ID:

dsi_19393

Coordinate:

3l:7936854-7936918 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7936717_7936853_-]; CDS [3l_7936717_7936853_-]; CDS [3l_7936919_7938683_-]; exon [3l_7936919_7938683_-]; intron [3l_7936854_7936918_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------################################################## GTCCTAGTGCCCATTCCACAAGAATTCGATAGCTTTAAAAACTATAGAGAGTGAGTTTTTGTTGTTGATAGTCTTCTAGTCTCTACACTATTTAACCCTAAATACATTTTCGCAGGATATTTGTGCCCTTAATGAAGCTGGAGCTGCTTTCCACCATCGAAAGAG ************************************************((((((.((((..(((((((((..............)))).)))))..)))).))....))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR553488 RT_0-2 hours eggs
.................................................................................................................................TAATGAAGCTGGAGCT....................	16	0	2	0.50	1	1	0	0	0	0
....................................AAAAACTATACAGAGT.................................................................................................................	16	1	5	0.20	1	0	1	0	0	0
.....AGTGTCGATTCCACAAGTA.............................................................................................................................................	19	3	8	0.13	1	0	0	1	0	0
...................................................................................................................................TTGAAGCTGGAGCTGTTTT...............	19	2	11	0.09	1	0	0	0	1	0
.......................................................................TCTTCTAGTCTCCACC..............................................................................	16	2	20	0.05	1	0	0	0	0	1

Anti-sense strand reads

CAGGATCACGGGTAAGGTGTTCTTAAGCTATCGAAATTTTTGATATCTCTCACTCAAAAACAACAACTATCAGAAGATCAGAGATGTGATAAATTGGGATTTATGTAAAAGCGTCCTATAAACACGGGAATTACTTCGACCTCGACGAAAGGTGGTAGCTTTCTC ************************************************((((((.((((..(((((((((..............)))).)))))..)))).))....))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
............................................................................................................................................ATCGACGAAGGGTGGTAGCGT....	21	3	2	0.50	1	1	0	0
......CACGGGTAATGTGTTCTTGG...........................................................................................................................................	20	3	4	0.25	1	0	1	0
.......................................................AAAAAAAACAACTAGCAGA...........................................................................................	19	2	20	0.05	1	1	0	0
.......ACGGGTAATGTGTTCTTTG...........................................................................................................................................	19	3	20	0.05	1	0	1	0
.................................................................................AGATGTGATATGTTGG....................................................................	16	2	20	0.05	1	0	0	1

Generated: 04/24/2015 at 10:33 AM