ID:

dsi_19405

 Coordinate:

2r:4783798-4783925 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-25.6 -25.5 -25.5

Flybase annnotation

exon [2r_4783693_4783797_+]; CDS [2r_4783693_4783797_+]; CDS [2r_4783926_4784026_+]; exon [2r_4783926_4784026_+]; intron [2r_4783798_4783925_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------##################################################
GCCAAGCTAAAGGATGCGACCACGGCCAGTAGCGCCGCTCACTACGACAGGTAAGAGCGAAACCCCCGCTCTGCATGCCCCGCTTTTTCCAATATTCCGACTAACCCAACCCCCTGGTCATGTCCCACTTAGAGGCGGATGCCTGTAGCACTTAATGTTGATCTTATTGACCTTTCAGTGTCTCGACCAGCAGCGGAGTGAGCAGCAACAGCGGAAGCACAGGCAATG
**************************************************(((((((((.......))).(((((.((.((((((((...........(((((...........)))))...........))))))))..)).))))).............))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O002
Head
.CCAAGCTAAAGGATGCGAC................................................................................................................................................................................................................ 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0
................................................................................................................................................................................................GCGGAGTGAGCAGCAACAGC................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GTCTAGACCCGAAGCGGAGTG............................ 21 3 2 1.50 3 0 0 0 0 3 0 0 0 0
....................................................................................................................................................................................TCTGGACCCGAAGCGGAGTGA........................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGCGGAAGCACAGGCA... 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................AGCAGCGGAGTGAGCAGCAATGGA................ 24 3 1 1.00 1 0 0 0 0 0 1 0 0 0
................................CGCCGCTCATTACGACAG.................................................................................................................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................ACCAGCAGCGGAGTGAGCAGCAAC................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................CAGCGGAGTGAGCAGCAAC................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................ACTTAATGTTGATCTTATTGACCT....................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................TGCCTGTAGCACTTAATGTTGATCTT............................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ACAGTGTCTCGACCAGCAGCGGAG.............................. 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................................................................TAACCCAACCGCGTGGTC............................................................................................................. 18 2 2 0.50 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................GACCCGAAGCGGAGTGA........................... 17 2 9 0.22 2 1 0 0 0 1 0 0 0 0
......................CGGCCTGTAGCGCAGCT............................................................................................................................................................................................. 17 2 9 0.11 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................ACCCGCAGCGGCGTGAG.......................... 17 2 9 0.11 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................CCCTGTAGGACTTAATGCT..................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0
................................................................................................................................TTAGCGGCGGATGCGTG................................................................................... 17 2 18 0.06 1 1 0 0 0 0 0 0 0 0
......................CGGCCTGTAGCGCAGC.............................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0
....................AACGGCCGGTAGAGCCGC.............................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GCATCAGCGGAAGCA......... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CGGTTCGATTTCCTACGCTGGTGCCGGTCATCGCGGCGAGTGATGCTGTCCATTCTCGCTTTGGGGGCGAGACGTACGGGGCGAAAAAGGTTATAAGGCTGATTGGGTTGGGGGACCAGTACAGGGTGAATCTCCGCCTACGGACATCGTGAATTACAACTAGAATAACTGGAAAGTCACAGAGCTGGTCGTCGCCTCACTCGTCGTTGTCGCCTTCGTGTCCGTTAC
**************************************************(((((((((.......))).(((((.((.((((((((...........(((((...........)))))...........))))))))..)).))))).............))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
.........................................................................................................................................................................TGGAAAGTCACAGAGCTGGT....................................... 20 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................................CGGAAAGTCACAGAGCTGGT....................................... 20 1 1 1.00 1 1 0 0 0
....................................................................................................................................................................................AGAGCTGGTCGTTGCC................................ 16 1 2 0.50 1 0 1 0 0
..........................................................................................................................................................................................................GTCGTTGTCACCTTCGGGTC...... 20 2 2 0.50 1 0 0 1 0
...................................................................................................................................................................................CAGAGCTGGTCGTTG.................................. 15 1 10 0.30 3 0 3 0 0
..................................................................................................................................................................................GCAGAGCTGGTCGTTGCC................................ 18 2 4 0.25 1 0 1 0 0
....................................................................................................................................................................................AGAGCTGGTCGTTGC................................. 15 1 6 0.17 1 0 1 0 0
...................................................................................AAAAAGGTTATAAGGTT................................................................................................................................ 17 1 6 0.17 1 0 0 0 1
.......................................................................................AGGTTATAAGGGTGA.............................................................................................................................. 15 1 12 0.08 1 0 0 0 1
...................................................................................................................................................................................CAGAGCTGGTCGTTGCCAT.............................. 19 3 14 0.07 1 0 1 0 0
....................................................................................AAAAGGTTATCGGGCGGAT............................................................................................................................. 19 3 16 0.06 1 0 0 0 1
........................................................................................................................................................................................CTGGTCGACGCCTCA............................. 15 1 17 0.06 1 0 1 0 0
......................................CGTGCTGCTGTCCATT.............................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1
....................................................................................................................................................................................AGAGCTGGTCGTTGCCA............................... 17 2 20 0.05 1 0 1 0 0

Generated: 04/23/2015 at 03:51 AM