ID:

dsi_19407

 Coordinate:

x:14774207-14774455 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.0 -11.9 -11.6 -11.6

Flybase annnotation

exon [x_14774456_14774653_-]; CDS [x_14774456_14774507_-]; exon [x_14774072_14774206_-]; CDS [x_14774072_14774206_-]; intron [x_14774207_14774455_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGCAATTGCCGAGCACGATAACGTCTTCATCTTTGTGCCAAATCTGATCGGTGAGTGCTGTTTGTAGTTTTTATTCTGCTCTCCAGCTAGGTAAACAAATCGCATGTTCGATTTATGCGGCGCAATAATAGCGATTCTAGTGTTCCCTAATTGGATTAATAGGGGCTGTTTGGCAGCCAGTGCAATGCGGAGCGCAAGTTCAGCGATAAGAGCCCCTTCGTCCACCCAATTGAGTCACCCCCAATGATTCCATACGTATGATGCACGCATATGTGATGATTTATATTGATCTTTTCCAGGCTATGCCCGCATCGTTCTGGCCCTGATCGCCTTCTGGTTCATGTCCACC
*****************************************************************************************************((..((((((((......((((................)))).....))))))))........))*************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.....................................................................................................GCATGTTCGATTTATGCGGCG................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................AATTGGATTAATAGGGGC....................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................GGCCCTGATCGCCTTCTGGTT.......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................TAACGTCTTCATCTTTGTGCCAA.................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................ATCGGCTATGCCCGCATCGTTCTGGCC........................... 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................GCTAGGTAAACAAATC........................................................................................................................................................................................................................................................ 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................CAGCGATAAGAGCCCCTTCGTC............................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................GGCTATGCCCGCATCGTTCTGGCCC.......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................ATGCCCGCATCGTTCTGGC............................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GATCCCCTTCGTCCACCCCA........................................................................................................................ 20 2 2 0.50 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................CGAGCCCCATCGTCCACCCCA........................................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................................................................TTCTGGTTCAGGTCCA.. 16 1 8 0.25 2 0 0 0 0 0 2 0 0 0
.........................................................................................................................................................GATTAATAGGGACTGTC................................................................................................................................................................................... 17 2 11 0.18 2 0 0 0 0 0 0 0 2 0
..........................................................................................................................................................ATTAATAGGGACTGT.................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................ATTAATAGGGACTGTC................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 2 0 0 0
...................................................................................................................................................................................................................TCCCCTTCGTCCACC........................................................................................................................... 15 1 18 0.06 1 0 0 0 0 0 1 0 0 0
.......................................................................................................ATGTTCGATTCATGCTGCT................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
...................................................................................................TCACATGTTCGATCTA.......................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CCGTTAACGGCTCGTGCTATTGCAGAAGTAGAAACACGGTTTAGACTAGCCACTCACGACAAACATCAAAAATAAGACGAGAGGTCGATCCATTTGTTTAGCGTACAAGCTAAATACGCCGCGTTATTATCGCTAAGATCACAAGGGATTAACCTAATTATCCCCGACAAACCGTCGGTCACGTTACGCCTCGCGTTCAAGTCGCTATTCTCGGGGAAGCAGGTGGGTTAACTCAGTGGGGGTTACTAAGGTATGCATACTACGTGCGTATACACTACTAAATATAACTAGAAAAGGTCCGATACGGGCGTAGCAAGACCGGGACTAGCGGAAGACCAAGTACAGGTGG
***************************************************************************************************************************************************************************************((..((((((((......((((................)))).....))))))))........))***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
..........................................................................................................................................TCAAAACCGATTAACCTAATTAT............................................................................................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0
...................................................................AGAAATAAGACGGGAGGTC....................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................CAAGGCCGGGACTGGCGAAAG............... 21 3 3 0.33 1 0 0 1 0 0 0 0
.............................AGAAACAGGGTTTAGGCT.............................................................................................................................................................................................................................................................................................................. 18 2 5 0.20 1 0 0 0 1 0 0 0
............................................................................ACGAGAGGTCGATTC.................................................................................................................................................................................................................................................................. 15 1 9 0.11 1 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................................................................................GGGACTGGCGGAAGA.............. 15 1 9 0.11 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................CGGGCGTAGCAAGAGATGG.......................... 19 3 13 0.08 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................................................................AGACCTAGTACAGGT.. 15 1 17 0.06 1 0 0 0 0 1 0 0
..............TGCTATTACAGGAGTAG.............................................................................................................................................................................................................................................................................................................................. 17 2 19 0.05 1 0 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................................TCGATACGGGCATAGAAAG................................ 19 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:14774157-14774505 - dsi_19407 GGCAATTGCCGAGCACGATAACGTCTTCATCTTTGTGCCAAATCTGATCGGTGAGTG-C-TGTT-------------------------------------------TGTAGTTTTTATTCT-------GCTCTCC------------------------AG----------CT--AGGTAAACAAATCGCATG---TTCGATTTATGCGGCG----------CAATAA---------TAGCGAT-----------------------------------------------------TCT-AGTGTTC-----CCTAATTGGATTAA-----------TAGGGGCTGT---------TTGGCAGCCAGTGCAATGCGG-AGCGC-------AAGTTCAGCGATAAGAG---CCC-CTTCGTC-----C------ACC------C-AATTG-----AGTCA-------------------------------------------------CCC---CCAATGATTCC------------------A---------------TACGTATGATGCACGCAT--A-----------------------------------------------TGTGATGAT-----TTAT-ATTGAT---CT-TT-------TCCAGGCTATGCCCGCATCGTTCTGGCCCTGATCGCCTTCTGGTTCATGTCCACC
droSec2 scaffold_37:180829-181178 - GGCAATTGCCGAGCACGATAACGTCTTCATCTTTGTGCCAAATCTGATCGGTGAGTG-C-TGTT-------------------------------------------TGTAGTTTTTATTCT-------GCTCTCC------------------------AG----------CT--AGGTAAACAAATCGCA-G---TCCGATTTATGCGGCG----------CAATAA---------TAGCGAT-----------------------------------------------------TCT-AGTGTTC-----CCTAATTGGATTAA-----------TAGGGGCTGT---------TTGGCAGCCAGTGCAATGCGG-AGCGC-------AAGTTCAGCGATAAGAG---CCC-CTTCGTC-----C------ACC------C-AATTG-----AGTCA-------------------------------------------------CCC---CCAATGATTCC------------------A---------------TACGTATGATGCACGCAT--A-----------------------------------------------TGTGATGAT---CTTTAT-ATTGAT---CT-TT-------TCCAGGCTATGCCCGCATCGTTCTGGCTCTGATCGCCTTCTGGTTCATGTCCACC
dm3 chrX:15597302-15597652 - GACAATTGCCGAGCACGATAACGTCTTCATCTTTGTGCCAAATCTGATCGGTGAGTGGC-TGTT-------------------------------------------TGTAGGTTTTATTCC-------GTGCTCC------------------------AG----------CT--AGGTAAACAAATCGCATG---TTCGATTTATGCGGCG----------CAATAA---------TAGCGAT-----------------------------------------------------TCT-AGTGTTC-----CCTAATTGGATTAA-----------TAGGGGCTGT---------TTGGCAGCTAGTGCAATGCGA-AGCGC-------AAGTTCAGCGATAAGAG---CCG-CTTCGTC-----C----A-ACC------C-AATTG-----AGTCA-------------------------------------------------CCT---CCAATGATTCT------------------A---------------TACGTATGATGCACGCAT--A-----------------------------------------------TGTGCTGAT-----TTAT-ATTGAT---CT-TT-------TCCAGGCTACGCCCGCATCGTTCTGGCCCTGATCGCCTTCTGGTTCATGTCCACC
droEre2 scaffold_4690:11440669-11441033 + GGCAATTGCCGAGCACGATAACGTCTTCATATTTGTGCCAAATCTGATCGGTGAGTA-C-TGTT-------------------------------------------TGGGGTTTTTATTCC-------GCGCTCC------------------------AG----------CT--AGGTAAACAAATCGCATG---TTCGATTTACGCGGCG----------CAATAA---------TAGCGAT-----------------------------------------------------TAT-AGTGTCT-----CCTAATTGGATTAA-----------TAGGAGCTGT---------TTGGCAACCTGTGCAATGCAG-GGCGC-------AAGTTCACCGATAAGAG---CAG-CGTTGTT-----C------ACC------C-AATTG-----AGTAA-------------------------------------------------CCC---CCGATGATTCC----------------GCAGCA-AAAACCATATACAAATATGAGGCACGAAT--C-----------------------------------------------TGCGATGAT-----TTAT-ATTGAT---CT-TT-------TCCAGGCTACGCCCGCATAGTTCTGGCCCTGATCGCCTTCTGGTTCATGTCCACC
droYak3 X:9802367-9802732 - GGCAATTGCCGAACACGATAACGTCTTCATCTTTGTGCCAAATCTGATCGGTGAGTG-C-TGTT-------------------------------------------TTTGGTTTTTATTCC-------GTGTTCC------------------------AG----------CT--AGGTAAACAAATCGCATG---TTCGATTTATGCGGCG----------CAATAA---------TAGCGAT-----------------------------------------------------TCT-AGTGTTT-----CCTAATTGGATTAA-----------TAGGCGCTGT---------TTGGCAACCTGTGAAATGCAG-GGCGC-------AAGTTCACCGATAAGAG---CAG-CGCCGTC-----C------ACC------C-AATTG-----AGTCA-------------------------------------------------CCC---CCAATGATTTC----------------GCCCCAGAAAACCATATACATATATGATGCACGCAT--A-----------------------------------------------TGTGTTGAT-----TCAT-ATTGAT---CT-TT-------TCCAGGCTATGCCCGCATCGTTCTGGCCCTGATCGCCTTCTGGTTCATGTCCACC
droEug1 scf7180000409533:777087-777441 - GGCAATCGCCGAGCACGATAACGTTTTCATCTTCGTACCAAATTTGATCGGTGAGTC-T-TGTT-------------------------------------------T------TCTA-TAC-------GCGTTCC------------------------AGTGGGCTGAGGTA--AGGTAAACAAATCGCATG---TTCGATTTATGCGGCG----------CAGTTA---------TAGCGTT-----------------------------------------------------TCG-GGTGTTC-----TCTAATTGGATTAT-----------TGAGTGCTGC---------TTGGCAACCTGTGAAATGCAA-GGCG----------GTTCAACGATAAGTG---AAG-T---GTC-----C------ACC------C-CACTG-----AGTCA-------------------------------------------------CACAATCCGATGTTTCCCC--CCA--A--------A---------------TATATTTGAAGTATATAT--A---------TCGC------------------------------------CGCTCA-------TAT-CTTGAT---AT-TT-------TCCAGGCTATGCCCGCATCGTTCTGGCTTTGATCGCGTTCTGGTTTATGTCCACC
droBia1 scf7180000302421:2416931-2417279 - GGCAATTGCCGAGCACGACAACGTCTTCATCTTTGTGCCAAACTTGATCGGTGAGTG-T-GGTG-------------------------------------------C----------------TTT-G------------------------------------------ATA--AGGTAAACAAATCGCGCG---ATCGATTTGTGCGGCG----------CAGTTA-------------------------------------------------------------------------GGTGTTCCACTGGCTAATTGGATTTG-----GGCTTCTGGGGGATGTT--------TTGGCAACCTGTGAAATGCAG-GGCGC-------AAGTTCACCGACAGCGGAAGCCG------CC-----G------CCC------C-CATTG-----AGTCA------TT------------CCCCGC----C---CACCACC--------------GCAAT-----TCCCC--TTGGCTCTGGGATTCA------------------GGAA----GCAGATG-------------------------------------------------GACTGA-------TAC-ACTGACTCTAT-TT-------TCCAGGCTATGCCCGCATCATCCTGGCCCTGATCGCGTTCTGGTTCATGTCCACC
droTak1 scf7180000415909:85339-85686 + GGCAATTGCCGAGCACGACAACGTCTTCATCTTTGTGCCAAATTTAATTGGTGAGTG-T-TGTG-------------------------------------------T----------------TTT-G-------------------------------GG----------CA--AGGTAAACAAATCGCACG---ATCGATTTATGCGGCG----------CAGTTA-------------------------------------------------------------------------GGTGTTC-----CCTAATTGGATTTG-----CATTTATGGGGGATGTT--------TTGGCAACCTGTGAAATGCAG-GGGGC-------AAGTTCACCGATAAGAAAAGCCG------CCTTTGCCTCC---CCCCCCCCCC-CATTG-----AGTCT-------T------------CCCCC-CTTA-----------CAA----AC-----------------CCC--TTAG---------------------ATAC-----TGAA----ACATATGG-----ACTTCGT------------------------------------CACTCA-------TTT-ATTGAC---CT-TT-------TCCAGGCTACGCCCGCATTGTTTTGGCCCTGATCGCCTTCTGGTTCATGTCCACC
droEle1 scf7180000491006:1099549-1099926 + GGCCATTGCCGAGCATGACAACGTCTTCATTTTTGTGCCAAATTTGATTGGTGAGTTGT-TGTG----TTGTTGTT-----GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT--------GTTTTTGAAGATCC------------------------AG----------ATTGGGGTAAACAAATCGCATG---TTCGATTTATGCGGCG----------CAGTTC---------AAGTGTT-----------------------------------------------------TTGGGGTGTTC-----CCTAATTGGATTTA-----------TAGGGGATGT---------TTGGCAACCTGTGCAATGCAG-GGCGC-------AAGTTCATCACCCACC---------------------------ACCCACCACCCAC-TG-----CCCCA--------------------------CTGC-----------CAATGTCAC-------------CCC----------------GAC---------------CCAGTCCGCGGCATAC------------------------------------------------------TAATGA-------CAT-ATTGAC---ATTTT-------TCCAGGCTATGCCCGCATTATTCTGGCCCTGATCGCGTTCTGGTTCATGTCCACC
droRho1 scf7180000779985:1561353-1561686 + GGCTATTGCCGAGCATGACAACGTCTTTATCTTCGTGCCAAATTTGATTGGTGAGTT-G-----------------------------------------------------TT--------GTTTTTTAAGATCC------------------------TG----------TG--GGGTAAACAAATCGTATG---ATCGATTTATGCGGCG----------CAGTTA---------TAGCGCT-----------------------------------------------------T-G-GGTGTTC-----CCTAATTGGATTAA-----------TAGGGGATGT----------TGGCAACCTGTGAAATGCAG-GGCGC-------AAGTTCACCGATATGTG---GCG-C---ACC-----C------ACC------C-ACC-----------------------------------------------A---T-GAATGCCACC----CCGATATTTCCCC--GCA--------------------------------------------TATTGATATGTATTCGC------------------------------------CACTGA-------TAT-ATTGAC---TT-TT-------TCCAGGCTATGCCCGCATCATTCTGGCCCTGATCGCGTTCTGGTTCATGTCCACC
droFic1 scf7180000454038:868780-869133 - GGCAATTGCCGAGCACGACAACGTCTTTATCTTTGTGCCAAATTTGATCGGTGAGTG-A-CGTT--------------------------------------GTTATTGTTGTT--------GTTTTTCAAGTTCC------------------------AT----------AG--GGGTAAACAAATCGCATG---TTCGATTTATGCGGCG----------CAGTTA---------TTGCGTT-----------------------------------------------------CTG-TGTGTTCC----CCTAATTGGATTTA------------AGGGGATGTTCG-GG---TTGGCAACCTGTGAAATGCAG-GGCGC-------AAGTTCACCGATATAGAGAGCCA------CC-----G-AACC-ACC-----------------------------------------------------C---CC-------------------TCGATGTCTTC-CAC--CTAG---------------------ATATTGATATGGGGAATACAT--A-----------------------------------------------T--ATTGA-------CAT-ATTGAC---TT-TT-------TCCAGGCTATGCCCGCATCGTTTTGGCATTGATCGCCTTCTGGTTCATGTCCACC
droKik1 scf7180000302621:565047-565427 - GGCCATAGCCGAGCATGACAACGTTTTCATTTTTGTGCCAAATTTGATCGGTGAGTT-G-TTTT-------------------------------------------TGTTGTAT-------GTTTTTGTCG----------------------------AATAGATTTCGGAG--GGGTAAACAAATCGAATAT--GTTGATTTATGGGCCACAAACCCACACAA-ACATACACACTTTGCCAT-----------------------------------------------------T--------TG-----TATAATTGGATTAG-----------TTGGG--TGTGCGGCGTTCCTGACAACCTGGAAG--CCCC-AGTCA-------AAGTCAAGGGGCAAGCG---ACACCCCGGCA-----A--------GAAACCCCCCT-TGCCCCTT----CTTCTGTT------------CCTCCT----C---CTCCTCC------------------------TCCTC--TTGG---------------------TTAT---------------------------------------------------------------------CGATGT------TTATAATTGAT---TT-TT---TTCCCACAGGCTATGCCCGCATCGTTTTGGCCTTGATCGCCTTCTGGTTCATGTCCACC
droAna3 scaffold_12929:2663706-2663970 + GGCAATTGCCGAGCATGACAACGTCTTTATCTTTGTGCCCAATTTAATTGGTGAGTA-T-TTTGCGTGT---TTTTGT---GTTTTTTCTGCTA-------------TATTATT--------GTTTT-T------------------------------------------ATC--ACGTAAACAAATCGAATATGGTGCCGTTTATGAAACA----------CAC-AATAG------AAGCTA------------------------------------------------------------TGTGG-----GCTAATTGGATTAG-----------C-GGCGA-------------TGGCAACCTGTGAAATGCGAAGGTGCAACGTAGAAGTTCAGGGGCACGGC---AC-------------------CTTGC------C-AC-----------CTTGTTC-------------------------C---CT-------------------TCAATGTCAGC-C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCC
droBip1 scf7180000395538:26656-26902 - GGCAATTGCCGAGCATGACAACGTATTTATCTTTGTGCCCAATCTGATTGGTGAGTG-ATATAGTGTGT---TTTTGTAATGTTTTCGTTGTTC-------------TATTGTT--------GTGTT-T------------------------------------------ATC--ACGTAAACAAATCGAATATGTTGCCGTTTATGAAACA----------TAG------------TAGTGAT-----------------------------------------------------CT-------GG-----GCTAATTGGATTAG-----------CAGC-GATGG----CG---ATGGCAACCTGTGAAATGCGAAGGTGCAACGCAGAAGTTCAGGGGCACAAC---AC-------------------CTT----------------------------------------------------------------------------------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GCCACC
dp5 XL_group1a:7981506-7981920 + GGCCATTGTCGAGCATGACAACGTCTTCATATTTGTGCCAAATTTGATTGGTAAGTT-T-TGGC-------------------------------------------G----------------------------GAGCGAATCGGTCGAGTCCCCCTC--TGGACTTTTGGA--ATGTATACATACC-----------------------------------------TGAACCCGTGTG-ATTGTTCCGGCTGATGGTGCTGGCGCTGGCTGTTGCGGGGAGGGGGCGGGTGCGC----CGTGGGG-----CCTAATTTAATTAGCTGTGTGCTT--GTGCGTTGT---------CATGCAACCTGTAAAATGCAC-ACTGG-------CAGTGCATGGACCAGCC---CCAGCCCAGCC-----C------AGG------C-CA--G-----AGTCGGCCTC-------------------------A---CA-------------------TCAATGTCACTTC--CCG--------------------------------------------TATCGATTGAGAT----------------------GCGA--------------CGCTGATGAATGTTTG-TTTGCT---CT-TCTCCCCGTTGCAGGCTATACACGCATCGTTTTGGCCCTGATTGCGTTCTGGTTCATGTCCACG
droPer2 scaffold_15:338554-338949 + GGCCATTGTCGAGCACGACAACGTCTTCATATTTGTGCCAAATTTGATTGGTAAGTT-T-TGGC-------------------------------------------G----------------------------GAGCGAATCGGTCGAGTCC-----------------------------------GCCT---CTGGACTTACGGAATG------TATACAT-ACCTGAACCCGTGTG-ATTGTTCCTGCTGATG------------GCTGTTGAGG----GGGGCGGGTGCGT----CATGGGG-----CCTAATTTAATTAGCCGTGTGCTT--GTGCGTTGT---------CATGCAACCTGTAAAATGCAC-ACTGC-------CAGTGCATGGACCAGCC---CCAGCGCAGCC-----C------AGC------C-CA--G-----AGTCGGCCTC-------------------------A---CA-------------------TCAATGTCACTTC--CCG--------------------------------------------TATCGATTGAGCC----------------------GCGC--------------CGCTGATGAATATTTG-TTTGCT---CT-TC---CCATTGCAGGCTATACACGCATCGTTTTGGCCCTGATTGCGTTCTGGTTCATGTCCACG
droWil2 scf2_1100000004963:1600282-1600695 - GGCCATTGCTGAGCATGACAATGTTTTTATTTTTGTGCCAAACATAATCGGTGAGTT-ATTGCTCATGT---TTCT-----GCTGTTGCTGCTATAATTCAACTTACTTGCATT--------GTTTTTTATA----AACAAAAATGAT--------------------------------------AATGAATATCACTCACTTAAA------------TATACAT-ACATACACACATAGG---------------------------------------------------------------AAAA-----GCTAATTGAATTAG-----------TCTA---------------ACTGCAACCTGTAAAATGCCA-GGTGCGACCAAGCA--------------------A------CCTTT----------------CCCCCT-TACCGCTA----GCTTTATATATTGATTGCGCCCCCTT----CCTCCA---CC--A-----CCT---TCATT--------------------------------------------------GTATTCTG--T---------TTACCACTCATACTTTTCCGTTGTGCTGTTAATATTATTGTTGTGCT-----TTAT-G--------CT-TT---TCCACACAGGTTACGCCCGGATCGTTTTGGCCCTTATTGCGTTTTGGTTTATGTCGACA
droVir3 scaffold_13042:1634864-1634919 - GGCCATTGCCGAGCACGATAACGTTTTCATTTTTGTGCCAAATCTGATTGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6328:3516386-3516480 - TGTGTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAT--------------------------------------------------TGTTTTGCC-----TTAA-ATTG-T---CT-CT-------TACAGGTTATGCACGCATCGTTTTGGCTATTATTGCGTTTTGGTTTATGTCCACA
droGri2 scaffold_15081:2572421-2572483 - GGCCATTGCCGAGCACGATAACGTTTTCATTTTTGTGCCGAATCTGATTGGTAAATT-T-CGTT-------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGCAATTGCCGAGCACGATAACGTCTTCATCTTTGTGCCAAATCTGATCGGTGAGTG-C-TGTT-------------------------------------------TGTAGTTTTTATTCT-------GCTCTCC------------------------AG----------CT--AGGTAAACAAATCGCATG---TTCGATTTATGCGGCG----------CAATAA---------TAGCGAT-----------------------------------------------------TCT-AGTGTTC-----CCTAATTGGATTAA-----------TAGGGGCTGT---------TTGGCAGCCAGTGCAATGCGG-AGCGC-------AAGTTCAGCGATAAGAG---CCC-CTTCGTC-----C------ACC------C-AATTG-----AGTCA-------------------------------------------------CCC---CCAATGATTCC------------------A---------------TACGTATGATGCACGCAT--A-----------------------------------------------TGTGATGAT-----TTAT-ATTGAT---CT-TT-------TCCAGGCTATGCCCGCATCGTTCTGGCCCTGATCGCCTTCTGGTTCATGTCCACCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................GCATG---TTCGATTTATGCGGCG----------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
.............................................................................................................................................................................................................................................................................................................................AATTGGATTAA-----------TAGGGGC..........................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCTGATCGCCTTCTGGTT..........2111.00101000000000000000
..................TAACGTCTTCATCTTTGTGCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.................................................................................................................................................................G----------CT--AGGTAAACAAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAGCGATAAGAG---CCC-CTTCGTC-----........................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTATGCCCGCATCGTTCTGGCCC..........................2511.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCCGCATCGTTCTGGC............................1911.00110000000000000000
droSec2
GGCAATTGCCGAGCACGATAACGTCTTCATCTTTGTGCCAAATCTGATCGGTGAGTG-C-TGTT-------------------------------------------TGTAGTTTTTATTCT-------GCTCTCC------------------------AG----------CT--AGGTAAACAAATCGCA-G---TCCGATTTATGCGGCG----------CAATAA---------TAGCGAT-----------------------------------------------------TCT-AGTGTTC-----CCTAATTGGATTAA-----------TAGGGGCTGT---------TTGGCAGCCAGTGCAATGCGG-AGCGC-------AAGTTCAGCGATAAGAG---CCC-CTTCGTC-----C------ACC------C-AATTG-----AGTCA-------------------------------------------------CCC---CCAATGATTCC------------------A---------------TACGTATGATGCACGCAT--A-----------------------------------------------TGTGATGAT---CTTTAT-ATTGAT---CT-TT-------TCCAGGCTATGCCCGCATCGTTCTGGCTCTGATCGCCTTCTGGTTCATGTCCACCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...AATTGCCGAGCACGATAACGTCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
............................ATCTTTGTGCCAAATCTGATCGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAGCGATAAGAG---CCC-....................................................................................................................................................................................................................................................................................................................1911.0010001
...........................CATCTTTGTGCCAAATCTGATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
....ATTGCCGAGCACGATAACGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..CAATTGCCGAGCACGATAACGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
dm3
GACAATTGCCGAGCACGATAACGTCTTCATCTTTGTGCCAAATCTGATCGGTGAGTGGC-TGTT-------------------------------------------TGTAGGTTTTATTCC-------GTGCTCC------------------------AG----------CT--AGGTAAACAAATCGCATG---TTCGATTTATGCGGCG----------CAATAA---------TAGCGAT-----------------------------------------------------TCT-AGTGTTC-----CCTAATTGGATTAA-----------TAGGGGCTGT---------TTGGCAGCTAGTGCAATGCGA-AGCGC-------AAGTTCAGCGATAAGAG---CCG-CTTCGTC-----C----A-ACC------C-AATTG-----AGTCA-------------------------------------------------CCT---CCAATGATTCT------------------A---------------TACGTATGATGCACGCAT--A-----------------------------------------------TGTGCTGAT-----TTAT-ATTGAT---CT-TT-------TCCAGGCTACGCCCGCATCGTTCTGGCCCTGATCGCCTTCTGGTTCATGTCCACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCCGCATCGTTCTGGCCCTGATCG....................27113.001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013
...........................................................................................................................................................................................................................................................................................................................................................................................................TTCAGCGATAAGAG---CCG-CTTCGT..............................................................................................................................................................................................................................................................................................................23110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AATTGCCGAGCACGATAACGTCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020401000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................ATCTGATCGGTGAGTGGC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000010000000000000200000000000000000000000000000000000
...AATTGCCGAGCACGATAACGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000020000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTCAGCGATAAGAG---CCG-CTTCG...............................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000
.........................TTCATCTTTGTGCCAAATCTGATCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000
............................ATCTTTGTGCCAAATCTGATCGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CAATTGCCGAGCACGATAACGTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ACAATTGCCGAGCACGATAACGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
................GATAACGTCTTCATCTTTGTGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AGCGAT-----------------------------------------------------TCT-AGTGTTC-----CCTAATTGGATT..............................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGTC-----C----A-ACC------C-AATTG-----AGT.........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GCGC-------AAGTTCAGCGATAA..............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTCTGGCCCTGATCGC...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----TTAT-ATTGAT---CT-TT-------TCCAG..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCTGGCCCTGATCGCCT.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GTGCCAAATCTGATCGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCTGATCGCCTTCTGG............1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................GT---------TTGGCAGCTAGTGCAATGCG..........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGCCTTCTGGTTCATGTCCACC2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AAATCTGATCGGTGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CGAGCACGATAACGTCTTCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCTTCATCTTTGTGCCAAATCTGATCGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTCATCTTTGTGCCAAATCTGATCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAG---CCG-CTTCGTC-----C----A-ACC------........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................GTGCCAAATCTGATCGGTGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GC-------AAGTTCAGCGATAAGAG---........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
....ATTGCCGAGCACGATAACGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....TTGCCGAGCACGATAACGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTCTGGCCCTGATCGCCTTCTG.............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................CGC-------AAGTTCAGCGATAAGAG---C.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..................................GTGCCAAATCTGATCGGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAT-----TTAT-ATTGAT---C..................................................................1911.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AACGTCTTCATCTTTGTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCCCGCATCGTTCTGGCCCTGA.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTACGCCCGCATCGTTCT...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................AGGTAAACAAATCGCATG---TTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GATTAA-----------TAGGGGCTGT---------TTGGG.........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......GCCGAGCACGATAACGTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TTGGATTAA-----------TAGGGGCTGT---------TTGG..........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TAACGTCTTCATCTTTGTGCCAAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCATCGTTCTGGCCCTGA.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AATTGCCGAGCACGATAACGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACC------C-AATTG-----AGTCA-------------------------------------------------CCT---CCA.............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GATAACGTCTTCATCTTTGTGCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTTCTGGCCCTGATCGCCTT................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GACAATTGCCGAGCACGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......................TCTTCATCTTTGTGCCAAATCTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AAATCTGATCGGTGAGTGGC-T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GCCAAATCTGATCGGTGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................TAATTGGATTAA-----------TAGGGT...........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAT-----TTAT-ATTGAT---CT-TT-------TCCAG..................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTTCTGGTTCATGTCC...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...AATTGCCGAGCACGATAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................AA-----------TAGGGGCTGT---------TTGGGG........................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droEre2
GGCAATTGCCGAGCACGATAACGTCTTCATATTTGTGCCAAATCTGATCGGTGAGTA-C-TGTT-------------------------------------------TGGGGTTTTTATTCC-------GCGCTCC------------------------AG----------CT--AGGTAAACAAATCGCATG---TTCGATTTACGCGGCG----------CAATAA---------TAGCGAT-----------------------------------------------------TAT-AGTGTCT-----CCTAATTGGATTAA-----------TAGGAGCTGT---------TTGGCAACCTGTGCAATGCAG-GGCGC-------AAGTTCACCGATAAGAG---CAG-CGTTGTT-----C------ACC------C-AATTG-----AGTAA-------------------------------------------------CCC---CCGATGATTCC----------------GCAGCA-AAAACCATATACAAATATGAGGCACGAAT--C-----------------------------------------------TGCGATGAT-----TTAT-ATTGAT---CT-TT-------TCCAGGCTACGCCCGCATAGTTCTGGCCCTGATCGCCTTCTGGTTCATGTCCACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATAGTTCTGGCCCTGATCGCCTTCTGGTT..........32119.001900000019
....................ACGTCTTCATATTTGTGCCAAATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGCCTTCTGGTTCATGTC....2111.0010000010
......................GTCTTCATATTTGTGCCAAATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
..CAATTGCCGAGCACGATAACGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
................GATAACGTCTTCATATTTGTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
droYak3
GGCAATTGCCGAACACGATAACGTCTTCATCTTTGTGCCAAATCTGATCGGTGAGTG-C-TGTT-------------------------------------------TTTGGTTTTTATTCC-------GTGTTCC------------------------AG----------CT--AGGTAAACAAATCGCATG---TTCGATTTATGCGGCG----------CAATAA---------TAGCGAT-----------------------------------------------------TCT-AGTGTTT-----CCTAATTGGATTAA-----------TAGGCGCTGT---------TTGGCAACCTGTGAAATGCAG-GGCGC-------AAGTTCACCGATAAGAG---CAG-CGCCGTC-----C------ACC------C-AATTG-----AGTCA-------------------------------------------------CCC---CCAATGATTTC----------------GCCCCAGAAAACCATATACATATATGATGCACGCAT--A-----------------------------------------------TGTGTTGAT-----TCAT-ATTGAT---CT-TT-------TCCAGGCTATGCCCGCATCGTTCTGGCCCTGATCGCCTTCTGGTTCATGTCCACCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..CAATTGCCGAACACGATAACGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..............................CTTTGTGCCAAATCTGATCGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..........GAACACGATAACGTCTTCATCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
................GATAACGTCTTCATCTTTGTGCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATCGTTCTGGCCCTGATCGCC..................2411.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................GT---------TTGGCAACCTGTG.................................................................................................................................................................................................................................................................................................................................................................1540.50200000000002
droEug1
GGCAATCGCCGAGCACGATAACGTTTTCATCTTCGTACCAAATTTGATCGGTGAGTC-T-TGTT-------------------------------------------T------TCTA-TAC-------GCGTTCC------------------------AGTGGGCTGAGGTA--AGGTAAACAAATCGCATG---TTCGATTTATGCGGCG----------CAGTTA---------TAGCGTT-----------------------------------------------------TCG-GGTGTTC-----TCTAATTGGATTAT-----------TGAGTGCTGC---------TTGGCAACCTGTGAAATGCAA-GGCG----------GTTCAACGATAAGTG---AAG-T---GTC-----C------ACC------C-CACTG-----AGTCA-------------------------------------------------CACAATCCGATGTTTCCCC--CCA--A--------A---------------TATATTTGAAGTATATAT--A---------TCGC------------------------------------CGCTCA-------TAT-CTTGAT---AT-TT-------TCCAGGCTATGCCCGCATCGTTCTGGCTTTGATCGCGTTCTGGTTTATGTCCACCSizeHit CountTotal NormTotal
No Reads
droBia1
GGCAATTGCCGAGCACGACAACGTCTTCATCTTTGTGCCAAACTTGATCGGTGAGTG-T-GGTG-------------------------------------------C----------------TTT-G------------------------------------------ATA--AGGTAAACAAATCGCGCG---ATCGATTTGTGCGGCG----------CAGTTA-------------------------------------------------------------------------GGTGTTCCACTGGCTAATTGGATTTG-----GGCTTCTGGGGGATGTT--------TTGGCAACCTGTGAAATGCAG-GGCGC-------AAGTTCACCGACAGCGGAAGCCG------CC-----G------CCC------C-CATTG-----AGTCA------TT------------CCCCGC----C---CACCACC--------------GCAAT-----TCCCC--TTGGCTCTGGGATTCA------------------GGAA----GCAGATG-------------------------------------------------GACTGA-------TAC-ACTGACTCTAT-TT-------TCCAGGCTATGCCCGCATCATCCTGGCCCTGATCGCGTTCTGGTTCATGTCCACCSizeHit CountTotal NormTotal
No Reads
droTak1
GGCAATTGCCGAGCACGACAACGTCTTCATCTTTGTGCCAAATTTAATTGGTGAGTG-T-TGTG-------------------------------------------T----------------TTT-G-------------------------------GG----------CA--AGGTAAACAAATCGCACG---ATCGATTTATGCGGCG----------CAGTTA-------------------------------------------------------------------------GGTGTTC-----CCTAATTGGATTTG-----CATTTATGGGGGATGTT--------TTGGCAACCTGTGAAATGCAG-GGGGC-------AAGTTCACCGATAAGAAAAGCCG------CCTTTGCCTCC---CCCCCCCCCC-CATTG-----AGTCT-------T------------CCCCC-CTTA-----------CAA----AC-----------------CCC--TTAG---------------------ATAC-----TGAA----ACATATGG-----ACTTCGT------------------------------------CACTCA-------TTT-ATTGAC---CT-TT-------TCCAGGCTACGCCCGCATTGTTTTGGCCCTGATCGCCTTCTGGTTCATGTCCACCSizeHit CountTotal NormTotal
No Reads
droEle1
GGCCATTGCCGAGCATGACAACGTCTTCATTTTTGTGCCAAATTTGATTGGTGAGTTGT-TGTG----TTGTTGTT-----GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT--------GTTTTTGAAGATCC------------------------AG----------ATTGGGGTAAACAAATCGCATG---TTCGATTTATGCGGCG----------CAGTTC---------AAGTGTT-----------------------------------------------------TTGGGGTGTTC-----CCTAATTGGATTTA-----------TAGGGGATGT---------TTGGCAACCTGTGCAATGCAG-GGCGC-------AAGTTCATCACCCACC---------------------------ACCCACCACCCAC-TG-----CCCCA--------------------------CTGC-----------CAATGTCAC-------------CCC----------------GAC---------------CCAGTCCGCGGCATAC------------------------------------------------------TAATGA-------CAT-ATTGAC---ATTTT-------TCCAGGCTATGCCCGCATTATTCTGGCCCTGATCGCGTTCTGGTTCATGTCCACCSizeHit CountTotal NormTotal
No Reads
droRho1
GGCTATTGCCGAGCATGACAACGTCTTTATCTTCGTGCCAAATTTGATTGGTGAGTT-G-----------------------------------------------------TT--------GTTTTTTAAGATCC------------------------TG----------TG--GGGTAAACAAATCGTATG---ATCGATTTATGCGGCG----------CAGTTA---------TAGCGCT-----------------------------------------------------T-G-GGTGTTC-----CCTAATTGGATTAA-----------TAGGGGATGT----------TGGCAACCTGTGAAATGCAG-GGCGC-------AAGTTCACCGATATGTG---GCG-C---ACC-----C------ACC------C-ACC-----------------------------------------------A---T-GAATGCCACC----CCGATATTTCCCC--GCA--------------------------------------------TATTGATATGTATTCGC------------------------------------CACTGA-------TAT-ATTGAC---TT-TT-------TCCAGGCTATGCCCGCATCATTCTGGCCCTGATCGCGTTCTGGTTCATGTCCACCSizeHit CountTotal NormTotal
No Reads
droFic1
GGCAATTGCCGAGCACGACAACGTCTTTATCTTTGTGCCAAATTTGATCGGTGAGTG-A-CGTT--------------------------------------GTTATTGTTGTT--------GTTTTTCAAGTTCC------------------------AT----------AG--GGGTAAACAAATCGCATG---TTCGATTTATGCGGCG----------CAGTTA---------TTGCGTT-----------------------------------------------------CTG-TGTGTTCC----CCTAATTGGATTTA------------AGGGGATGTTCG-GG---TTGGCAACCTGTGAAATGCAG-GGCGC-------AAGTTCACCGATATAGAGAGCCA------CC-----G-AACC-ACC-----------------------------------------------------C---CC-------------------TCGATGTCTTC-CAC--CTAG---------------------ATATTGATATGGGGAATACAT--A-----------------------------------------------T--ATTGA-------CAT-ATTGAC---TT-TT-------TCCAGGCTATGCCCGCATCGTTTTGGCATTGATCGCCTTCTGGTTCATGTCCACCSizeHit CountTotal NormTotal
No Reads
droKik1
GGCCATAGCCGAGCATGACAACGTTTTCATTTTTGTGCCAAATTTGATCGGTGAGTT-G-TTTT-------------------------------------------TGTTGTAT-------GTTTTTGTCG----------------------------AATAGATTTCGGAG--GGGTAAACAAATCGAATAT--GTTGATTTATGGGCCACAAACCCACACAA-ACATACACACTTTGCCAT-----------------------------------------------------T--------TG-----TATAATTGGATTAG-----------TTGGG--TGTGCGGCGTTCCTGACAACCTGGAAG--CCCC-AGTCA-------AAGTCAAGGGGCAAGCG---ACACCCCGGCA-----A--------GAAACCCCCCT-TGCCCCTT----CTTCTGTT------------CCTCCT----C---CTCCTCC------------------------TCCTC--TTGG---------------------TTAT---------------------------------------------------------------------CGATGT------TTATAATTGAT---TT-TT---TTCCCACAGGCTATGCCCGCATCGTTTTGGCCTTGATCGCCTTCTGGTTCATGTCCACCSizeHit CountTotal NormTotal
No Reads
droAna3
GGCAATTGCCGAGCATGACAACGTCTTTATCTTTGTGCCCAATTTAATTGGTGAGTA-T-TTTGCGTGT---TTTTGT---GTTTTTTCTGCTA-------------TATTATT--------GTTTT-T------------------------------------------ATC--ACGTAAACAAATCGAATATGGTGCCGTTTATGAAACA----------CAC-AATAG------AAGCTA------------------------------------------------------------TGTGG-----GCTAATTGGATTAG-----------C-GGCGA-------------TGGCAACCTGTGAAATGCGAAGGTGCAACGTAGAAGTTCAGGGGCACGGC---AC-------------------CTTGC------C-AC-----------CTTGTTC-------------------------C---CT-------------------TCAATGTCAGC-C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............GCATGACAACGTCTTTATCTTTGTGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
...AATTGCCGAGCATGACAACGTCTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
droBip1
GGCAATTGCCGAGCATGACAACGTATTTATCTTTGTGCCCAATCTGATTGGTGAGTG-ATATAGTGTGT---TTTTGTAATGTTTTCGTTGTTC-------------TATTGTT--------GTGTT-T------------------------------------------ATC--ACGTAAACAAATCGAATATGTTGCCGTTTATGAAACA----------TAG------------TAGTGAT-----------------------------------------------------CT-------GG-----GCTAATTGGATTAG-----------CAGC-GATGG----CG---ATGGCAACCTGTGAAATGCGAAGGTGCAACGCAGAAGTTCAGGGGCACAAC---AC-------------------CTT----------------------------------------------------------------------------------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GCCACCSizeHit CountTotal NormTotal
No Reads
dp5
GGCCATTGTCGAGCATGACAACGTCTTCATATTTGTGCCAAATTTGATTGGTAAGTT-T-TGGC-------------------------------------------G----------------------------GAGCGAATCGGTCGAGTCCCCCTC--TGGACTTTTGGA--ATGTATACATACC-----------------------------------------TGAACCCGTGTG-ATTGTTCCGGCTGATGGTGCTGGCGCTGGCTGTTGCGGGGAGGGGGCGGGTGCGC----CGTGGGG-----CCTAATTTAATTAGCTGTGTGCTT--GTGCGTTGT---------CATGCAACCTGTAAAATGCAC-ACTGG-------CAGTGCATGGACCAGCC---CCAGCCCAGCC-----C------AGG------C-CA--G-----AGTCGGCCTC-------------------------A---CA-------------------TCAATGTCACTTC--CCG--------------------------------------------TATCGATTGAGAT----------------------GCGA--------------CGCTGATGAATGTTTG-TTTGCT---CT-TCTCCCCGTTGCAGGCTATACACGCATCGTTTTGGCCCTGATTGCGTTCTGGTTCATGTCCACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTC--CCG--------------------------------------------TATCGATTGAGAT----------------------G..............................................................................................................2112.0020200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTTTTGGCCCTGATTGCGTC................2411.0010010000000
.GCCATTGTCGAGCATGACAACGTCTTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................CCTGTAAAATGCAC-ACTGG-------............................................................................................................................................................................................................................................................................................................................................1911.0010100000000
......................................................................................................................................................................................................................................................................................CGGGGAGGGGGCGGGTGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTTTTGGCCCTGATTGC...................2111.0010100000000
.........CGAGCATGACAACGTCTTCATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGATTGAGAT----------------------GCGA--------------CGCTGAT......................................................................................2411.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACGCATCGTTTTGGCCCTGAT......................2411.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCATCGTTTTGGCCCTGA.......................2111.0010100000000
.........................................ATTTGATTGGTAAGTT-T-TGGC-------------------------------------------G----------------------------GAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000001
..........GAGCATGACAACGTCTTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAT----------------------GCGA--------------CGCTGATGA....................................................................................2111.0010100000000
.........CGAGCATGACAACGTCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................................................................................................................GGCGGGTGCGC----CGTGGGG-----TT........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................GA--ATGTATACATACC-----------------------------------------TGAACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................TGTGTGCTT--GTGCGTTGT---------CA............................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCCTGATTGCGTTCTGG............2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTATACACGCATCGTTTTGGCCCT.........................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................GTGCTT--GTGCGTTGT---------CATG..........................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGGTTCATGTCCACG1911.0010100000000
droPer2
GGCCATTGTCGAGCACGACAACGTCTTCATATTTGTGCCAAATTTGATTGGTAAGTT-T-TGGC-------------------------------------------G----------------------------GAGCGAATCGGTCGAGTCC-----------------------------------GCCT---CTGGACTTACGGAATG------TATACAT-ACCTGAACCCGTGTG-ATTGTTCCTGCTGATG------------GCTGTTGAGG----GGGGCGGGTGCGT----CATGGGG-----CCTAATTTAATTAGCCGTGTGCTT--GTGCGTTGT---------CATGCAACCTGTAAAATGCAC-ACTGC-------CAGTGCATGGACCAGCC---CCAGCGCAGCC-----C------AGC------C-CA--G-----AGTCGGCCTC-------------------------A---CA-------------------TCAATGTCACTTC--CCG--------------------------------------------TATCGATTGAGCC----------------------GCGC--------------CGCTGATGAATATTTG-TTTGCT---CT-TC---CCATTGCAGGCTATACACGCATCGTTTTGGCCCTGATTGCGTTCTGGTTCATGTCCACGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATACACGCATCGTTTTGGCC...........................2312.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGCATCGTTTTGGCCCTG........................2112.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACGCATCGTTTTGGC............................1912.002200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACGCATCGTTTTGGCCCT.........................2411.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCCTGATTGCGTTCTGGTT..........2411.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATCGTTTTGGCCCT.........................1811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACGCATCGTTTTGGCC...........................2011.001100000
..............................................................................................................................................ATCGGTCGAGTCC-----------------------------------GCCT---CTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGCCCTGATTGCGTT................2011.001000001
droWil2
GGCCATTGCTGAGCATGACAATGTTTTTATTTTTGTGCCAAACATAATCGGTGAGTT-ATTGCTCATGT---TTCT-----GCTGTTGCTGCTATAATTCAACTTACTTGCATT--------GTTTTTTATA----AACAAAAATGAT--------------------------------------AATGAATATCACTCACTTAAA------------TATACAT-ACATACACACATAGG---------------------------------------------------------------AAAA-----GCTAATTGAATTAG-----------TCTA---------------ACTGCAACCTGTAAAATGCCA-GGTGCGACCAAGCA--------------------A------CCTTT----------------CCCCCT-TACCGCTA----GCTTTATATATTGATTGCGCCCCCTT----CCTCCA---CC--A-----CCT---TCATT--------------------------------------------------GTATTCTG--T---------TTACCACTCATACTTTTCCGTTGTGCTGTTAATATTATTGTTGTGCT-----TTAT-G--------CT-TT---TCCACACAGGTTACGCCCGGATCGTTTTGGCCCTTATTGCGTTTTGGTTTATGTCGACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..CCATTGCTGAGCATGACAATGTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
......TGCTGAGCATGACAATGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................GCA--------------------A------CCTTT----------------CCCCCT-TACCGC.............................................................................................................................................................................................................................................................................2111.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGCCCTTATTGCGT.................1911.00100010
....ATTGCTGAGCATGACAATGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGCGTTTTGGTTTATGT.....2011.00100100
droVir3
GGCCATTGCCGAGCACGATAACGTTTTCATTTTTGTGCCAAATCTGATTGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................ATTTTTGTGCCAAATCTGATTGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000100000000000000000000000000000000000000000
................................TTGTGCCAAATCTGATTGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
......TGCCGAGCACGATAACGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000100000000000000000000000000000000000000000000000000000000
droMoj3
TGTGTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAT--------------------------------------------------TGTTTTGCC-----TTAA-ATTG-T---CT-CT-------TACAGGTTATGCACGCATCGTTTTGGCTATTATTGCGTTTTGGTTTATGTCCACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGCATCGTTTTGGCTATT........................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACGCATCGTTTT...............................2011.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGCGTTTTGGTTTATGTCC...2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCC-----TTAA-ATTG-T---CT-CT-------TACA...................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCACGCATCGTTTTGG.............................2111.001100000
droGri2
GGCCATTGCCGAGCACGATAACGTTTTCATTTTTGTGCCGAATCTGATTGGTAAATT-T-CGTT-------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:46 PM