dsi_19362

CDS [3l_16575687_16575960_-]; exon [3l_16575687_16575960_-]; intron [3l_16575272_16575686_-]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCAGCAATGGCAGCAATTTCATCGAGGTGTGCGCGGAGTATGGCTATAAGGTGAGTCATCTATTAAGTATTCTATTCGAACTTATGACTGTTCGGGTGTAAAAACATAAAACGCATTGCTCGTAAAGGTGAAATATCACGAGCGATTTAATTTCTTTATAAAGTGTGTAGATTATGACTCGCTTAGTTTGAATGATGAAATTTAAATTAGTTGAAAATCTTCTTGTTTATTTTTTGATATTTATAGAGCA ************************************************(((((((((((((.........(((((((((........)))))))))............(((((((((((((...((((...)))))))))))))................)))))))))...))))))))..................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR618934 dsim w501 ovaries	GSM343915 embryo	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	O001 Testis	SRR553488 RT_0-2 hours eggs	M053 female body	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR1275487 Male larvae	SRR902008 ovaries
.....................................................................................GAGTGTTTGGGTGTAAAACC.................................................................................................................................................	20	3	14	5.29	74	56	0	0	18	0	0	0	0	0	0	0	0	0
.....................................................................................GAGTGTTTGGGTGTAAAA...................................................................................................................................................	18	2	17	4.06	69	48	3	0	9	0	0	0	0	5	1	2	1	0
.......................GAGGTGTGCGCGGAGTATGGCTAT...........................................................................................................................................................................................................	24	0	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0
.........................GGTGTGCGCGGGGCATGACTA............................................................................................................................................................................................................	21	3	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0
.................TTCATCGAGGTGTGCGCAGAGTATGGC..............................................................................................................................................................................................................	27	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................TCGTAAAGGTGAAATATC.................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................GTAAAAACATAAAACGCATTGCTCGT...............................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AGTGTTCGGGTGTAAAA...................................................................................................................................................	17	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................TATGAGTGTTTGGGTGTAAAAC..................................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AGTGTTCGGGTGTAA.....................................................................................................................................................	15	1	6	0.33	2	0	0	0	0	2	0	0	0	0	0	0	0	0
....................................AGTATGGCTGTAAGG.......................................................................................................................................................................................................	15	1	4	0.25	1	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................TTGAATGATGAAATTGAATTT..........................................	21	2	5	0.20	1	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................GAAATTTAGAGTAGTTGA....................................	18	2	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................GTGTTCGGGTGTAAA....................................................................................................................................................	15	1	12	0.17	2	0	0	0	0	2	0	0	0	0	0	0	0	0
.........................GGTGTGCGCGGAGTGT.................................................................................................................................................................................................................	16	1	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................GCATCGATCGTAAAGGT.........................................................................................................................	17	2	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................TGTTCGGGTGTCAAACC.................................................................................................................................................	17	2	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................TTCTTGATAAAGTGGGT..................................................................................	17	2	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................CATCGCGCGTAAAGGT.........................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................TAATAAGTGTTCTGTTCGAA..........................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1

GGTCGTTACCGTCGTTAAAGTAGCTCCACACGCGCCTCATACCGATATTCCACTCAGTAGATAATTCATAAGATAAGCTTGAATACTGACAAGCCCACATTTTTGTATTTTGCGTAACGAGCATTTCCACTTTATAGTGCTCGCTAAATTAAAGAAATATTTCACACATCTAATACTGAGCGAATCAAACTTACTACTTTAAATTTAATCAACTTTTAGAAGAACAAATAAAAAACTATAAATATCTCGT ************************************************(((((((((((((.........(((((((((........)))))))))............(((((((((((((...((((...)))))))))))))................)))))))))...))))))))..................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
........................................................................................................................................................................TCGAATACTGAGCGAATGA...............................................................	19	2	1	1.00	1	1	0
........TCGTCGTTAAAGTAGCT.................................................................................................................................................................................................................................	17	1	6	0.17	1	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:16575487-16575736 -	dsi_19362	CCAGCA---------------AT---GGCAGCAATTTCATCGAGGTGTGCGCGGAGTATGGCTATAAGGTGAGTCATC-----------------------------------------------------T-ATTA-A-G----------------TAT------------------------------------------------------------TCTATTCGAACTTATGACTGTTCGGGTGTA----------------------------AAAACATAAAACGCATTGCTCGTAAAGGTGAAAT-ATCACGAGCGATTTA------------------------------------------------ATTTCTTTATAA----AGTGTGTAG-------ATT------ATG----ACTCGCT-TAGTTTGAATGATGAAATTTAAATTAGTTGAAAATCTTCTTG---T-----TTATTTTTTGAT--------------A--TTT-------------------------------------------------------ATAG--AGCA
droSec2	scaffold_0:9053845-9054084 -		CCAGCA---------------AT---GGCAGCAATTTCATCGAGGTGTGCGCAGAGTATGGCTATAAGGTGAGTCATC-----------------------------------------------------T-AT------------------------------------------------------------------------------------------TAGAACTTATGA--GACCGGGTGTA----------------------------TAAACATAAAACGCATTGCTCGTAAAGGTGAAAT-ATCACGTTTAATTTA------------------------------------------------ATTTTATTATAA-TTAAGTCTGTAG-------ATT------ATG----ACTCGCA-TAGTTCGGATGATGAAATTTAAATTAGTTGAAAATCTTCTTG---T----TTATTTTTTTGAT--------------A--TTT-------------------------------------------------------ATAG--AACA
dm3	chr3L:16992786-16992888 -		CCAGCA---------------AT---GGTAGCAATTTCATCGAGGTGTGCGCAGAGTACGGCTATAAGGTGAGTCATC-----------------------------------------------------T-ATTA-A-G----------------TAA------------------------------------------------------------TCTATTCGAACTTATGACCGGTCGGGTGTA----------------------------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4784:16849955-16850222 +		CCAACA---------------AT---GGCAGCAATTTCATCGAGGTGTGCGCAGAGTATGGCTATAAGGTGAGTCATC-------------------------------------------------------ATTG-A-G----------------TAA------------------------------------------------------------TCTATACAAACTTATGA----CCGGGTGTA----------------------------ATAGCACATTATGTACTGGTCGTAAAAGTGAAAT-ATCACGACCGTTTTA------------------------------------------------ATTTCATCATAA-TTCATTCTGCAAATGAAAAGCT------ATG----ACTCGCT-TAGCTTGGATGATCAAATTTAAATCACTTAAAAAT-----TG---CAAAATTAATTTTTTCAT--------------A--TTA---------------------------------------ATAG-----AAATACCCTTTTATACA
droYak3	3L:17081344-17081532 +		CCAACA---------------AT---GGCAGCAATTTCATCGAGGTGTGCGCGGAGTATGGCTATAAGGTGAGTCATC-----------------------------------------------------T-ATTA-A-G----------------AAA------------------------------------------------------------TCTATTCAAACTTATGA----CCAGGTGTA----------------------------AAACCAAAATATGCACTGCTCGTAAAAGTGAAGT-ATCACGACCGTTTTA------------------------------------------------ATTTCATCATAA-TTCGTTCTGCAAATTGTTAACT------ATG---------------------------------------------------------------------------------------------------------------------------------------------------------ACTCACT
droEug1	scf7180000409758:288666-288869 +		TTAACT---------------AT---TA-------------------------------------------AGTAGCCTA-------C-------------------------------------------C-AACA-AAT----------------TTAGACAAACAGACATTACGGTTATGTAAAACAAAGGAAATGCATTTCTAGTATAGCTGGCAATCAATTAGAGCTGTC-------CGG----------------------------------------AACATGCTTAGCTCACAATGG-----------------------------------------------------------------CTCACA----------------------------------------------------------------------------------------------------------------------A-ATGTTGTAGTACCCTTTACTCGTA--G-----AGTAAAAGGGTATATTATATTTG--TTGA-----AAAGTATATAA--CACG
droBia1	scf7180000297212:49074-49280 +		TGTGGC---------------TT---TGTAG--------------------------------------GTATCAATA---------------------------TAATA--GGCATTT------TAT----------------------TCCTTACTTG------------------------------------------------------------AATGCCCAAAAACA---TAAAGCCGTTTTAAATAAAAGAGAAGCAGTTATAGACTTTTTAAAAGTATA----------------------TT-A---------------TAA----------------------CTTCAGTGATA-----------TTATAAAAAAAA----AGTGTTTAA-------ATA------TTT----TT--TTT-------------------------------------------------------------GATTTCGATTTTTATATCCT--------------TGC--A--GAGAGTATAATGATTTTA------------------------GTCA
droTak1	scf7180000415352:365986-366243 +		CCAGCA---------------AT---GGCAGCAACTTCATCGAGGTGTGCGCCGAGTATGGTTATAAGGTGAGTCATC-----------------------------------------------------C-GATG-ATT----------------TAA------------------------------------------------------------AATATTCCAACTTCTG---GGGTGGGTATT----------------------------GAAAATTATAGTGCACTTTTCGTAGAACTTAAAT-ATCAGTAGTGACT-----------------------------------------------------TCGCCGTAAAACCGATATGTGCATGTAAATTTCTGGTTATGCATAACCCATATCGTTTT--------TACATGTAATTTACCTAGCACCATATCCAGTT-----AA------------------------------------------------------------------A--ATTG-----ATATTACATAA--TGTA
droEle1	scf7180000491255:3430930-3431135 -		CCACCA---------------AT---GGCAGCAACTTCATCGAGGTGTGCGCGGAGTATGGCTATAAGGTGAGTCATC-----------------------------------------------------T-ACCT-T-A----------------TAT------------------------------------------------------------TTTATTTGCTCTTGTG------GGGGTTTT--------------------TTA-TTCTTAAAATTATT--------------------GTAT-ATCAGGAGGGATCTAA---------------------------------------TTTAATTTATTT----------------------------------------------------------AC-TGATGAAAT--------------------------------------------CATCGATTTTTAAACTGC--------------TTT--TATAAGCATTTAAAAATTTTA--GGC--------------TGG--ATCA
droRho1	scf7180000779902:72105-72250 +		CCACCA---------------AT---GGCAGCAACTTCATCGAGGTGTGCGCGGAGTTTGGCTATAAGGTGAGTCATC-----------------------------------------------------T-AACC-T-A----------------TAA------------------------------------------------------------TACACTTGCTCTA----TTGTGTGGGTGAG----------------------------CAATAAGAAAGTGCATTGTTCGTATAACTGT----ATTGGAAGTGATCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT
droFic1	scf7180000454113:3611908-3612045 +		CCACCA---------------AC---GGCAGCAACTTCATCGATGTGTGCGCGGAGTATGGCTATAAGGTGAGTCACT--------------------------------------------------------------------------------AA------------------------------------------------------------CTTATCCGATTTTA---CTGCGTGGGTGTA----------------------------CATATGAATAATGTA------GTAACA--GAAGT-GTCAGAAGTA-CTTA------------------------------------------------ATTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCA
droKik1	scf7180000302386:294249-294463 -		CAAAAT---------------AT---AA---------------------------------ATATTAAATGTGTCAAA-----------------------------------------------------T-AATAGATATATTTATAAGC-----------------GATAAATTGC---------------------------------------------------------------------TA----------------------------GGGAAGTAAAATAAGTTACTATTT-AAACTATAT-TTCGAAATAAATAAT------------------------------------------------GGATTTATGAAA----AGTATATAA-------TTT------TTA----CT--TTT-AATGTTGGTTAGGAAC--------TAAAT----------------------------------G-ATATTATTATACCCT--------------TGC------AGGGTACTATAATTTCA--GTCA-----GAAGTTTGCAA--CGCA
droAna3	scaffold_12422:41118-41264 +		TGCAAT---------------AATATAAAAGCATCATCCTTAAAA------------------------------------------TTTAAAAATT---------------------------------------------------------------------------------------------------------------------------------CAAGTTTA--------------------------------------------TAAAGAAATT----------------------ATG----------------TAA----------------------------------------------------------------------------ATT------CAG----GTCCAGT-CACTTTCCA---------------------------------------------------GATACAAATTTTTATACCCT--------------TGC--A--GAGGGTATTATAATTTTG--GTCA-----AAAGTGTGCAA--CGCA
droBip1	scf7180000395865:1581-1742 -		CTTAAG---------------AA---TGTTTC---------------------------------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGA----------------------------GAAGAATAAGATCTCTTATCAGTATAGGCGAAAT-TTTTTAATCCATTTT------------------------------------------------GAAGCTATTTGA----AGTGTGCAG-------ATT------TCA----CTGTGAG-TATTTT--------TATTTTTAACAAATCCAAAACTTTATTCATCT-----TAATTTGTTGGT--------------A--GTG-------------------------------------------------------------ATAG
dp5	Unknown_singleton_3484:581-690 +		TCTAAT---------------TT---AT---------------------------------TCCTAAATTGCGTTGCT-----------------------------------------------------CTACTA-AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTATACCCGATACTCAAAATT-----AGTATTGGGGTTTATTATATTTGTGGTAAAAGTGGATGTGTGTAACGTCCA
droPer2	scaffold_295:2784-2948 -		ATTTGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TATCCAA--AGCGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--AAGGACTACTTT------------------------------------------------ATTTCCAAAT-------------------------------------------------------------------------------------------------------------G-ATGTTTTTATACCCGATACTCAAAATG-----AGTATTGGGGTATATTAGATTTGTGGTGAAAGTGGATGTGTGTAACGTCCA
droWil2	scf2_1100000004511:10140174-10140328 -		TAAAAACATATTTTGC-----TT---AATAA------------------------------CTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT-ATTTTATAAGATCTA------------------------------------------------TCCTCTCTGAAA----AATGTGT---------ACT------ACG----CCTTTGT-CATTTTGAATGGCGAC-------------------------------------------------ATATTTTTATACCCT--------------TGC--AAAAAGGGTATATTAATTTTG--GTCA-----AAAGTGTGCAACGCATA
droVir3	scaffold_12934:39081-39283 +		TTAAAT---------------AT---TTCATTAGAAGC---TAATGATGTGACGTAAATAAATAAAAAA------CCCTCCTAGAAAAATTAAAAATAAAATATATGAAA--ATCAAATTATTTTTGTGACC-TGTG-ATT----------------TAA------------------------------------------------------------GAAATTAAAATTGCT-------TGGAT--------------------------------------------------------------------TAAAAGTGCGTGAA-------------------------------------------TTATATTTC-----------------------------------------------------------------------------------------------------------------------TTTATATAAGA--TATTCATTTTG-----TGAAT----------------TA--ATG------AAAAA--GAAAGATGCA
droMoj3	scaffold_6500:23744144-23744297 +		AGTCAC----------AGATTA-----------------------------------------------------A---------------------------TATTCAAACATGTTTTTGTTTTTGT----------------------GC-------------------------------------------------------------------------------------------------------------------------------------------CATTGATTGAAAACGCATAAA-AACAAGGGCGGTTAT------------------------------------------------TTTTC-----------------------------------------------------------------------------------------------------------------------TTTTTATACCCTGAACCCATTTTCAATGGGAAATCAGGGTATAATGGTTTTG--TTGA-----AATGTATGTAACAGGCA
droGri2	scaffold_14624:1700295-1700450 -		AAAGTA---------------CT---GCTCT--------------------------------TCAAA-------------------CTGAGAGATC----------------------------------T-GGGC-A-A----------------TAT------------------------------------------------------------TAAAATCTATATA----TTAT-----------------------------------------------------------------------G----------------TATACTTAATCGGAGTATTGCTTCTCTTGAGTGAAATACTTAATCATAATTC-----------------------------------------------------------------------------------------------------------------------TTTTTATGCCCTGAATCCATTAAA-----AGTAT----------------TT--AAGA-----AGGGC--GTTT--AACA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CCAGCA---------------AT---GGCAGCAATTTCATCGAGGTGTGCGCGGAGTATGGCTATAAGGTGAGTCATC-----------------------------------------------------T-ATTA-A-G----------------TAT------------------------------------------------------------TCTATTCGAACTTATGACTGTTCGGGTGTA----------------------------AAAACATAAAACGCATTGCTCGTAAAGGTGAAAT-ATCACGAGCGATTTA------------------------------------------------ATTTCTTTATAA----AGTGTGTAG-------ATT------ATG----ACTCGCT-TAGTTTGAATGATGAAATTTAAATTAGTTGAAAATCTTCTTG---T-----TTATTTTTTGAT--------------A--TTT-------------------------------------------------------ATAG--AGCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................GAGGTGTGCGCGGAGTATGGCTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TCGTAAAGGTGAAAT-ATC........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GTA----------------------------AAAACATAAAACGCATTGCTCGT.......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CCAGCA---------------AT---GGCAGCAATTTCATCGAGGTGTGCGCAGAGTATGGCTATAAGGTGAGTCATC-----------------------------------------------------T-AT------------------------------------------------------------------------------------------TAGAACTTATGA--GACCGGGTGTA----------------------------TAAACATAAAACGCATTGCTCGTAAAGGTGAAAT-ATCACGTTTAATTTA------------------------------------------------ATTTTATTATAA-TTAAGTCTGTAG-------ATT------ATG----ACTCGCA-TAGTTCGGATGATGAAATTTAAATTAGTTGAAAATCTTCTTG---T----TTATTTTTTTGAT--------------A--TTT-------------------------------------------------------ATAG--AACA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................C-----------------------------------------------------T-AT------------------------------------------------------------------------------------------TAGAACTTATGA--GAC..................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
................................................GCGCAGAGTATGGCTATAAGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
............................................GTGTGCGCAGAGTATGGCTATAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0

dm3

CCAGCA---------------AT---GGTAGCAATTTCATCGAGGTGTGCGCAGAGTACGGCTATAAGGTGAGTCATC-----------------------------------------------------T-ATTA-A-G----------------TAA------------------------------------------------------------TCTATTCGAACTTATGACCGGTCGGGTGTA----------------------------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................TTCATCGAGGTGTGCGCAGAGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................ATCGAGGTGTGCGCAGAGTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...................................TTCATCGAGGTGTGCGCAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GAACTTATGACCGGTCGGGT.............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AATTTCATCGAGGTGTGCGCAGAGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GCAATTTCATCGAGGTGTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................CGAGGTGTGCGCAGAGTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GCAATTTCATCGAGGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................ATCGAGGTGTGCGCAGAGTACGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................CATCGAGGTGTGCGCAGAGTACGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................ATCGAGGTGTGCGCAGAGTACGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droEre2

CCAACA---------------AT---GGCAGCAATTTCATCGAGGTGTGCGCAGAGTATGGCTATAAGGTGAGTCATC-------------------------------------------------------ATTG-A-G----------------TAA------------------------------------------------------------TCTATACAAACTTATGA----CCGGGTGTA----------------------------ATAGCACATTATGTACTGGTCGTAAAAGTGAAAT-ATCACGACCGTTTTA------------------------------------------------ATTTCATCATAA-TTCATTCTGCAAATGAAAAGCT------ATG----ACTCGCT-TAGCTTGGATGATCAAATTTAAATCACTTAAAAAT-----TG---CAAAATTAATTTTTTCAT--------------A--TTA---------------------------------------ATAG-----AAATACCCTTTTATACA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................TCGAGGTGTGCGCAGAGTATGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
................................AATTTCATCGAGGTGTGCGCAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
................................AATTTCATCGAGGTGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.............................AGCAATTTCATCGAGGTGTGCGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0

droYak3

CCAACA---------------AT---GGCAGCAATTTCATCGAGGTGTGCGCGGAGTATGGCTATAAGGTGAGTCATC-----------------------------------------------------T-ATTA-A-G----------------AAA------------------------------------------------------------TCTATTCAAACTTATGA----CCAGGTGTA----------------------------AAACCAAAATATGCACTGCTCGTAAAAGTGAAGT-ATCACGACCGTTTTA------------------------------------------------ATTTCATCATAA-TTCGTTCTGCAAATTGTTAACT------ATG---------------------------------------------------------------------------------------------------------------------------------------------------------ACTCACT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................TTCATCGAGGTGTGCGCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................GCAATTTCATCGAGGTGTGCGCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................AGGTGTGCGCGGAGTATGGCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TTAACT---------------AT---TA-------------------------------------------AGTAGCCTA-------C-------------------------------------------C-AACA-AAT----------------TTAGACAAACAGACATTACGGTTATGTAAAACAAAGGAAATGCATTTCTAGTATAGCTGGCAATCAATTAGAGCTGTC-------CGG----------------------------------------AACATGCTTAGCTCACAATGG-----------------------------------------------------------------CTCACA----------------------------------------------------------------------------------------------------------------------A-ATGTTGTAGTACCCTTTACTCGTA--G-----AGTAAAAGGGTATATTATATTTG--TTGA-----AAAGTATATAA--CACG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGTGGC---------------TT---TGTAG--------------------------------------GTATCAATA---------------------------TAATA--GGCATTT------TAT----------------------TCCTTACTTG------------------------------------------------------------AATGCCCAAAAACA---TAAAGCCGTTTTAAATAAAAGAGAAGCAGTTATAGACTTTTTAAAAGTATA----------------------TT-A---------------TAA----------------------CTTCAGTGATA-----------TTATAAAAAAAA----AGTGTTTAA-------ATA------TTT----TT--TTT-------------------------------------------------------------GATTTCGATTTTTATATCCT--------------TGC--A--GAGAGTATAATGATTTTA------------------------GTCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCAGCA---------------AT---GGCAGCAACTTCATCGAGGTGTGCGCCGAGTATGGTTATAAGGTGAGTCATC-----------------------------------------------------C-GATG-ATT----------------TAA------------------------------------------------------------AATATTCCAACTTCTG---GGGTGGGTATT----------------------------GAAAATTATAGTGCACTTTTCGTAGAACTTAAAT-ATCAGTAGTGACT-----------------------------------------------------TCGCCGTAAAACCGATATGTGCATGTAAATTTCTGGTTATGCATAACCCATATCGTTTT--------TACATGTAATTTACCTAGCACCATATCCAGTT-----AA------------------------------------------------------------------A--ATTG-----ATATTACATAA--TGTA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCACCA---------------AT---GGCAGCAACTTCATCGAGGTGTGCGCGGAGTATGGCTATAAGGTGAGTCATC-----------------------------------------------------T-ACCT-T-A----------------TAT------------------------------------------------------------TTTATTTGCTCTTGTG------GGGGTTTT--------------------TTA-TTCTTAAAATTATT--------------------GTAT-ATCAGGAGGGATCTAA---------------------------------------TTTAATTTATTT----------------------------------------------------------AC-TGATGAAAT--------------------------------------------CATCGATTTTTAAACTGC--------------TTT--TATAAGCATTTAAAAATTTTA--GGC--------------TGG--ATCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCACCA---------------AT---GGCAGCAACTTCATCGAGGTGTGCGCGGAGTTTGGCTATAAGGTGAGTCATC-----------------------------------------------------T-AACC-T-A----------------TAA------------------------------------------------------------TACACTTGCTCTA----TTGTGTGGGTGAG----------------------------CAATAAGAAAGTGCATTGTTCGTATAACTGT----ATTGGAAGTGATCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCACCA---------------AC---GGCAGCAACTTCATCGATGTGTGCGCGGAGTATGGCTATAAGGTGAGTCACT--------------------------------------------------------------------------------AA------------------------------------------------------------CTTATCCGATTTTA---CTGCGTGGGTGTA----------------------------CATATGAATAATGTA------GTAACA--GAAGT-GTCAGAAGTA-CTTA------------------------------------------------ATTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAAAAT---------------AT---AA---------------------------------ATATTAAATGTGTCAAA-----------------------------------------------------T-AATAGATATATTTATAAGC-----------------GATAAATTGC---------------------------------------------------------------------TA----------------------------GGGAAGTAAAATAAGTTACTATTT-AAACTATAT-TTCGAAATAAATAAT------------------------------------------------GGATTTATGAAA----AGTATATAA-------TTT------TTA----CT--TTT-AATGTTGGTTAGGAAC--------TAAAT----------------------------------G-ATATTATTATACCCT--------------TGC------AGGGTACTATAATTTCA--GTCA-----GAAGTTTGCAA--CGCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGCAAT---------------AATATAAAAGCATCATCCTTAAAA------------------------------------------TTTAAAAATT---------------------------------------------------------------------------------------------------------------------------------CAAGTTTA--------------------------------------------TAAAGAAATT----------------------ATG----------------TAA----------------------------------------------------------------------------ATT------CAG----GTCCAGT-CACTTTCCA---------------------------------------------------GATACAAATTTTTATACCCT--------------TGC--A--GAGGGTATTATAATTTTG--GTCA-----AAAGTGTGCAA--CGCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--A--GAGGGTATTATAATTTTG--GTCA-----AA...............	26	20	0.05	1	0	1	0	0	0	0

droBip1

CTTAAG---------------AA---TGTTTC---------------------------------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGA----------------------------GAAGAATAAGATCTCTTATCAGTATAGGCGAAAT-TTTTTAATCCATTTT------------------------------------------------GAAGCTATTTGA----AGTGTGCAG-------ATT------TCA----CTGTGAG-TATTTT--------TATTTTTAACAAATCCAAAACTTTATTCATCT-----TAATTTGTTGGT--------------A--GTG-------------------------------------------------------------ATAG	Size	Hit Count	Total Norm	Total
No Reads

dp5

TCTAAT---------------TT---AT---------------------------------TCCTAAATTGCGTTGCT-----------------------------------------------------CTACTA-AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTATACCCGATACTCAAAATT-----AGTATTGGGGTTTATTATATTTGTGGTAAAAGTGGATGTGTGTAACGTCCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGT..........	20	20	2.35	47	0	47	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTGTAA......	26	20	1.65	33	0	0	0	0	0	0	0	0	33	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCAAAATT-----AGTATTGGGG.........................................	24	8	1.13	9	0	9	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTG.........	21	20	0.55	11	0	0	0	0	0	0	11	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGTGTA.......	24	20	0.50	10	0	5	0	0	0	0	0	0	5	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATGTGTG.........	24	20	0.50	10	0	0	0	0	0	0	0	0	10	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAAAAGTGGATGTGTGT........	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGATGTGTGTAACGTCC.	21	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAAAGTGGATGTGTGTA.......	20	20	0.25	5	0	0	0	0	0	0	5	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCAAAATT-----AGTATTGGGGT........................................	25	8	0.25	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTGT........	22	20	0.20	4	0	0	0	0	0	0	0	0	4	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTCAAAATT-----AGTATTGGGGT........................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCAAAATT-----AGTATTG............................................	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGG................	16	20	0.10	2	0	0	0	0	0	0	0	2	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCAAAATT-----AGTATTGGGGC........................................	25	11	0.09	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCGATACTCAAAATT-----AGT................................................	22	18	0.06	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATACCCGATACTCAAAA..........................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTGTA.......	23	20	0.05	1	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATGTGTGTAACG....	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGAT..............	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGTC.........	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

ATTTGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TATCCAA--AGCGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--AAGGACTACTTT------------------------------------------------ATTTCCAAAT-------------------------------------------------------------------------------------------------------------G-ATGTTTTTATACCCGATACTCAAAATG-----AGTATTGGGGTATATTAGATTTGTGGTGAAAGTGGATGTGTGTAACGTCCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	7	9.29	65	0	65	0	0	0	0
...TGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	4.71	33	0	29	4	0	0	0
..TTGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	7	2.00	14	0	14	0	0	0	0
......................................................................................................................................................................................................................................................................................................TGTCCTTATCAGTTAAAT-A--AAGGA...................................................................................................................................................................................................................................................................	24	12	1.83	22	0	22	0	0	0	0
........................................................................................................................................................................................................................................................................................................TCCTTATCAGTTAAAT-A--AAGGACTACTT.............................................................................................................................................................................................................................................................	28	16	1.81	29	0	29	0	0	0	0
....................................................................................................................GTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-...........................................................................................................................................................................................................................................................................	24	13	1.08	14	0	14	0	0	0	0
.....................CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	7	0.86	6	0	6	0	0	0	0
...TGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	7	0.86	6	0	6	0	0	0	0
.....................CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.86	6	0	6	0	0	0	0
...............T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.86	6	0	6	0	0	0	0
......................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--AAGGA...................................................................................................................................................................................................................................................................	28	12	0.67	8	0	8	0	0	0	0
......................A---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	16	0.50	8	0	8	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TTGTCCTTATCAGTTAAAT-A--AAGGA...................................................................................................................................................................................................................................................................	25	12	0.50	6	0	6	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GTCCTTATCAGTTAAAT-A--AAGGA...................................................................................................................................................................................................................................................................	23	16	0.50	8	0	8	0	0	0	0
...TGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	7	0.43	3	0	3	0	0	0	0
...TGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.43	3	0	3	0	0	0	0
.TTTGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	7	0.43	3	0	3	0	0	0	0
...TGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	7	0.43	3	0	3	0	0	0	0
.....................CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TATCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.43	3	0	3	0	0	0	0
.....................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--AA......................................................................................................................................................................................................................................................................	26	13	0.38	5	0	3	2	0	0	0
.....................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--AAGG....................................................................................................................................................................................................................................................................	28	13	0.38	5	0	4	1	0	0	0
........................................................................................................................................................................................................................................................................................................TCCTTATCAGTTAAAT-A--AAGGACTACT..............................................................................................................................................................................................................................................................	27	16	0.38	6	0	6	0	0	0	0
.....................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--AAGGA...................................................................................................................................................................................................................................................................	29	12	0.33	4	0	4	0	0	0	0
....................................................................................................................GTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--........................................................................................................................................................................................................................................................................	25	13	0.31	4	0	4	0	0	0	0
.....................CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TATCCAA--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	7	0.29	2	0	2	0	0	0	0
..TTGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	7	0.29	2	0	2	0	0	0	0
...TGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	7	0.29	2	0	2	0	0	0	0
...TGG---------T-----CA---CATAA------------------------------CTTTTAG-GTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	8	0.25	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................TGTCCTTATCAGTTAAAT-A--AAGGAT..................................................................................................................................................................................................................................................................	25	12	0.25	3	0	3	0	0	0	0
......................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--AAGG....................................................................................................................................................................................................................................................................	27	13	0.23	3	0	3	0	0	0	0
.....................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-...........................................................................................................................................................................................................................................................................	23	13	0.23	3	0	3	0	0	0	0
........................................................................................................................................................................................................................................................................................................TCCTTATCAGTTAAAT-A--AAGGATC.................................................................................................................................................................................................................................................................	24	16	0.19	3	0	3	0	0	0	0
......................................................................................................................................................................................................................................................................................................TGTCCTTATCAGTTAAAT-A--AAGGATC.................................................................................................................................................................................................................................................................	26	12	0.17	2	0	2	0	0	0	0
.....................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGT.................................................................................................................................................................................................................................................................................	18	13	0.15	2	0	0	2	0	0	0
....................................................................................................................GTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAA.............................................................................................................................................................................................................................................................................	23	13	0.15	2	0	2	0	0	0	0
.....................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--A.......................................................................................................................................................................................................................................................................	25	13	0.15	2	0	1	1	0	0	0
....................................................................................................................GTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--AA......................................................................................................................................................................................................................................................................	27	13	0.15	2	0	2	0	0	0	0
....GG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0
...............T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0
...TGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAT---------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0	0
..TTGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0	0
ATTTGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0
..TTGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	7	0.14	1	0	1	0	0	0	0
....GG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0	0
..TTGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0	0
...............T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0
.TTTGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	7	0.14	1	0	1	0	0	0	0
.TTTGG---------T-----CA---CATAA------------------------------CTTTTAG-GTAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0
.....................CA---CATAA------------------------------CTTTTAG-GTAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	1	0	0	0	0
.....................CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TATCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0	0
.....................CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0
.....................CA---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0	0
.....................CA---CATAA------------------------------CTTTTAG-GTAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0
................................................................TTAG-GTAAAAA---------------------------TATCCAA--AGCGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGT..............................................................................................................................................................................................................................................................................................	28	15	0.13	2	0	2	0	0	0	0
.................................................................TAG-GTAAAAA---------------------------TATCCAA--AGCGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------.................................................................................................................................................................................................................................................................................................	24	16	0.13	2	0	2	0	0	0	0
...TGG---------T-----CA---CATAA------------------------------CTTTTAG-GA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	8	0.13	1	0	1	0	0	0	0
...TGG---------T-----CA---CATAA------------------------------CTTTTAG-G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	8	0.13	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................TCCTTATCAGTTAAAT-A--AAGGAC..................................................................................................................................................................................................................................................................	23	16	0.13	2	0	2	0	0	0	0
.......................................................................................................TATCCAA--AGCGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGT...........................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................TGTCCTTATCAGTTAAAT-A--AAGGAA..................................................................................................................................................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................CGTTGTCCTTATCAGTTAAAT-A--AAGGA...................................................................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0	0
.........................................................................................................TCCAA--AGCGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAA..................................................................................................................................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0	0
....................................................................................................................GTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAG-T--........................................................................................................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0	0
......................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTA...............................................................................................................................................................................................................................................................................	19	13	0.08	1	0	1	0	0	0	0
....................................................................................................................GTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--A.......................................................................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0	0
.....................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--AAA.....................................................................................................................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0	0
...........................................................................................................CAA--AGCGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAG..................................................................................................................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0	0
.........................................................................................................TCCAA--AGCGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAG..................................................................................................................................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0	0
.........................................................................................................TCCAA--AGCGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTT.......................................................................................................................................................................................................................................................................................	22	13	0.08	1	0	1	0	0	0	0
...........................................................................................................CAA--AGCGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCA...................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0	0
....................................................................................................................GTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGT.................................................................................................................................................................................................................................................................................	19	13	0.08	1	0	1	0	0	0	0
....................................................................................................................GTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTA...............................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0	0
......................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--AA......................................................................................................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0	0
....................................................................................................................GTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAC-...........................................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0	0
...................................................................................................................GGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAA.............................................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0	0
.....................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--AAGA....................................................................................................................................................................................................................................................................	28	13	0.08	1	0	1	0	0	0	0
.....................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAA..............................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0	0
.....................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTCCTTATCAGTTAAAT-A--........................................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................TATCAGTTAAAT-A--AAGGACTACTTT------------------------------------------------AA..........................................................................................................................................................................................................	27	15	0.07	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................A--AAGGACTACTTT------------------------------------------------ATTTCCAAAT-------------------------------------------------------------------------------------------------------------G-A..................................................................................	25	15	0.07	1	0	1	0	0	0	0
................................................................TTAG-GTAAAAA---------------------------TATCCAA--AGCGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------.................................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TCAGTTAAAT-A--AAGGACTACTTT------------------------------------------------ATT.........................................................................................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0
..........................CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	16	0.06	1	0	1	0	0	0	0
......................A---CATAA------------------------------CTTTTAG-GTAAAAA---------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................TATCAGTTAAAT-A--AAGGAT..................................................................................................................................................................................................................................................................	19	16	0.06	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................TCCTTATCAGTTAAAT-A--AAGGACTAC...............................................................................................................................................................................................................................................................	26	16	0.06	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................TATCAGTTAAAT-A--AAGGACTACTT.............................................................................................................................................................................................................................................................	24	16	0.06	1	0	1	0	0	0	0
..........................CATAA------------------------------CTTTTAG-GTAAAAA---------------------------TA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................TCCTTATCAGTTAAAT-A--AAGGACTACTTT------------------------------------------------............................................................................................................................................................................................................	29	16	0.06	1	0	1	0	0	0	0
.................................................................TAG-GTAAAAA---------------------------TATCCAA--AGCGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGT..............................................................................................................................................................................................................................................................................................	27	16	0.06	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CCTTATCAGTTAAAT-A--AAGGACTACTT.............................................................................................................................................................................................................................................................	27	16	0.06	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GTCCTTATCAGTTAAAT-A--AAGGATA.................................................................................................................................................................................................................................................................	25	16	0.06	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................TCCTTATCAGTTAAAT-A--AAGGA...................................................................................................................................................................................................................................................................	22	16	0.06	1	0	1	0	0	0	0

droWil2

TAAAAACATATTTTGC-----TT---AATAA------------------------------CTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT-ATTTTATAAGATCTA------------------------------------------------TCCTCTCTGAAA----AATGTGT---------ACT------ACG----CCTTTGT-CATTTTGAATGGCGAC-------------------------------------------------ATATTTTTATACCCT--------------TGC--AAAAAGGGTATATTAATTTTG--GTCA-----AAAGTGTGCAACGCATA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAATTTTG--GTCA-----AAAGTGTGC........	25	20	0.15	3	0	0	0	3	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAATTTTG--GTCA-----AAAGTGTGCAACG....	29	20	0.10	2	0	0	2	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC--AAAAAGGGTATATTAATT...............................	21	20	0.05	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTG--GTCA-----AAAGTGTGCAACG....	25	20	0.05	1	0	0	0	0	1

droVir3

TTAAAT---------------AT---TTCATTAGAAGC---TAATGATGTGACGTAAATAAATAAAAAA------CCCTCCTAGAAAAATTAAAAATAAAATATATGAAA--ATCAAATTATTTTTGTGACC-TGTG-ATT----------------TAA------------------------------------------------------------GAAATTAAAATTGCT-------TGGAT--------------------------------------------------------------------TAAAAGTGCGTGAA-------------------------------------------TTATATTTC-----------------------------------------------------------------------------------------------------------------------TTTATATAAGA--TATTCATTTTG-----TGAAT----------------TA--ATG------AAAAA--GAAAGATGCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................TAAAATTGCT-------TGGAT--------------------------------------------------------------------TAA......................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CCTCCTAGAAAAATTAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AAT---------------AT---TTCATTAGAAGC---TA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.30	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AAAT---------------AT---TTCATTAGAAGC---TAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.30	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AAAT---------------AT---TTCATTAGAAGC---TA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	10	0.30	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TAAAT---------------AT---TTCATTAGAAGC---TA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TAAAT---------------AT---TTCATTAGAAGC---TAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AT---------------AT---TTCATTAGAAGC---TAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GAAAAATTAAAAATAAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AAT---------------AT---TTCATTAGAAGC---TAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TAAAT---------------AT---TTCATTAGAAGC---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AAAT---------------AT---TTCATTAGAAGA---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AAAT---------------AT---TTCATTAGAAGC---A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGTCAC----------AGATTA-----------------------------------------------------A---------------------------TATTCAAACATGTTTTTGTTTTTGT----------------------GC-------------------------------------------------------------------------------------------------------------------------------------------CATTGATTGAAAACGCATAAA-AACAAGGGCGGTTAT------------------------------------------------TTTTC-----------------------------------------------------------------------------------------------------------------------TTTTTATACCCTGAACCCATTTTCAATGGGAAATCAGGGTATAATGGTTTTG--TTGA-----AATGTATGTAACAGGCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTATAATGGTTTTG--TTG.......................	21	20	1.25	25	25	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-----AATGTATGTAACAGGCA	20	20	0.20	4	4	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGTTTTG--TTGA-----AATGT............	21	20	0.15	3	0	0	0	0	0	3
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATGGGAAATCAGGGTATAATGG.................................	26	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG--TTGA-----AATGTATGTAACAGGC.	23	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------------------------------------------------------------------------------------TTTTTATACCCTGAACCCAT............................................................	21	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------------------------------------------------------------------------------------------------------TTTTTATACCCTGAACCCATT...........................................................	23	20	0.05	1	0	0	0	0	1	0

droGri2

AAAGTA---------------CT---GCTCT--------------------------------TCAAA-------------------CTGAGAGATC----------------------------------T-GGGC-A-A----------------TAT------------------------------------------------------------TAAAATCTATATA----TTAT-----------------------------------------------------------------------G----------------TATACTTAATCGGAGTATTGCTTCTCTTGAGTGAAATACTTAATCATAATTC-----------------------------------------------------------------------------------------------------------------------TTTTTATGCCCTGAATCCATTAAA-----AGTAT----------------TT--AAGA-----AGGGC--GTTT--AACA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_19362

3l:16575537-16575686 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-31.9	-31.7	-31.7