dsi_19398

five_prime_UTR [2r_10810384_10811212_+]; exon [2r_10810384_10811212_+]; intron [2r_10811213_10817834_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAGCAGCGACAGCAGCGACACCCCGACAACGAGACATCGGCAACATATAGGTAAGCCAACTGCCAAGAACCCAAAGTTCTCACTCTCCACCAAAGTTGGCTCAAAACGGGTTTTGGCCAAAAAAAACAGACACACAAGACCACGACGAAAAACGTTGAAACGCAACACAAAACTCAACGCAGCAGGAGCGACATGCGGCAAAAGTGCGCGCGGTGGTTTGAAAAATTAACCATGTTCCCACTTGGCTGTG ************************************************...((((((((....(((((.....))))).............)))))))).......(((((((...................))))))).(((((.....)))))....................((((((....))....))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M023 head	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
........................GACAACGAGACATCGGCAAC..............................................................................................................................................................................................................	20	0	1	2.00	2	2	0	0	0
..................................................GTATGCCAACTCCAAAGAACCC..................................................................................................................................................................................	22	3	1	1.00	1	0	1	0	0
..........................CAACGAGACGTCGGCAACATATAGAAAA....................................................................................................................................................................................................	28	3	1	1.00	1	1	0	0	0
............................................................................................AGGTTGGCTCAAGACGG.............................................................................................................................................	17	2	5	0.20	1	0	0	1	0
.........................................................................................................TCGTGTTTTGGCTAAAAAAAA............................................................................................................................	21	3	20	0.05	1	0	0	0	1
.................................................................................................................................................................................................................................TTAACCAGATTCCCACT........	17	2	20	0.05	1	0	0	1	0

GTCGTCGCTGTCGTCGCTGTGGGGCTGTTGCTCTGTAGCCGTTGTATATCCATTCGGTTGACGGTTCTTGGGTTTCAAGAGTGAGAGGTGGTTTCAACCGAGTTTTGCCCAAAACCGGTTTTTTTTGTCTGTGTGTTCTGGTGCTGCTTTTTGCAACTTTGCGTTGTGTTTTGAGTTGCGTCGTCCTCGCTGTACGCCGTTTTCACGCGCGCCACCAAACTTTTTAATTGGTACAAGGGTGAACCGACAC ************************************************...((((((((....(((((.....))))).............)))))))).......(((((((...................))))))).(((((.....)))))....................((((((....))....))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	M053 female body	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries
........................................................................................................................................TCTGGTGCTGCTTTTTGCAA..............................................................................................	20	0	1	2.00	2	1	1	0	0	0	0	0	0
........................................................................................................................................CCTGGTGCTGCTTTTTGCAA..............................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0
................CTGTGGGGCTGTCTCTC.........................................................................................................................................................................................................................	17	2	10	0.60	6	0	0	0	5	0	1	0	0
..........................................................TGAGGGGTCTTGGGTTTC..............................................................................................................................................................................	18	2	11	0.36	4	0	0	0	0	4	0	0	0
...........CGTCGCTGTGGGGAT................................................................................................................................................................................................................................	15	1	3	0.33	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................TGGAACAAGGGTGAA.......	15	1	5	0.20	1	0	0	0	0	0	1	0	0
...........................................................................CAAGGGGGAGAGGTGGTTTA...........................................................................................................................................................	20	3	12	0.08	1	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................TAGTTGGTACAAGTGTG.........	17	2	13	0.08	1	0	0	0	0	0	0	0	1
................................................................................GTGAGAAGTGGTATCAA.........................................................................................................................................................	17	2	16	0.06	1	0	0	1	0	0	0	0	0
...........................................................GAGGGGTCTTGGGTTTAAA............................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0	0	0
....................................................................................................................................................................................TTGTCCTCGCTGTACCC.....................................................	17	2	20	0.05	1	0	0	0	0	0	1	0	0
..........................................................TGAGGGGTCTTGGGTTT...............................................................................................................................................................................	17	2	20	0.05	1	0	0	1	0	0	0	0	0
...........................................................GAGGGGTCTTGGGTTTC..............................................................................................................................................................................	17	2	20	0.05	1	0	0	1	0	0	0	0	0
..................................................................................................CGAGATTTGCCCAGAA........................................................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:10811163-10811412 +	dsi_19398	CA-GCAGCGACAGCA-------GC----------------GACA-----------C----------CCCGACAACGA--------GA------CATCGGC-------------------------AAC--------ATA-TA--GGTAAG---CCAACTGCCA-AGAACCC--AAAGTTCTC------ACTCTCCAC----C--AAAGTTGGCTCAA-AACGGGTTT------TGGCCAAAAAA-----AACAGACACACAAGACCA------------CG------ACGAA------------A--------AACGTTGAAACGCAAC--------------------ACAAAACT---------------CAACGCAGCAG-------------------------------GAGCGACATGCGGCAAAAGTGC---------------------------------------------------------------------GC-GCGGTG-GTTTG-AA----AAATTAACCATGTTCCCACTTGGCTGT-G-------------------------------
droSec2	scaffold_1:7615853-7616102 +		CA-GCAGCGACACC--------GC----------------GACA-----------C----------CCCGACATCGA--------GA------CATCGGC-------------------------AAC--------ATA-TA--GGTAAG---CCAACTGCCA-AGAACCC--AAAGTTCTC------ACTCTCCAC----C--AAAGTTGGCTCAA-AACGGGTTT------TGGCCAAAAAAA----AAAACACACACAAGACCA------------CG------ACGAA------------A--------AACGTTGAAACGCAAC--------------------ACACAACT---------------CAACGCAGCAG-------------------------------GAGCAACATGCGGCAAAAGTGC---------------------------------------------------------------------GC-GCGGTG-GTTTG-AA----AAATTAACCATGTTCCCACTTGGCTGT-G-------------------------------
dm3	chr2R:10108236-10108473 +		CG-ACACCC-CAACA-------TC----------------GA-------------------------------------------GA------CATCGGC-------------------------AAC--------ATA-TA--GGTAAG---CCAACTGCCA-AGAACCC--AAAGTTCTC------ACTCTCCAC----C--GAAGTTGGCTCAAAAACGGGTTT------TGGCCAAAAAAAAAAAAAAAAACACACAAGA------------------------CGAA------------A--------AACGTTGAAACGCAAC--------------------GCA--ACT---------------CAACGCAGCAG----------------------CAGCAGCAGCAGCGACATGCGGCAAAAGTGC---------------------------------------------------------------------GC-GCGGTG-GTTCG-AA----AAATTAACCATGTTCCCACCAAAC------------------------------------
droEre2	scaffold_4845:15735140-15735375 -		ACAGCAGCGACACC--------GC----------------GACA-----------C------------------CGACACC----GA------CATAGG----------------------------CATATAGA--CA-TA--GGTAAGCAGCCAACTGCCA-AGAACCC--AAAGTTCTC------GCTCTCCAC----TG-AAACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------ACACACGACCA------------CG------ACGA-------------A--------AACGATGAAACGCAA---------------------------CT---------------CAACGCAGC----------------------------------AGCGACATGCGGCAAAAGTGC---------------------------------------------------------------------GC-GCGGTG-GTTTG-AG----AAATTAACCATGTTCCCACTTGGTTGTTG-------------------------------
droYak3	2R:10045037-10045310 +		CA-GCAGCAACATTGAACATCAGC--------GACACC--GCCA-----------C----------CGCGACACCGACACC----GA------CA-------------------------------GCATATAGA--CG-TA--GGTAAGCGGCCAACTGCCA-AGAACCC--AAAGTTCTC------ACTCTCCAC----TGAAAACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------ACACACGACCA------------CG------AC---C----ACGACGAATACGACG-AACGATGAAACGCAA---------------------------CT---------------CAACGCAGC----------------------------------AGCGACATGCGGCAAAAGTGC---------------------------------------------------------------------GC-GCGGTG-GTTTG-AAAAAAAAATTAACCGTGTTCCCACTTGGTTGTT---------------------------G--TG
droEug1	scf7180000409462:2736374-2736625 -		CA-ACATCTT------------TC--------GACAACGCGACA-----------C------------------CGACACC----GA------CA-------------------------------ACATATAAATATA-TA--GGTAAG---CCAACTCCCA--GAACCC--AAAGTTCTC------ACTC--C----TCT--AAACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------AC--ACGACCA------------CG------ACCA------ACGACCAA--CGACC--ACGATGAAACGCAAC--------------------ACA--ACG---------------CAACGAA----AAGCAAC-----------------------GCAGCGACATGCGGCAAAAGTGC---------------------------------------------------------------------TTGGCGGCG-GGTTGAAA----AAATTAACCATGTTACCACTTGGTTGT---------------------------------
droBia1	scf7180000301506:3157398-3157604 -		CG-CCAGCAAC-----------GC----------------GACA-----------------------------------------------------------------------------------CATCCAGA--AA-TT--GGTAAGCCAACAACTGCCA--GAGCCC--AAAGTTCTC------ACTCCCCTCCGTCT--TGACTGGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------AC--ACGGCCAA-----------CG------A---A--------------------------TGAAACAAAA---------------------------CG---------------CAACGCAAC--------------------------------GCAGCGACATGCGGCAAAACTTC---------------------------------------------------------------------GA-GCGGCGGGTTTG-AA----AAATTAACCATGTTCCCACTTTAC------------------------------------
droTak1	scf7180000414111:10276-10476 +		CA-ACATCGACAAC--------GC----------------GACA-----------C----------CGCGACACCGACACG----GC------CA-------------------------------ACATTTAGATATA-TA--GGTAAG---CCAACTCCCAAAGAACCC--AAAGTTCTC------ACTC--C----TCT--TGACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------AC--ACTACCA------------CG------A---AAGC-------------------------AAACGCAAC--------------------GCA---------------------AACGCA----GCGCAAC----------------------------------------------------------------------------------------------------------------------GCAGCGGGTTTGGAA----AAATTAACCATGTTCCC-------------------------------------------
droEle1	scf7180000491349:767683-767952 -		CA-ACATCGACAACA-------TC----------------GACA-----------A----------CGCGACACCAAAATC----GA------CA------A----CATAA----------------CATATAG----A-TA--GGTAAG---CCAACTCCCA--GAACCTGGAGAGTTCTCCCCCCATCTCTTC----TCT--TAACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------AG--ACGACCA------------CG------A---AC-C---------A--------AACGACGAAACGCAA-----------------------------------------------C-------------------------------------GCAGCGACATGCGGCAAAACTGCGA-------------------------------------------------------------------GC-GGGGCG-GCTTG-AA----AAATTATCCATGTTCCCACTTAAATGGTGGCCCAAACGACAGGCAGGCAGGCAGGCAGGG
droRho1	scf7180000777200:424330-424574 +		CA-ACG-CGACA----------GC----------------GACA-----------C----CGAAA--CCGACACCGACA----------TCGACAACGACAA----CATAA----------------CATATAG----A-TA--GGTAAG---CCAACTCCCA--GAACCTGGAGAGTTCTC------CC--TCC----TCT--TAACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------AC--ACGACCA------------CG------A---AA-CAAACGACCAA-ACGACCAAACGGCCAAACGCAA-----------------------------------------------C-------------------------------------GCAGCGACATGCGGCAAAACTGC---------------------------------------------------------------------GA-GCGGCG-GGTTG-AA----AAATTATCCATGTTCCCACTTGG-------------------------------------
droFic1	scf7180000453948:324778-324967 -		CA-GCAACAGCAACA-------GC----------------GACA-----------C------------------CGAAACC----CA--------------------------------------AAC--------ATA-TA--GGTAAG---CCAACTCCCA--GAACCT--GGAGTTCCC------ACTC--C----TCT--TGGCCTGGCTGAAAAACGGGTTT------TGGCCAAAAAC------------AC--ACGACCAA-----------CG------AC-----------------------------------------------------------------------------------CAAC-------------------------------------GCAGCGACATGCGGCAAAACTGC---------------------------------------------------------------------GC-GCGGCG-GGCTG-AA----AAATTAACCATGTTCCCACTTGA-------------------------------------
droKik1	scf7180000302517:687991-688203 -		CG-GCAGCAGCAGCA-------GC----------------AACA-----------C------------CAACGGCA---------GG------CA-------GCAACTTGGCAATTGATTTGGCCAAC--------ATA-CG--GG----CTGCTGATTGCCA-GCAAC-----------------------------------TGACTTGGTTT---------CTT------TGACTAATGAC------------ACAAACGACAA------------CA------GC---A----GCAAC-------------------------------------------------------AGCAACAATGAGTGC----------------------------------------------------------------AACAGCAGCAGCAGC-ACC---AGCAACATGT---------------------TGCAGACACGC-----GC-GCATC--GTTAG-CA----AAATGAACCAACTTC---------------------------------------------
droAna3	scaffold_13266:5816234-5816429 -		GA-CTCGAGAGGATA-------GA----------------GACCCTGCTG------------------------CA----------A------CATCG--------CATAA----------------G--------TTA-GA--GGTAAGAAGGCAACTCCCA--GAACCG--C--GCCCGC------ACTCTCA---TTCT--GGACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------TCCCAAGACAAGACTCGACTCTACACTCCACA-----------------------------------C-------------------------TCCATACT---------------CCACGCAACAC-------------------------------G---GAC---------------------------------------------------------------------GC------AC-------------------------------AGGCCATGTTACCAC-----------------------------------------
droBip1	scf7180000396372:431264-431465 -		CG-AGAGACGAGACT-------CGAGAGGATAGA------GACCCTGCTG------------------------CA----------A------CATCG-----------------------------CATAAAG--TTA-GA--GGTAAG---GCAACTCCCA--GAACCG--CG--CCCGC------ACGCTCA---TTCT--GGACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAG------------AG--CCGACTC----------CACACTCCACACTTC------------A----------------TAC-------------------------TCCATACT---------------CCACGCAACAC-------------------------------GGACGAC---------------------------------------------------------------------GC------AC-------------------------------AGGCCATGTTACCAC-----------------------------------------
dp5	3:17358322-17358496 +		TC-ACAGACAAACCA-------CT----------------GAT------GCAGCGCGAACCGAACC---------A-----AACG-----------------CCCATCTGGCCGCGTTCTTGGCCCTC--------TCAC-T--AG----G---------------------------------------CCCTCGC----C--TGGCCTGGCTCAA-AACGGGTTTGGTTTGTGGCCAAAAAC-------ACAGCACACA--------------------------------------------------------------------------------------------------------------------------GCGTGAGGCAGAACTCCAGTAGAGTCACC-----------------------------------------------------------------------------------AGTAG-AGTT-----C-------------------------------------------G---------------------------G--CT
droPer2	scaffold_31:433889-434063 -		TC-ACAGACAAACCA-------CT----------------GAT------GCAGCGCGAACCGAACC---------A-----AACG-----------------CCCATCTGGCCGCGTTCTTGGCCCTC--------TCAC-T--AG----G---------------------------------------CCCTCGC----C--TGGCCTGGCTCAA-AACGGGTTTGGTTTGTGGCCAAAAAC-------ACAGCACACA--------------------------------------------------------------------------------------------------------------------------GCGTGAGGCAGAACTCCAGTAGAGTCACC-----------------------------------------------------------------------------------AGTAG-AGTT-----C-------------------------------------------G---------------------------G--CT
droWil2	scf2_1100000004921:2442550-2442669 -		CA-GCAACAACAACA-------GC----------------AACA-----------A------------CAACAACA----------A------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---A----GCAGC-------------------------------------------------------AGCAACAACAAGCTA----------------------------------------------------------------AGCATCAGCAACAGCTTAC---AG---------------------------------------------CC-GCCCTA-ATCCA-AC----AACAAAATCGAGTTCTTGCCCAGCAAA-G------------------------------C
droVir3	scaffold_12855:7978358-7978544 +		CA-GCAGCAGCAGCA-------GC----------------GGCA-----------G------------------------------G------CA----------------------------------------------GCG----TA---TCAGCAG----------C--AGCTGCGGC------AGCAACAGC----A--ACAAATGTC-------------------------------------------ACAAATGT------------------------CGCA------------G--------CAGG--------C---GCTGTATCCAGTGCAGCAGC--------AGCAGCAGCAGCTGC----------------------------------------------------------------GGCAACAACAACAAC-AACAACAACATCG--CAACCAAAGTCGTCAAAGCCAAAGC------CAAAGCCAC-GCAGCA-G-----------------------------------------------------------------------
droMoj3	scaffold_6496:7276855-7277050 -		CA-GCAGCAGCAGCA-------AC----------------AACA-----------A------------CAACAGCAGCA----------GCAACAGCAGC-------------------------AAC--------ATGCAGCA----CA---TCATCAT----------C--AGCATTTGC------ACGCTCAGC----A--ATTGTTGGCGCAA-AGTCAGCAG-------------------------------------CAA------------CA------------------------------------------------GCAACAACAACAGCAGCAGC--------AGCAACAGCAGCAGC----------------------------------------------------------------AGCAGCAACAACAGC-AACACCAACAGCA-GC---------------------AGCAGGCGG------------------------------------CGGTGCATGCAG-----------------------------------------
droGri2	scaffold_15110:7065279-7065468 -		CA-GCAGCAGCAGCA-------GC----------------AGCA-----------G------------CAGCAGCA----------ACAACAACA-------------------------------ACAG------TGC-GA--GG--CA---ACAACAGCTG-CAAGTCA--ACAGTTG---------------GC----A--ACAGTT-GTGCAA-ACAGAGCGG------CAGCAAGAAGC------------AG---CCACCA------------CA------AC---A----GCAAC-------------------------------------------------------AGCAACAGTAACCGC----------------------------------------------------------------AACAGTAGCAACAGC-AAC---AGCAGCG-GC---------------------GGCAAACGTAG-----AA-GCAGCA-G-----------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CA-GCAGCGACAGCA-------GC----------------GACA-----------C----------CCCGACAACGA--------GA------CATCGGC-------------------------AAC--------ATA-TA--GGTAAG---CCAACTGCCA-AGAACCC--AAAGTTCTC------ACTCTCCAC----C--AAAGTTGGCTCAA-AACGGGTTT------TGGCCAAAAAA-----AACAGACACACAAGACCA------------CG------ACGAA------------A--------AACGTTGAAACGCAAC--------------------ACAAAACT---------------CAACGCAGCAG-------------------------------GAGCGACATGCGGCAAAAGTGC---------------------------------------------------------------------GC-GCGGTG-GTTTG-AA----AAATTAACCATGTTCCCACTTGGCTGT-G-------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................GACAACGA--------GA------CATCGGC-------------------------AAC--------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CA-GCAGCGACACC--------GC----------------GACA-----------C----------CCCGACATCGA--------GA------CATCGGC-------------------------AAC--------ATA-TA--GGTAAG---CCAACTGCCA-AGAACCC--AAAGTTCTC------ACTCTCCAC----C--AAAGTTGGCTCAA-AACGGGTTT------TGGCCAAAAAAA----AAAACACACACAAGACCA------------CG------ACGAA------------A--------AACGTTGAAACGCAAC--------------------ACACAACT---------------CAACGCAGCAG-------------------------------GAGCAACATGCGGCAAAAGTGC---------------------------------------------------------------------GC-GCGGTG-GTTTG-AA----AAATTAACCATGTTCCCACTTGGCTGT-G-------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................C----------------GACA-----------C----------CCCGACATCGA--------GA------CATCGGC-------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
...................................................................CCGACATCGA--------GA------CATCGGC-------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...GCAGCGACACC--------GC----------------GACA-----------C----------CCCGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
....................................................................CGACATCGA--------GA------CATCGGC-------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0

dm3

CG-ACACCC-CAACA-------TC----------------GA-------------------------------------------GA------CATCGGC-------------------------AAC--------ATA-TA--GGTAAG---CCAACTGCCA-AGAACCC--AAAGTTCTC------ACTCTCCAC----C--GAAGTTGGCTCAAAAACGGGTTT------TGGCCAAAAAAAAAAAAAAAAACACACAAGA------------------------CGAA------------A--------AACGTTGAAACGCAAC--------------------GCA--ACT---------------CAACGCAGCAG----------------------CAGCAGCAGCAGCGACATGCGGCAAAAGTGC---------------------------------------------------------------------GC-GCGGTG-GTTCG-AA----AAATTAACCATGTTCCCACCAAAC------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
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............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGACATGCGGCAAAAGTGC---------------------------------------------------------------------GC-...............................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................................................................................................................................................................................................................................................ACT---------------CAACGCAGCAG----------------------CAGCAGC...............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACACA........................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TGGCCAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AAAAAAAAAAAAACACACA......................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACACACA......................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAACA..........................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAAAAAAAAAAACACACA......................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ACAGCAGCGACACC--------GC----------------GACA-----------C------------------CGACACC----GA------CATAGG----------------------------CATATAGA--CA-TA--GGTAAGCAGCCAACTGCCA-AGAACCC--AAAGTTCTC------GCTCTCCAC----TG-AAACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------ACACACGACCA------------CG------ACGA-------------A--------AACGATGAAACGCAA---------------------------CT---------------CAACGCAGC----------------------------------AGCGACATGCGGCAAAAGTGC---------------------------------------------------------------------GC-GCGGTG-GTTTG-AG----AAATTAACCATGTTCCCACTTGGTTGTTG-------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......GCGACACC--------GC----------------GACA-----------C------------------CGACACC----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................ATAGG----------------------------CATATAGA--CA-TA--GG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
..AGCAGCGACACC--------GC----------------GACA-----------C------------------CGACACC----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0

droYak3

CA-GCAGCAACATTGAACATCAGC--------GACACC--GCCA-----------C----------CGCGACACCGACACC----GA------CA-------------------------------GCATATAGA--CG-TA--GGTAAGCGGCCAACTGCCA-AGAACCC--AAAGTTCTC------ACTCTCCAC----TGAAAACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------ACACACGACCA------------CG------AC---C----ACGACGAATACGACG-AACGATGAAACGCAA---------------------------CT---------------CAACGCAGC----------------------------------AGCGACATGCGGCAAAAGTGC---------------------------------------------------------------------GC-GCGGTG-GTTTG-AAAAAAAAATTAACCGTGTTCCCACTTGGTTGTT---------------------------G--TG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...GCAGCAACATTGAACATCAGC--------GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................CCA-----------C----------CGCGACACCGACACC----GA------CA-------------------------------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..........CATTGAACATCAGC--------GACACC--GCCA-----------C----------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................GACACC----GA------CA-------------------------------GCATATAGA--C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............GAACATCAGC--------GACACC--GCCA-----------C----------CGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.......CAACATTGAACATCAGC--------GACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........ATTGAACATCAGC--------GACACC--GCCA-----------C----------CGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0

droEug1

CA-ACATCTT------------TC--------GACAACGCGACA-----------C------------------CGACACC----GA------CA-------------------------------ACATATAAATATA-TA--GGTAAG---CCAACTCCCA--GAACCC--AAAGTTCTC------ACTC--C----TCT--AAACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------AC--ACGACCA------------CG------ACCA------ACGACCAA--CGACC--ACGATGAAACGCAAC--------------------ACA--ACG---------------CAACGAA----AAGCAAC-----------------------GCAGCGACATGCGGCAAAAGTGC---------------------------------------------------------------------TTGGCGGCG-GGTTGAAA----AAATTAACCATGTTACCACTTGGTTGT---------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CG-CCAGCAAC-----------GC----------------GACA-----------------------------------------------------------------------------------CATCCAGA--AA-TT--GGTAAGCCAACAACTGCCA--GAGCCC--AAAGTTCTC------ACTCCCCTCCGTCT--TGACTGGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------AC--ACGGCCAA-----------CG------A---A--------------------------TGAAACAAAA---------------------------CG---------------CAACGCAAC--------------------------------GCAGCGACATGCGGCAAAACTTC---------------------------------------------------------------------GA-GCGGCGGGTTTG-AA----AAATTAACCATGTTCCCACTTTAC------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CA-ACATCGACAAC--------GC----------------GACA-----------C----------CGCGACACCGACACG----GC------CA-------------------------------ACATTTAGATATA-TA--GGTAAG---CCAACTCCCAAAGAACCC--AAAGTTCTC------ACTC--C----TCT--TGACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------AC--ACTACCA------------CG------A---AAGC-------------------------AAACGCAAC--------------------GCA---------------------AACGCA----GCGCAAC----------------------------------------------------------------------------------------------------------------------GCAGCGGGTTTGGAA----AAATTAACCATGTTCCC-------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CA-ACATCGACAACA-------TC----------------GACA-----------A----------CGCGACACCAAAATC----GA------CA------A----CATAA----------------CATATAG----A-TA--GGTAAG---CCAACTCCCA--GAACCTGGAGAGTTCTCCCCCCATCTCTTC----TCT--TAACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------AG--ACGACCA------------CG------A---AC-C---------A--------AACGACGAAACGCAA-----------------------------------------------C-------------------------------------GCAGCGACATGCGGCAAAACTGCGA-------------------------------------------------------------------GC-GGGGCG-GCTTG-AA----AAATTATCCATGTTCCCACTTAAATGGTGGCCCAAACGACAGGCAGGCAGGCAGGCAGGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CA-ACG-CGACA----------GC----------------GACA-----------C----CGAAA--CCGACACCGACA----------TCGACAACGACAA----CATAA----------------CATATAG----A-TA--GGTAAG---CCAACTCCCA--GAACCTGGAGAGTTCTC------CC--TCC----TCT--TAACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------AC--ACGACCA------------CG------A---AA-CAAACGACCAA-ACGACCAAACGGCCAAACGCAA-----------------------------------------------C-------------------------------------GCAGCGACATGCGGCAAAACTGC---------------------------------------------------------------------GA-GCGGCG-GGTTG-AA----AAATTATCCATGTTCCCACTTGG-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CA-GCAACAGCAACA-------GC----------------GACA-----------C------------------CGAAACC----CA--------------------------------------AAC--------ATA-TA--GGTAAG---CCAACTCCCA--GAACCT--GGAGTTCCC------ACTC--C----TCT--TGGCCTGGCTGAAAAACGGGTTT------TGGCCAAAAAC------------AC--ACGACCAA-----------CG------AC-----------------------------------------------------------------------------------CAAC-------------------------------------GCAGCGACATGCGGCAAAACTGC---------------------------------------------------------------------GC-GCGGCG-GGCTG-AA----AAATTAACCATGTTCCCACTTGA-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CG-GCAGCAGCAGCA-------GC----------------AACA-----------C------------CAACGGCA---------GG------CA-------GCAACTTGGCAATTGATTTGGCCAAC--------ATA-CG--GG----CTGCTGATTGCCA-GCAAC-----------------------------------TGACTTGGTTT---------CTT------TGACTAATGAC------------ACAAACGACAA------------CA------GC---A----GCAAC-------------------------------------------------------AGCAACAATGAGTGC----------------------------------------------------------------AACAGCAGCAGCAGC-ACC---AGCAACATGT---------------------TGCAGACACGC-----GC-GCATC--GTTAG-CA----AAATGAACCAACTTC---------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GA-CTCGAGAGGATA-------GA----------------GACCCTGCTG------------------------CA----------A------CATCG--------CATAA----------------G--------TTA-GA--GGTAAGAAGGCAACTCCCA--GAACCG--C--GCCCGC------ACTCTCA---TTCT--GGACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAC------------TCCCAAGACAAGACTCGACTCTACACTCCACA-----------------------------------C-------------------------TCCATACT---------------CCACGCAACAC-------------------------------G---GAC---------------------------------------------------------------------GC------AC-------------------------------AGGCCATGTTACCAC-----------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......GAGAGGATA-------GA----------------GACCCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
........GAGGATA-------GA----------------GACCCTGCTG------------------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...........................................................................A----------A------CATCG--------CATAA----------------G--------TTA-GA--GGTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................AAAC------------TCCCAAGACAAGACTCGACC.......................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...CTCGAGAGGATA-------GA----------------GACCCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................................................TG------------------------CA----------A------CATCG--------CATAA----------------G--------TTA-GA--GGTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
............ATA-------GA----------------GACCCTGCTG------------------------CA----------A------CATCG--------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0

droBip1

CG-AGAGACGAGACT-------CGAGAGGATAGA------GACCCTGCTG------------------------CA----------A------CATCG-----------------------------CATAAAG--TTA-GA--GGTAAG---GCAACTCCCA--GAACCG--CG--CCCGC------ACGCTCA---TTCT--GGACTTGGCTCAA-AACGGGTTT------TGGCCAAAAAG------------AG--CCGACTC----------CACACTCCACACTTC------------A----------------TAC-------------------------TCCATACT---------------CCACGCAACAC-------------------------------GGACGAC---------------------------------------------------------------------GC------AC-------------------------------AGGCCATGTTACCAC-----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TC-ACAGACAAACCA-------CT----------------GAT------GCAGCGCGAACCGAACC---------A-----AACG-----------------CCCATCTGGCCGCGTTCTTGGCCCTC--------TCAC-T--AG----G---------------------------------------CCCTCGC----C--TGGCCTGGCTCAA-AACGGGTTTGGTTTGTGGCCAAAAAC-------ACAGCACACA--------------------------------------------------------------------------------------------------------------------------GCGTGAGGCAGAACTCCAGTAGAGTCACC-----------------------------------------------------------------------------------AGTAG-AGTT-----C-------------------------------------------G---------------------------G--CT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................ACACA--------------------------------------------------------------------------------------------------------------------------GCGTGAGGCAGAACTCCAGT........................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

TC-ACAGACAAACCA-------CT----------------GAT------GCAGCGCGAACCGAACC---------A-----AACG-----------------CCCATCTGGCCGCGTTCTTGGCCCTC--------TCAC-T--AG----G---------------------------------------CCCTCGC----C--TGGCCTGGCTCAA-AACGGGTTTGGTTTGTGGCCAAAAAC-------ACAGCACACA--------------------------------------------------------------------------------------------------------------------------GCGTGAGGCAGAACTCCAGTAGAGTCACC-----------------------------------------------------------------------------------AGTAG-AGTT-----C-------------------------------------------G---------------------------G--CT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............CCA-------CT----------------GAT------GCAGCGCGAACCGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.............CA-------CT----------------GAT------GCAGCGCGAACCGAACC---------A-----AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGTGAGGCAGAACTCCAGTAGAGT...................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droWil2

CA-GCAACAACAACA-------GC----------------AACA-----------A------------CAACAACA----------A------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---A----GCAGC-------------------------------------------------------AGCAACAACAAGCTA----------------------------------------------------------------AGCATCAGCAACAGCTTAC---AG---------------------------------------------CC-GCCCTA-ATCCA-AC----AACAAAATCGAGTTCTTGCCCAGCAAA-G------------------------------C	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................ACA----------A------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---A----GCAGC-------------------------------------------------------AGCAAC................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
...........................................................................A----------A------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---A----GCAGC-------------------------------------------------------AGCAACAACA............................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.......CAACAACA-------GC----------------AACA-----------A------------CAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0

droVir3

CA-GCAGCAGCAGCA-------GC----------------GGCA-----------G------------------------------G------CA----------------------------------------------GCG----TA---TCAGCAG----------C--AGCTGCGGC------AGCAACAGC----A--ACAAATGTC-------------------------------------------ACAAATGT------------------------CGCA------------G--------CAGG--------C---GCTGTATCCAGTGCAGCAGC--------AGCAGCAGCAGCTGC----------------------------------------------------------------GGCAACAACAACAAC-AACAACAACATCG--CAACCAAAGTCGTCAAAGCCAAAGC------CAAAGCCAC-GCAGCA-G-----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................................................................................T------------------------CGCA------------G--------CAGG--------C---GCTGTATCCA........................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
..................................................................................................................................................................................................................GTC-------------------------------------------ACAAATGT------------------------CGCA------------G--------CAGG--------C---..................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACATCG--CAACCAAAGT..............................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GTC-------------------------------------------ACAAATGT------------------------CGCA------------G--------CAGG--------C---GCTGT.............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AGCAACAGC----A--ACAAATGTC-------------------------------------------A..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................C-------------------------------------------ACAAATGT------------------------CGCA------------G--------CAGG--------C---GCT...............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TA---TCAGCAG----------C--AGCTGCGGC------AGCA...........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGTCGTCAAAGCCAAAGC------C........................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGTCAAAGCCAAAGC------.........................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.A-GCAGCAGCAGCA-------GC----------------GGCA-----------G------------------------------G------CA----------------------------------------------GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
..................................................................................................................................................................................................................GTC-------------------------------------------ACAAATGT------------------------CGCA------------G--------CAGG--------C---GCTGTA............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CAACAGC----A--ACAAATGTC-------------------------------------------ACAAATGT------------------------CGC........................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............A-------GC----------------GGCA-----------G------------------------------G------CA----------------------------------------------GCG----TA---TCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AAATGTC-------------------------------------------ACAAATGT------------------------CGCA------------...........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AACAACAACATCG--CAACCAAAGT..............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................C-------------------------------------------ACAAATGT------------------------CGCA------------G--------CAGG--------C---GCTG..............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................G----TA---TCAGCAG----------C--AGCTGCGGC------AGC............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCCAAAGC------CAAAGCCAC-GCAGCA-........................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TCCAGTGCAGCAGC--------AGCAGCA...............................................................................................................................................................................................................................	21	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CAG----------C--AGCTGCGGC------AGCAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.A-GCAGCAGCAGCA-------GC----------------GGCA-----------G------------------------------G------CA----------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GCAGCAGCAGCA-------GC----------------GGCA-----------G------------------------------G------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GTGCAGCAGC--------AGCAGCAGCAGCT.........................................................................................................................................................................................................................	23	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAAC-AACAACAA...............................................................................................................................	22	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.A-GCAGCAGCAGCA-------GC----------------GGCA-----------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGTGCAGCAGC--------AGCAGCA...............................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CA-GCAGCAGCAGCA-------AC----------------AACA-----------A------------CAACAGCAGCA----------GCAACAGCAGC-------------------------AAC--------ATGCAGCA----CA---TCATCAT----------C--AGCATTTGC------ACGCTCAGC----A--ATTGTTGGCGCAA-AGTCAGCAG-------------------------------------CAA------------CA------------------------------------------------GCAACAACAACAGCAGCAGC--------AGCAACAGCAGCAGC----------------------------------------------------------------AGCAGCAACAACAGC-AACACCAACAGCA-GC---------------------AGCAGGCGG------------------------------------CGGTGCATGCAG-----------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAACAGCA-GC---------------------AGCAGGCGG------------------------------------C....................................................	23	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA-GC---------------------AGCAGGCGG------------------------------------CGGTGC...............................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGCGG------------------------------------CGGTGCATGCA..........................................	20	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-GC---------------------AGCAGGCGG------------------------------------CGGTGC...............................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................GTCAGCAG-------------------------------------CAA------------CA------------------------------------------------GCAAC.............................................................................................................................................................................................................................................................	18	11	0.09	1	1	0	0	0	0	0
............GCA-------AC----------------AACA-----------A------------CAACAGCAGCA----------GCAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	12	0.08	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................C--------AGCAACAGCAGCAGC----------------------------------------------------------------AGCA...................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.......................C----------------AACA-----------A------------CAACAGCAGCA----------GCAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.....................................................................AACAGCAGCA----------GCAACAGCAGC-------------------------AAC--------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AACACCAACAGCA-GC---------------------AGCAG.............................................................................................	21	20	0.05	1	1	0	0	0	0	0
.....................................................................AACAGCAGCA----------GCAACAGCAGC-------------------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC----------------------------------------------------------------AGCAGCAACAACAGC-A......................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CA------------------------------------------------GCAACAACAACAGCAGCAGC--------AGCA..................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAGC--------AGCAACAGCAGCAGC----------------------------------------------------------------A......................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.A-GCAGCAGCAGCA-------AC----------------AACA-----------A------------CAACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................GCAG-------------------------------------CAA------------CA------------------------------------------------GCAACAACAACAGCAGC.................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GCAGC--------AGCAACAGCAGCAGC----------------------------------------------------------------AGC....................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
.......................................................A------------CAACAGCAGCA----------GCAACAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGC--------AGCAACAGC.............................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC--------AGCAACAGCAGCAGC----------------------------------------------------------------A......................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
........AGCAGCA-------AC----------------AACA-----------A------------CAACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0

droGri2

CA-GCAGCAGCAGCA-------GC----------------AGCA-----------G------------CAGCAGCA----------ACAACAACA-------------------------------ACAG------TGC-GA--GG--CA---ACAACAGCTG-CAAGTCA--ACAGTTG---------------GC----A--ACAGTT-GTGCAA-ACAGAGCGG------CAGCAAGAAGC------------AG---CCACCA------------CA------AC---A----GCAAC-------------------------------------------------------AGCAACAGTAACCGC----------------------------------------------------------------AACAGTAGCAACAGC-AAC---AGCAGCG-GC---------------------GGCAAACGTAG-----AA-GCAGCA-G-----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_19398

2r:10811213-10811362 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads