ID:

dsi_19470

 Coordinate:

3l:11355512-11355661 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.3 -28.3 -28.2

Flybase annnotation

exon [3l_11355316_11355511_-]; CDS [3l_11355316_11355511_-]; intron [3l_11355512_11369188_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATTTCGATTTAAACGGGGGGCCAACTGAACTCTTCAGTAAGGCAACATACTTATATTCGAACTCCAGAGGACTCATTTCCTGGGACGTGCTCACTGCAAAGTGGAGCATCTGCAGGCCTGTCTACGTGAGCCGAAGGACTCCCAGCTGATACCCCAAAACTAATGCCAAACTCTGCCCGTTTTTCTCCTCCAATTGCAGTGCACTCCCTGCCGCATCTCACGGTGCTGAGCCTCTCCGGCTGCAGCAAA
**************************************************.........((((..(((((....((((...((((..(((.((((((......((((..(((...(((...((.....)))))...)))))))))).)))))))))).....)))).....)))))...)))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
.........................................................................................................................................GACTCCCAGCTGATACCCC.............................................................................................. 19 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................GATTCCCAGTTGATCCCCCA............................................................................................. 20 3 7 0.29 2 0 2 0 0 0
........................................................TTGGAACTCTAGAGGACTCC.............................................................................................................................................................................. 20 3 5 0.20 1 0 0 1 0 0
...................................................................................GGACGTGATCACTGC........................................................................................................................................................ 15 1 10 0.10 1 0 0 0 1 0
...................................................................................GGACGTGATCACTGCTA...................................................................................................................................................... 17 2 11 0.09 1 0 0 0 1 0
....................................................................................GACGTGATCACTGTAAAGA................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 1
................................................................................................................................................................................CCCGTTTATCTCCACCA......................................................... 17 2 13 0.08 1 0 0 1 0 0

Anti-sense strand reads

TTAAAGCTAAATTTGCCCCCCGGTTGACTTGAGAAGTCATTCCGTTGTATGAATATAAGCTTGAGGTCTCCTGAGTAAAGGACCCTGCACGAGTGACGTTTCACCTCGTAGACGTCCGGACAGATGCACTCGGCTTCCTGAGGGTCGACTATGGGGTTTTGATTACGGTTTGAGACGGGCAAAAAGAGGAGGTTAACGTCACGTGAGGGACGGCGTAGAGTGCCACGACTCGGAGAGGCCGACGTCGTTT
**************************************************.........((((..(((((....((((...((((..(((.((((((......((((..(((...(((...((.....)))))...)))))))))).)))))))))).....)))).....)))))...)))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
........................................................................................................................................................................TTTGAGACCGGCAATAAGAG.............................................................. 20 2 1 1.00 1 1 0 0 0 0
...................................................AATATTAGCTTCAGGTCTACT.................................................................................................................................................................................. 21 3 4 0.50 2 2 0 0 0 0
.....................GGTTGACTTGAGAAGA..................................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 1 0 0
.....................................................TCTAAGCTTGAGGTCT..................................................................................................................................................................................... 16 1 6 0.33 2 0 2 0 0 0
.....................................................TCTAAGCTTGAGGTC...................................................................................................................................................................................... 15 1 11 0.09 1 0 1 0 0 0
.....................GGTTGACTTGATAAG...................................................................................................................................................................................................................... 15 1 11 0.09 1 0 1 0 0 0
..........................................................................................................................................GGAGGTTCCACTATGGGGT............................................................................................. 19 3 20 0.05 1 0 0 0 1 0
....................................................................................................................................................................ACGGGTTGCGACGGGC...................................................................... 16 2 20 0.05 1 0 0 0 1 0
...................................................................................................................................................ACTATGGGGATGTGAT....................................................................................... 16 2 20 0.05 1 0 0 0 0 1
.......................................................................TCAATAAAGGACCCTG................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 02:14 AM