 1 1.00 1 1 0 0 0 0 0 0
...CCACGAATTGCTAGTCTTAGA.............................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TGCAGCTGTCAGTAAGGTGTA........... 21 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................AACCTTATCCTGTGTGCATCG........................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................CTGCAGCTGTCAGTAAGGTAT............ 21 0 1 1.00 1 0 0 1 0 0 0 0
..........................CCAGGCAAACGCTAGCGA.......................................................................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................................GGAAAATCCAAAGCAT.......................................... 16 1 4 0.50 2 0 0 0 2 0 0 0
............................................................................................................................................................................................................................................TTCTGTTAAGCGATTGCAAA...................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 1 0
............................................................................................................................................................................................GAATGATCTAACCGGCG......................................................................................................................................................... 17 2 6 0.17 1 0 0 0 0 1 0 0
.............................................................................AGAAAAAAACTCATACTAGAT.................................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................CATGATCAACTGATAGC....................................................................... 17 2 10 0.10 1 0 0 0 0 0 1 0
............................................................AAGAGAAATGTTGGGAG......................................................................................................................................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 0 1
.........................................CGAGTCCCCCATACAA............................................................................................................................................................................................................................................................................................................. 16 2 15 0.07 1 1 0 0 0 0 0 0
....................................................................................................................................AAGTGAAAACGGAAA................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0

Generated: 04/24/2015 at 10:36 AM