ID:

dsi_19463

Coordinate:

3r:4360306-4360365 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4359941_4360305_-]; CDS [3r_4359941_4360305_-]; CDS [3r_4360366_4360695_-]; exon [3r_4360366_4360763_-]; intron [3r_4360306_4360365_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------################################################## TGTCCTTCAAAGTGGTCCGCCTGCCGCGCGGTCCATCGCTTACTTTTAAGGTTTGTTTGTTTTTCGCTTAGTTCCACTGGGTATTTGACCGCGAAGTTATCCTTTGGCAGGTTCACCAGTTCACCCTGGCCAGAGATGTGATCTCGCTAAGCAAAAAGCA ************************************************.......................(((..(((((((((....))))..)))))..)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
..........................................................................................................TAAGGTTCACCAGTTCACCCTGGCCAGA..........................	28	2	1	2.00	2	1	1	0	0	0	0
.................................................................................................................CACCAGTTCACCCTGGCCAGAGATGT.....................	26	0	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................TTCACCCTGGCCAGAGATGTGATCTCGC.............	28	0	1	1.00	1	1	0	0	0	0	0
..........................CGCAGTCCATCGCTT.......................................................................................................................	15	1	6	0.17	1	0	0	0	1	0	0
.................................................................................................TAGCCTTTGGCAGGTACG.............................................	18	3	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................................GTGATCTCGCGGAGC........	15	2	20	0.05	1	0	0	0	0	1	0

Anti-sense strand reads

ACAGGAAGTTTCACCAGGCGGACGGCGCGCCAGGTAGCGAATGAAAATTCCAAACAAACAAAAAGCGAATCAAGGTGACCCATAAACTGGCGCTTCAATAGGAAACCGTCCAAGTGGTCAAGTGGGACCGGTCTCTACACTAGAGCGATTCGTTTTTCGT ************************************************.......................(((..(((((((((....))))..)))))..)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR553486 Makindu_3 day-old ovaries	M024 male body	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	M023 head
..................................................................................................TAGGAAGGCGTCCAAGTGGTCTA.......................................	23	3	1	1.00	1	1	0	0	0	0	0
..............................................................ATGCGAATCAAGGTG...................................................................................	15	1	3	0.33	1	0	1	0	0	0	0
..................................................................................................TAGGAAAGCGTCCAAGTGG...........................................	19	1	3	0.33	1	1	0	0	0	0	0
......................CGGCTCGCTAGGTGGCGAAT......................................................................................................................	20	3	5	0.20	1	0	0	0	1	0	0
.............................................................................................................CCAAGTCGTCAAATGGGCC................................	19	3	16	0.13	2	0	0	2	0	0	0
.........................................................AAAGAATGCGAATCAAGGT....................................................................................	19	3	20	0.10	2	0	1	0	0	1	0
.............................................................................................................CCAAGTCGCCAAATGGGAC................................	19	3	10	0.10	1	0	0	1	0	0	0
.............................................................................................................CCAAGTGGCCAAATGGGCC................................	19	3	12	0.08	1	0	0	0	0	0	1
.....................................................................................................................................TCTACACTATGGCGAT...........	16	2	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................TCTCTCCCCTAGAGCG.............	16	2	20	0.05	1	0	1	0	0	0	0

Generated: 04/24/2015 at 03:11 AM