ID:

dsi_1938

 Coordinate:

2l:12623970-12624209 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2l_12624210_12624342_-]; CDS [2l_12624210_12624285_-]; exon [2l_12623272_12623969_-]; CDS [2l_12623272_12623969_-]; intron [2l_12623970_12624209_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGAGGAGCGCGAGTCGGAGTATGGCCGTGTCTACGCGGTATCCGGACCAGGTAAGCGACGTCACCAGCGTCCTTCATGCGCTGACCCCCAAGATCTCTAATCCTTAAATTTCCTATTTTCTTTCTGCTGTTCTTAACTGTACTCCTCCACATTTTCCTTCTTATCCTTCCTTATTATCCTGCTTCCCCTTTTAATATTTCTGTATGCTTTCTTCTTCCTCCTGTTCCGGATAATCTTCCTCATTATGCTAATCATTTTTGTCTTCTCCAACAACTTTAAACCCACTTCAGTGGTCACGGCGGAGGCCATGTCTGGATCCGCTATGTACGAGCTGGTCCGC
**************************************************...((((.......((((((.......))))))........(((.....)))......................(((.(((...))).)))...............................(((((((.((........................................))...)))))))...........)))).........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................................................................................................................................................................GGCGGAGGCCATGTCTGGATCC..................... 22 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................................................................................................................................TCTGGATCCGCTATGTACGA.......... 20 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................TTCTTCTTCCTCCCGTTC.................................................................................................................. 18 1 2 0.50 1 0 1 0 0
...........................................................................................................................................................................................................................................................................................................CGGAGCCCATGTCTGG......................... 16 1 2 0.50 1 0 0 0 1
.............................................................................................................................................................................................................................................................................................................GAGGCCATGTCTGGA........................ 15 0 2 0.50 1 0 1 0 0
................................................AGGTAAGGGAAGTCACCA.................................................................................................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 1 0
...............................................CAGGTAAGTGACGTTACC................................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 1 0
............................................................................................................................................................................................................................................................................................................GGAGGCCAAGTCTGG......................... 15 1 14 0.07 1 0 1 0 0
.....................................................................................................................................................................................................................................................................................................................GTCGGGATCCGCTAAG............... 16 2 20 0.05 1 0 0 0 1

Anti-sense strand reads

GCTCCTCGCGCTCAGCCTCATACCGGCACAGATGCGCCATAGGCCTGGTCCATTCGCTGCAGTGGTCGCAGGAAGTACGCGACTGGGGGTTCTAGAGATTAGGAATTTAAAGGATAAAAGAAAGACGACAAGAATTGACATGAGGAGGTGTAAAAGGAAGAATAGGAAGGAATAATAGGACGAAGGGGAAAATTATAAAGACATACGAAAGAAGAAGGAGGACAAGGCCTATTAGAAGGAGTAATACGATTAGTAAAAACAGAAGAGGTTGTTGAAATTTGGGTGAAGTCACCAGTGCCGCCTCCGGTACAGACCTAGGCGATACATGCTCGACCAGGCG
**************************************************...((((.......((((((.......))))))........(((.....)))......................(((.(((...))).)))...............................(((((((.((........................................))...)))))))...........)))).........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 SRR902008
ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
....................................................................................CGGGGTTCTGGAGATTAGTAA........................................................................................................................................................................................................................................... 21 3 3 19.00 57 33 11 12 1 0 0 0 0 0 0
.....................................................................................GGGGTTCTGGAGATTA............................................................................................................................................................................................................................................... 16 1 2 13.50 27 21 5 0 1 0 0 0 0 0 0
.....................................................................................GGGGTTCTGGAGATTAG.............................................................................................................................................................................................................................................. 17 1 2 11.00 22 17 5 0 0 0 0 0 0 0 0
.....................................................................................GGGGTTCTGGAGATTAGTAA........................................................................................................................................................................................................................................... 20 2 3 7.33 22 15 7 0 0 0 0 0 0 0 0
....................................................................................CGGGGTTCTGGAGATTA............................................................................................................................................................................................................................................... 17 2 13 4.77 62 50 8 0 3 0 0 0 0 1 0
.....................................................................................GGGGTTCTGGAGATT................................................................................................................................................................................................................................................ 15 1 4 4.00 16 10 5 0 0 0 0 0 0 1 0
....................................................................................CGGGGTTCTGGAGATTAG.............................................................................................................................................................................................................................................. 18 2 6 2.83 17 10 5 2 0 0 0 0 0 0 0
...................................................................................TCGGGGTTCTGGAGATTAGTAA........................................................................................................................................................................................................................................... 22 3 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGGAGGACAAGGACTATTAGT........................................................................................................ 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................GGGGTTCTGGAGATTAGTA............................................................................................................................................................................................................................................ 19 2 3 1.67 5 3 2 0 0 0 0 0 0 0 0
.....................................................................................GGGGTTCTGGAGATTAGT............................................................................................................................................................................................................................................. 18 2 6 1.50 9 7 2 0 0 0 0 0 0 0 0
......................................................................................GGGTTCTGGAGATTAGTAA........................................................................................................................................................................................................................................... 19 2 3 1.33 4 1 0 0 0 0 0 1 2 0 0
....................................................................................GGGGGTTCTGGAGATTAGTAA........................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
....................................................................................CGGGGTTCTGGAGATTAGTAAT.......................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................TCAAACCGGCACAGAT................................................................................................................................................................................................................................................................................................................... 16 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................GGGTTCTGGAGATTAGTA............................................................................................................................................................................................................................................ 18 2 3 0.67 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................GGTTCTGGAGATTAGTAA........................................................................................................................................................................................................................................... 18 2 5 0.60 3 2 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAGGAGGACAAGGACTATTAAAT....................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............CATCCTCAGACCGGCACA...................................................................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.................TCAGACCGGCACAGAT................................................................................................................................................................................................................................................................................................................... 16 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TATGAAAGAAGAAGGAGAAC..................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................GGTTCTGGAGATTAGTA............................................................................................................................................................................................................................................ 17 2 9 0.44 4 4 0 0 0 0 0 0 0 0 0
....................................................................................AGGGGTTCTGGAGATTA............................................................................................................................................................................................................................................... 17 2 6 0.33 2 2 0 0 0 0 0 0 0 0 0
.....................................................TCGCTGCACTAGTGGCAGGA........................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
...............CCTCAGACCGGCACA...................................................................................................................................................................................................................................................................................................................... 15 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
................CTCAGACCGGCACAG..................................................................................................................................................................................................................................................................................................................... 15 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................GATGTAAAAGGAAGAGTATGAA............................................................................................................................................................................ 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1
..............................................CGTCCATTCGCTGCAGCG.................................................................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
........................................................................................GTTCTGGAGATTAGTAA........................................................................................................................................................................................................................................... 17 2 13 0.31 4 2 2 0 0 0 0 0 0 0 0
........................................AGACCTGGTCCATTC............................................................................................................................................................................................................................................................................................. 15 1 7 0.29 2 1 0 0 1 0 0 0 0 0 0
......................................................................................GGGTTCTGGAGATTAG.............................................................................................................................................................................................................................................. 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TAGGAAAAACAGAAG........................................................................... 15 1 20 0.20 4 0 0 0 0 4 0 0 0 0 0
............CATCCTCAGACCGGCAC....................................................................................................................................................................................................................................................................................................................... 17 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AAAGAACAAGAAGGACATGGC................................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................AAAAACAGGAGAGGTTTTT................................................................... 19 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................GACGTTGTTGAAATT............................................................. 15 1 20 0.15 3 2 1 0 0 0 0 0 0 0 0
....................................................................................CGGGGTTCTGGAGATTAGTA............................................................................................................................................................................................................................................ 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGAAGTAGGAGGAAAAGGGCTA............................................................................................................. 22 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................AGTGTAAAAGGAAGAATAAGAG............................................................................................................................................................................ 22 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GGACGAAGGGTAAAA.................................................................................................................................................... 15 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0
................................................................................................................................................................................................................................................................................................TCACTAGTGCAGCCTCTGG................................. 19 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0
.....................................................TCGATGCAGTGGTCGGAGC............................................................................................................................................................................................................................................................................ 19 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0
................CTCAGACTGGCACAGA.................................................................................................................................................................................................................................................................................................................... 16 2 14 0.07 1 0 0 0 0 0 0 0 0 1 0
.....................................GATAGGCCTGGACCATTCA............................................................................................................................................................................................................................................................................................ 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1
...............................................................................CGACTGGAGGTTGTAGAGGT................................................................................................................................................................................................................................................. 20 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0
...................................................................................TAGGGGTTCCGGAGATTAG.............................................................................................................................................................................................................................................. 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................GGTTGTCGAAATTTG........................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................TTAGGACGAAGTGGAAATT................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................................GTCACTAGTGCAGCCT..................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:12623920-12624259 - dsi_1938 CGAGGAGCGCGAGTCGGAGTATGGCCGTGTCTACGCGGTATCCGGACCAGGTAAGCGA------CGTCACCAG--CGTCCTTCATGCG-CTGACCCCC----AAGATCT--CTAATCC-------TTAAATTTCC--TA--------------------------------TTTTCTTTCTGCTGTTCTTAACTGTACTCCTCCACATTTTCCTTC-----TTATCCTTCCTTATTATCCTGCTT------CC----------------------------CCTTTTAATATTTCTGTATGCTTTCTTC---TTC------CTCCTGTTCCGGATAATCTTCCT------------------CATTATG------------------------------------------------------------------CTAATC---------ATT-------------------------T-TTGTC----------T-TCTCCAAC-----------------------AACTTTAAA--C-----C----CACTTCAGTGGTCACGGCGGAGGCCATGTCTGGATCCGCTATGTACGAGCTGGTCCGC
droSec2 scaffold_16:1158724-1159010 - CGAGGAGCGCGAGTCGGAGTATGGCCGTGTCTACGCGGTATCCGGACCAGGTAAGCGA------CGTCACCAG--CGTCCTTCATGCG-CTGACCCCC----AAGATCT--CTAAT-------------------------------------------------------------------------------------------------------------CCTTCCTTATTATCCTGCTT------CC----------------------------CCTTTTAATATTTCTGTATGCTTTCTTC---TTC------CTCCTGTTCCGGATAATCTTCCT------------------CATTATG------------------------------------------------------------------CTAATC---------ATT-------------------------T-TTGTCCGGCTTTTCCT-TCCCCAAC-----------------------AACTTGAAA--C-----C----CACTTCAGTGGTCACCGCGGAGGCCATGTCTGGATCCGCTATGTACGAGCTAGTCCGC
dm3 chr2L:13003271-13003633 - CGAGGAGCGCGAGTCGGAATATGGCCGTGTCTACGCGGTATCCGGACCAGGTAAGCGA------CGTCACCAG--CGTCCTTCATGCG-CTGACCCCC----AAGTTCTG--TAATCC-------TTAATCCT-----GC-----------------------------------CTTTCTTCTGTTCTTAATTATACTCCTCCACATCTTCCTTT-----TTATCCTTCCTTATTATC---CTT------CT----------------------------CCTTTTCATATTTCTGTATGCTTTCTTCCCCCTC------CTCCTGTTCCGCATAATCTTCCT------------------CATTATGCT---------GC------------------------------------TCTCTCCACTCC--TTGCTAATC---------ATA-------------------------T-TTCTCCTGCTTTTCCT-CCTTCAAC-----------------------AACTTTAAA--T-----C----CACTTCAGTGGTCACCGCTGAGGCCATGTCTGGATCAGCTATGTACGAGTTGGTCCGC
droEre2 scaffold_4929:12441135-12441474 + CGAGGAGCGCGAGTCGGAGTATGGCCGTGTCTACGCGGTATCCGGACCAGGTAAGCGA------TGTCCCCAT--CGTCCTCCATG---------CCC----AAGACCT----AATCTCTAATCTCTACATTT-----------------------------------------------------------ATTTACTTCCCCATATCCTTCTCCGCCATTCTTCCTTCTTCATTATCATGCTT------CT----------------------------CGGTTTTATCCTTCGGCCTACCTTCTTG---TTCCTCCTTCTTCT----------------------------ATTGCCCT------------TTTTCTGT------------------------------------TCCTCCCACTCCGTCTCCTTAT----------ATA-------------------------TTTGCTCCTGCTTTTCCT-CCCCGAAC-----------------------TACCG-CAA--C-----C----CCCCTCAGTGGTCACCGCGGAGGCCATGTCTGGATCCGCTATGTACGAGCTGGTCCGA
droYak3 2L:9421744-9422177 - CGAGGAGCGCGAGTCAGAGTATGGCCGTGTCTACGCGGTATCCGGACCAGGTAAGCGA------CGTCACCAG--CGTCCTTCATGCG-CTGACCCCC----AAGACCTGGCTAAT-------CTCTATATTTCC--TGC-------------------------------GTTTCTTTCTCTTGTTCTTGAATTTACACTCCTACATCCTTCTCCTTCATTCATTCTTCTTCATTATCATGCTT------CT----------------------------TGTTATTATCCATCGTCCTGATTTCTTG---TTCCTCCTTCTCCTGTTCCGCATAAACCTCCTGTTCGTCTTCATTGCCCTCACTATGATCTCTTTTTTGT------------------------------------TCCTTCCACTTCGTCTGCTAATT-----------C-------------------------TTTGCTCCTGTTTCTCCT-CCTCCAACTTTGCCCCTTCTTCTCCTCCTTCAACT--GACCCC-----A----CAACTCAGTGGTCACCGCGGAGGCCATGTCTGGATCCGCTATGTACGAGCTGGTGCGC
droEug1 scf7180000406904:72715-73050 - CGAGGAGCGCGAGTCGGAATATGGCCGTGTCTACGCGGTTTCGGGACCAGGTGAGCGA------CGTCACCAG--CGTCCTTCAGTCG-CTGACTCCC----AAGATCTAACTAAT-------CTCTTAATTTCT--CGC---TCATTTCCCG----------ACTGTTCTTCATCCTTTTTCTGCTAATT------------------TTA------------------------------CTTCTCGTTTTCTTT-----------------------------------------ATGTTGT---------------------------------------------------------CTTTATGAT---------GTCTTCGCTACTCCTTATGTTTATCCTAACGCTGTTTCTC------------TTGCTAATCCATTGTTTCATGACCCTTATCATCCCGT----------------------TC---T----------------------------------TTTATT--C-----C----CCTTTTAGTGGTCACCGCGGAGGCCATGTCTGGATCCGCAATGTACGAGTTGGTACGC
droBia1 scf7180000301518:145616-145932 - CGAGGAGCGCGAGTCGGAATACGGCCGTGTCTACGCGGTGTCGGGACCAGGTAGGCGA------CGTCACCAG--CGTCCTTCAATCG-CTGACCCCC----GAGATTCGGCTTAT-------CTTGATGT--GCTATTTTTCC-------------------------------------------------------------------------------------------------------------------------------------ATG-------AGCTCTTTG-----TCCT---CCTCATT------CTCCTGCTCCTTTCAAATGAATA------------------C---------------------TGCTAC-TCCACCTGTAATCGTCCTGCTCCTCTTTC------------CTGCTGATCCTAC---------------TAATCCCGCTGACTTATCC-TTCTA----------CTC-ACTACT-----------------------CTCCT-CAA--------C----CCTCTTAGTGGTCACCGCGGAGGCTATGTCCGGATCTGCCATGTACGAGCTGGTGCGC
droTak1 scf7180000415871:799411-799691 + CGAGGAGCGCGAGTCGGAATATGGCCGAGTGTACGCGGTTTCGGGACCAGGTAAGCGA------CGTCACCAG--CGTCCTTCAATCG-CTGACCCCC----CAGATTTGGCTAAT-------CTCCGAGTGCGCTTTGCTTCTCTTGTGCCT----------CCTGCTTCTCATTTTCCCCCTATTCATT---------------------------------------TTTATCGTCCTGCTTCTCATTCTCCTTTAAATTCGAATCC----------------------------------------------------------------------------------------------------------------CTTCGCTCTTCCTCCTGCTTCTTTCCTTATTTATCTTC------------CTGCTAATCCTACGTCTCATC-------------------------T-TTCTC----------CTT-TTCATC-----------------------CTCTTT--------------------------------------------------------------------------
droEle1 scf7180000491028:2091659-2091768 + CGAGGAGCGCGAGTCCGAGTATGGACGTGTCTACGCGGTTTCGGGACCAGGTAAGTGA------CCTCACCAG--CGTCCTTCAATCG-CTGACCCCCCCCAAAGATCTGGCTAAT-------CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000778080:63072-63317 - CGAGGAGCGCGAGTCGGAGTACGGCCGTGTCTACGCGGTTTCGGGACCAGGTAAGCTA------CGTCCCCAG--CGTCCTTCAATCG-CTGACCCTC----AAGATCTGGCTAAT-------CTCTGTGC--GTTCTGTTTCTAATGCGACTCTGCTGGTCCCCCGCCTCT------------------------------------------------------------------------------------------------CC----------------------------------------------------------------------------------------------------------------CCTTGCTCT-----------------------------------------------------------------------------------------TTCTCCTG-----------CTCCTC--------------------------------CACTTCTCGTTTCCCTTTCAGTGGTCACCGCGGAGGCCATGTCGGGATCAGCTATGTACGAGTTGGTCCGC
droFic1 scf7180000454175:111575-111821 - TTTCTAT------------------------------------------------------------------------------------------------------------TCT-------TCTAAACTTT--TC--------------------------------TTCTTGTTCCTCCGTTTATATTTATGCCTCTGTCCATCCTACT------------------------------GTTCATCAATATATAAACTCTGATTATTTCTCAATATCCGTTTAACAATCCT-----TTAT---CCTCATG------TTCATGTTCTGGTTAATTAACCA------------------C---------------------TTGAAC----------------------------------------------TTTCC---------ATA-------------------------A-TTCTTATGCTTTTCCT-TTTC--------------------------------------C-----C----CCTTTCAGTGGTCACCGCGGAGGCCATGTCGGGATCGGCTATGTACGAGTTGGTCCGC
droKik1 scf7180000302472:1403971-1404093 - CGAGGAGCGCGAGTCGGAGTATGGCCGTGTCTATGCGGTCTCTGGCCCAGGTAGGCGA------CGTCACCCG--CGTCCTTCACTCG-CTGACCCCG----TAGATCGGTCTAATCC-------GGATTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG------------------------------CCGCTCT----------------
droAna3 scaffold_12916:12437445-12437526 + ATCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTT------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTT-----ACCC-CTAC--------------------------------------C-----G----TTATTCAGTCGTCACTGCCGAGGCCATGTCCGGATCGGCTATGTACGAGCTGGTGCGC
droBip1 scf7180000396769:780853-780926 + CGAGGAGCGCGAGTCGGAATATGGACGCGTCTATGCGGTGTCTGGTCCAGGTGAGCAG------TTTTACGAA--AGTGCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 4_group4:643145-643254 + TGAGGAGCGTGAGTCCAAATATGGACGTGTCTTCGCTGTTTCGGGTCCTGGTAAGTAA------CCAGACATATTCCCCCTCCAGCCG----ATATCT----AACCC---CCTAACCT-------CCAATTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
droPer2 scaffold_46:413863-413972 - TGAGGAGCGTGAGTCCAAATATGGACGTGTCTTCGCTGTTTCGGGTCCTGGTAAGTAA------CCAGACATATTCCCCCTCCA---G-CCGATATCT----AACAC---CCTAACCT-------CCAATTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
droWil2 scf2_1100000004521:6038098-6038228 - CGAGGAACGTGAATCCGAATATGGTCGAGTGTACGCCGTCTCCGGTCCGGGTAAGGAGGCCAGACGTCAACTT--TGTCCTTCACCTGACTGACCCTT----AACTCTTC---A---------------TTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC------------TTCCCAAT--------------------------------T-------T----TTTTTTACT-------------------------------------------------
droVir3 scaffold_12963:6858582-6858665 - CGAGGATCGCGAATCCGAATACGGTCGCGTGTACGCTGTCTCTGGTCCGGGTAAG--A------CGTCACCTT--TGTCCTTCACCTG-CTGACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:26037303-26037424 - CT----------------------------------------------------------------------T--TGTCCTTCACCTG-CTGACCCGC----CCTATCTAC--A-T-----------------------------------------------------------------------------------------------------------------CTATATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------TTCTC----------C-TCCCCAAC--------------------------------CAC-----C----CCTTTTAGTCGTTACGGCAGAGTGTATGTCGGGCTCTGCTATGTACGAGCTGGTACGT
droGri2 scaffold_15252:10029091-10029176 - CGAGGACCGCGAATCCGAATACGGGCGCGTCTACGCCGTCTCCGGTCCAGGTAAG--A------TTTCAACTT--TGTCCTTCAACTG-CTGACCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGAGGAGCGCGAGTCGGAGTATGGCCGTGTCTACGCGGTATCCGGACCAGGTAAGCGA------CGTCACCAG--CGTCCTTCATGCG-CTGACCCCC----AAGATCT--CTAATCC-------TTAAATTTCC--TA--------------------------------TTTTCTTTCTGCTGTTCTTAACTGTACTCCTCCACATTTTCCTTC-----TTATCCTTCCTTATTATCCTGCTT------CC----------------------------CCTTTTAATATTTCTGTATGCTTTCTTC---TTC------CTCCTGTTCCGGATAATCTTCCT------------------CATTATG------------------------------------------------------------------CTAATC---------ATT-------------------------T-TTGTC----------T-TCTCCAAC-----------------------AACTTTAAA--C-----C----CACTTCAGTGGTCACGGCGGAGGCCATGTCTGGATCCGCTATGTACGAGCTGGTCCGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGAGGCCATGTCTGGATCC.....................2211.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGATCCGCTATGTACGA..........2011.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCATGTCTGGA........................1520.50100000000010000000
droSec2
CGAGGAGCGCGAGTCGGAGTATGGCCGTGTCTACGCGGTATCCGGACCAGGTAAGCGA------CGTCACCAG--CGTCCTTCATGCG-CTGACCCCC----AAGATCT--CTAAT-------------------------------------------------------------------------------------------------------------CCTTCCTTATTATCCTGCTT------CC----------------------------CCTTTTAATATTTCTGTATGCTTTCTTC---TTC------CTCCTGTTCCGGATAATCTTCCT------------------CATTATG------------------------------------------------------------------CTAATC---------ATT-------------------------T-TTGTCCGGCTTTTCCT-TCCCCAAC-----------------------AACTTGAAA--C-----C----CACTTCAGTGGTCACCGCGGAGGCCATGTCTGGATCCGCTATGTACGAGCTAGTCCGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCCGCTATGTACGAGCTA......2211.0011000
............GTCGGAGTATGGCCGTGTCTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
dm3
CGAGGAGCGCGAGTCGGAATATGGCCGTGTCTACGCGGTATCCGGACCAGGTAAGCGA------CGTCACCAG--CGTCCTTCATGCG-CTGACCCCC----AAGTTCTG--TAATCC-------TTAATCCT-----GC-----------------------------------CTTTCTTCTGTTCTTAATTATACTCCTCCACATCTTCCTTT-----TTATCCTTCCTTATTATC---CTT------CT----------------------------CCTTTTCATATTTCTGTATGCTTTCTTCCCCCTC------CTCCTGTTCCGCATAATCTTCCT------------------CATTATGCT---------GC------------------------------------TCTCTCCACTCC--TTGCTAATC---------ATA-------------------------T-TTCTCCTGCTTTTCCT-CCTTCAAC-----------------------AACTTTAAA--T-----C----CACTTCAGTGGTCACCGCTGAGGCCATGTCTGGATCAGCTATGTACGAGTTGGTCCGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCATGTCTGGATCAGCT..................1925.50110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000010010000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000200000000100000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACGAGTTGGTCCGC1825.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000000000200000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCATGTCTGGATCAGCT..................2124.5090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTACGAGTTGGTC...1824.5090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCATGTCTGGATCAGCTATG...............2423.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000200000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGTCTGGATCAGCT..................1823.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCATGTCTGGATCAGC...................1822.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTACGAGTTGGTCCGC2122.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTACGAGTTGGTCC..1922.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGCTGAGGCCATGTCTGGATCA.....................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGGATCAGCTATGTACGAGT........2621.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCATGTCTGGATCA.....................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TCCTTCCTTATTATC---CTT------CC----------------------------T......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
........GCGAGTCGGAATATGGCCGTGTCTACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................CGTGTCTACGCGGTATCCGGACCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGATCAGCTATGTACGAG.........2221.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTACGAGTTGGTCCGC2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGGATCAGCTATGTAC............2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGGAGCGCGAGTCGGAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGGATCAGCTATGT..............1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......CGCGAGTCGGAATATGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................GGCCGTGTCTACGCGGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--T-----C----CACTTCAGTGGTCACCG.........................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GCGAGTCGGAATATGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTACGAGTTGGTCCG.2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTACGAGTTGGTCCG.1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................TATCCTTCCTTATTATC---CTT------CT----------------------------.......................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGATCAGCTATGTACGAGTTGG.....2521.0020000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTACGAGTTGGTCCGC1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000
......GCGCGAGTCGGAATATGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCTATGTACGAGTTG......1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGATCAGCTATGTACT...........2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCATGTCTGGATCAGCTATGTA.............2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCATGTCTGGATCAGC...................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGGATCAGCTATA...............1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCATGTCTGGATCAGCTATGTAC............2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGGATCAGCTATGTACG...........2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCATGTCTGGATCAGCTATGT..............2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCTGGATCAGCTATG...............2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATCAGCTATGTACGA..........1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCATGTCTGGATCAGCTATGTACGAG.........2920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGGATCAGCTATGTACGAG.........2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGGATCAGCTATG...............1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCATGTCTGGATCAGCTAT................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCATGTCTGGATCAGCTATGTACG...........2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCTGGATCAGCTATGTACGAG.........2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGATCAGCTATGTACGAG.........2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCATGTCTGGATCAGC...................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCATGTCTGGATCAGCTATGTAC............2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGGATCAGCTATGTACGAGT........2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATCAGCTATGTACGAGTTGGT....2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGGATCAGCTATGTACGAGTTT......2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCATGTCTGGATCAGCTATGT..............2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATCAGCTATGTACG...........1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCATGTCTGGATCAGCATC................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TATCCGGACCAGGTAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
droEre2
CGAGGAGCGCGAGTCGGAGTATGGCCGTGTCTACGCGGTATCCGGACCAGGTAAGCGA------TGTCCCCAT--CGTCCTCCATG---------CCC----AAGACCT----AATCTCTAATCTCTACATTT-----------------------------------------------------------ATTTACTTCCCCATATCCTTCTCCGCCATTCTTCCTTCTTCATTATCATGCTT------CT----------------------------CGGTTTTATCCTTCGGCCTACCTTCTTG---TTCCTCCTTCTTCT----------------------------ATTGCCCT------------TTTTCTGT------------------------------------TCCTCCCACTCCGTCTCCTTAT----------ATA-------------------------TTTGCTCCTGCTTTTCCT-CCCCGAAC-----------------------TACCG-CAA--C-----C----CCCCTCAGTGGTCACCGCGGAGGCCATGTCTGGATCCGCTATGTACGAGCTGGTCCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..AGGAGCGCGAGTCGGAGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
..................GTATGGCCGTGTCTACGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGGAGGCCATGTCTGGATC......................2211.0011000000
....GAGCGCGAGTCGGAGTATGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----------------------TACCG-CAA--C-----C----CCCCGT....................................................1811.0011000000
droYak3
CGAGGAGCGCGAGTCAGAGTATGGCCGTGTCTACGCGGTATCCGGACCAGGTAAGCGA------CGTCACCAG--CGTCCTTCATGCG-CTGACCCCC----AAGACCTGGCTAAT-------CTCTATATTTCC--TGC-------------------------------GTTTCTTTCTCTTGTTCTTGAATTTACACTCCTACATCCTTCTCCTTCATTCATTCTTCTTCATTATCATGCTT------CT----------------------------TGTTATTATCCATCGTCCTGATTTCTTG---TTCCTCCTTCTCCTGTTCCGCATAAACCTCCTGTTCGTCTTCATTGCCCTCACTATGATCTCTTTTTTGT------------------------------------TCCTTCCACTTCGTCTGCTAATT-----------C-------------------------TTTGCTCCTGTTTCTCCT-CCTCCAACTTTGCCCCTTCTTCTCCTCCTTCAACT--GACCCC-----A----CAACTCAGTGGTCACCGCGGAGGCCATGTCTGGATCCGCTATGTACGAGCTGGTGCGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................GAGTATGGCCGTGTCTACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGGATCCGCTATGT..............2011.00101000000000
droEug1
CGAGGAGCGCGAGTCGGAATATGGCCGTGTCTACGCGGTTTCGGGACCAGGTGAGCGA------CGTCACCAG--CGTCCTTCAGTCG-CTGACTCCC----AAGATCTAACTAAT-------CTCTTAATTTCT--CGC---TCATTTCCCG----------ACTGTTCTTCATCCTTTTTCTGCTAATT------------------TTA------------------------------CTTCTCGTTTTCTTT-----------------------------------------ATGTTGT---------------------------------------------------------CTTTATGAT---------GTCTTCGCTACTCCTTATGTTTATCCTAACGCTGTTTCTC------------TTGCTAATCCATTGTTTCATGACCCTTATCATCCCGT----------------------TC---T----------------------------------TTTATT--C-----C----CCTTTTAGTGGTCACCGCGGAGGCCATGTCTGGATCCGCAATGTACGAGTTGGTACGCSizeHit CountTotal NormTotal
No Reads
droBia1
CGAGGAGCGCGAGTCGGAATACGGCCGTGTCTACGCGGTGTCGGGACCAGGTAGGCGA------CGTCACCAG--CGTCCTTCAATCG-CTGACCCCC----GAGATTCGGCTTAT-------CTTGATGT--GCTATTTTTCC-------------------------------------------------------------------------------------------------------------------------------------ATG-------AGCTCTTTG-----TCCT---CCTCATT------CTCCTGCTCCTTTCAAATGAATA------------------C---------------------TGCTAC-TCCACCTGTAATCGTCCTGCTCCTCTTTC------------CTGCTGATCCTAC---------------TAATCCCGCTGACTTATCC-TTCTA----------CTC-ACTACT-----------------------CTCCT-CAA--------C----CCTCTTAGTGGTCACCGCGGAGGCTATGTCCGGATCTGCCATGTACGAGCTGGTGCGCSizeHit CountTotal NormTotal
No Reads
droTak1
CGAGGAGCGCGAGTCGGAATATGGCCGAGTGTACGCGGTTTCGGGACCAGGTAAGCGA------CGTCACCAG--CGTCCTTCAATCG-CTGACCCCC----CAGATTTGGCTAAT-------CTCCGAGTGCGCTTTGCTTCTCTTGTGCCT----------CCTGCTTCTCATTTTCCCCCTATTCATT---------------------------------------TTTATCGTCCTGCTTCTCATTCTCCTTTAAATTCGAATCC----------------------------------------------------------------------------------------------------------------CTTCGCTCTTCCTCCTGCTTCTTTCCTTATTTATCTTC------------CTGCTAATCCTACGTCTCATC-------------------------T-TTCTC----------CTT-TTCATC-----------------------CTCTTT--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGAGGAGCGCGAGTCCGAGTATGGACGTGTCTACGCGGTTTCGGGACCAGGTAAGTGA------CCTCACCAG--CGTCCTTCAATCG-CTGACCCCCCCCAAAGATCTGGCTAAT-------CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGAGGAGCGCGAGTCGGAGTACGGCCGTGTCTACGCGGTTTCGGGACCAGGTAAGCTA------CGTCCCCAG--CGTCCTTCAATCG-CTGACCCTC----AAGATCTGGCTAAT-------CTCTGTGC--GTTCTGTTTCTAATGCGACTCTGCTGGTCCCCCGCCTCT------------------------------------------------------------------------------------------------CC----------------------------------------------------------------------------------------------------------------CCTTGCTCT-----------------------------------------------------------------------------------------TTCTCCTG-----------CTCCTC--------------------------------CACTTCTCGTTTCCCTTTCAGTGGTCACCGCGGAGGCCATGTCGGGATCAGCTATGTACGAGTTGGTCCGCSizeHit CountTotal NormTotal
No Reads
droFic1
TTTCTAT------------------------------------------------------------------------------------------------------------TCT-------TCTAAACTTT--TC--------------------------------TTCTTGTTCCTCCGTTTATATTTATGCCTCTGTCCATCCTACT------------------------------GTTCATCAATATATAAACTCTGATTATTTCTCAATATCCGTTTAACAATCCT-----TTAT---CCTCATG------TTCATGTTCTGGTTAATTAACCA------------------C---------------------TTGAAC----------------------------------------------TTTCC---------ATA-------------------------A-TTCTTATGCTTTTCCT-TTTC--------------------------------------C-----C----CCTTTCAGTGGTCACCGCGGAGGCCATGTCGGGATCGGCTATGTACGAGTTGGTCCGCSizeHit CountTotal NormTotal
No Reads
droKik1
CGAGGAGCGCGAGTCGGAGTATGGCCGTGTCTATGCGGTCTCTGGCCCAGGTAGGCGA------CGTCACCCG--CGTCCTTCACTCG-CTGACCCCG----TAGATCGGTCTAATCC-------GGATTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG------------------------------CCGCTCT----------------SizeHit CountTotal NormTotal
No Reads
droAna3
ATCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTT------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTT-----ACCC-CTAC--------------------------------------C-----G----TTATTCAGTCGTCACTGCCGAGGCCATGTCCGGATCGGCTATGTACGAGCTGGTGCGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGAGGCCATGTCCGGAT.......................2011.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCCGAGGCCATGTCCG..........................1920.501000001
droBip1
CGAGGAGCGCGAGTCGGAATATGGACGCGTCTATGCGGTGTCTGGTCCAGGTGAGCAG------TTTTACGAA--AGTGCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TGAGGAGCGTGAGTCCAAATATGGACGTGTCTTCGCTGTTTCGGGTCCTGGTAAGTAA------CCAGACATATTCCCCCTCCAGCCG----ATATCT----AACCC---CCTAACCT-------CCAATTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................AAATATGGACGTGTCTTCGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040400000000
..............................CTTCGCTGTTTCGGGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
................AAATATGGACGTGTCTTCGCTGTTTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020200000000
..............CCAAATATGGACGTGTCTTCGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020110000000
................AAATATGGACGTGTCTTCGCTGTTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.........................CGTGTCTTCGCTGTTTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................AAATATGGACGTGTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
............GTCCAAATATGGACGTGTCTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
TGAGGAGCGTGAGTCCAAATATGGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
......................GGACGTGTCTTCGCTGTTTCGGGTCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.......................GACGTGTCTTCGCTGTTTCGGGTCCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001000
.......................GACGTGTCTTCGCTGTTTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................AAATATGGACGTGTCTTCGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
...GGAGCGTGAGTCCAAATATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................AAATATGGACGTGTCTTCGCTGTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..............CCAAATATGGACGTGTCTTCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............CCAAATATGGACGTGTCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................GTGTCTTCGCTGTTTCGGGTCCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...........................TGTCTTCGCTGTTTCGGGTCCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
....................ATGGACGTGTCTTCGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
...............................TTCGCTGTTTCGGGTCCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
.................................CGCTGTTTCGGGTCCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010100000000
droPer2
TGAGGAGCGTGAGTCCAAATATGGACGTGTCTTCGCTGTTTCGGGTCCTGGTAAGTAA------CCAGACATATTCCCCCTCCA---G-CCGATATCT----AACAC---CCTAACCT-------CCAATTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................AAATATGGACGTGTCTTCGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
..............................CTTCGCTGTTTCGGGTCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
..........................GTGTCTTCGCTGTTTCGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002
.......................GACGTGTCTTCGCTGTTTCGGGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
.........................CGTGTCTTCGCTGTTTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002002000
.........................CGTGTCTTCGCTGTTTCGGGTCCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.................................CGCTGTTTCGGGTCCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.002011000
.............TCCAAATATGGACGTGTCTTCGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..............CCAAATATGGACGTGTCTTCGCTGTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..............................CTTCGCTGTTTCGGGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..........................GTGTCTTCGCTGTTTCGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
............................GTCTTCGCTGTTTCGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
...............................TTCGCTGTTTCGGGTCCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501010000
droWil2
CGAGGAACGTGAATCCGAATATGGTCGAGTGTACGCCGTCTCCGGTCCGGGTAAGGAGGCCAGACGTCAACTT--TGTCCTTCACCTGACTGACCCTT----AACTCTTC---A---------------TTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC------------TTCCCAAT--------------------------------T-------T----TTTTTTACT-------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................CCAGACGTCAACTT--TGTCCTTCACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
droVir3
CGAGGATCGCGAATCCGAATACGGTCGCGTGTACGCTGTCTCTGGTCCGGGTAAG--A------CGTCACCTT--TGTCCTTCACCTG-CTGACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................TGTACGCTGTCTCTGGTCCGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
..................ATACGGTCGCGTGTACGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.251000000000000000010000000000000000000000000000000000000000000000
droMoj3
CT----------------------------------------------------------------------T--TGTCCTTCACCTG-CTGACCCGC----CCTATCTAC--A-T-----------------------------------------------------------------------------------------------------------------CTATATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------TTCTC----------C-TCCCCAAC--------------------------------CAC-----C----CCTTTTAGTCGTTACGGCAGAGTGTATGTCGGGCTCTGCTATGTACGAGCTGGTACGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTATGTACGAGCTGG.....1820.501100000
droGri2
CGAGGACCGCGAATCCGAATACGGGCGCGTCTACGCCGTCTCCGGTCCAGGTAAG--A------TTTCAACTT--TGTCCTTCAACTG-CTGACCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:49 PM