ID:

dsi_19357

 Coordinate:

3l:6994349-6994565 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.1 -25.0 -24.8

Flybase annnotation

five_prime_UTR [3l_6994279_6994984_+]; exon [3l_6994279_6994984_+]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

#############################################################################################################################################################################################################################################################################################################################
CGCGTTCGCTTGGCCAGCGCGCTCGTATCCGTCGCTTTCTTCGCCTATCGGTGTGTGCGTGCGCCTGCCTACGTGTGTGCCTGTGCCTGTGCATGCGAGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAGAAATCAGGCAGAGTGGAACAAGGCATTGTGGCTGAAACAACAGTCGGCGGCAGTAACAGTCGTCACTAAAAAACAACAAAATATATATGTATTAATAATAGTACATACAAAACATATCTTTTGAGATATACACGAAATGCGAAAATTTGCATAAAAAGCAATGCGCTGGCGCGGCAACA
********************************************************************************((.((((((.........((((...((((((((.....)).))))))...))))........)))))).))....((((....))))(((((......)))))...*********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
........................................................................................................................................................................GCTGAAACAACAGTCGGC................................................................................................................................... 18 0 1 4.00 4 0 2 1 0 1 0 0 0
..........................................GCCTATCGGTGTGTGCG.................................................................................................................................................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................CTTTTGAGATATACACGAAATGC....................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................AGTCGAATAAGGCATTGTG..................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................TAACAGTCGTCACTTAAAATC......................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0
................................................................................CTGTGCCTGTGCATGCGAGTGT....................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................AAACATATCTTTTGAGAC.................................................... 18 1 2 0.50 1 0 0 1 0 0 0 0 0
.......GCTTGGCTAGCGCGCT...................................................................................................................................................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 1 0 0 0 0
................................................................................................................................................................................AACAGTCGGCCAGAGTAACAG........................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 0 1 0
............................................................................................................................GCAAGAATACAAAGAA................................................................................................................................................................................. 16 1 9 0.11 1 0 0 0 0 0 0 0 1
...........................TCAGTCTTTTTCTTCGCCTA.............................................................................................................................................................................................................................................................................. 20 3 14 0.07 1 0 0 0 0 0 0 0 1
.................................GCTCTCTTCGTCTATCG........................................................................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 1 0 0 0 0
..............................................................................................................................................CAAGCAGAGAGGAACACGG............................................................................................................................................................ 19 3 16 0.06 1 0 0 0 0 0 0 1 0
..........................................................................................................................................................GACGAGGCATTGTGGCT.................................................................................................................................................. 17 2 17 0.06 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

GCGCAAGCGAACCGGTCGCGCGAGCATAGGCAGCGAAAGAAGCGGATAGCCACACACGCACGCGGACGGATGCACACACGGACACGGACACGTACGCTCACACACACAATTGTTTTACACTAATCGTTTTTATGTTTCTTTAGTCCGTCTCACCTTGTTCCGTAACACCGACTTTGTTGTCAGCCGCCGTCATTGTCAGCAGTGATTTTTTGTTGTTTTATATATACATAATTATTATCATGTATGTTTTGTATAGAAAACTCTATATGTGCTTTACGCTTTTAAACGTATTTTTCGTTACGCGACCGCGCCGTTGT
***********************************************************************************************************************************((.((((((.........((((...((((((((.....)).))))))...))))........)))))).))....((((....))))(((((......)))))...******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
GGGCAAGGGAACCGGTCGCGC........................................................................................................................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................AGAGATTTTTGGTTGTTTTATCT.............................................................................................. 23 3 2 0.50 1 0 0 1 0 0
................................................................................................................................................................................................................................................................................TTTACGCTTTTAAACGTTTTTTTCTT................... 26 2 2 0.50 1 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................................GCGACCGCGCTGTTGT 16 1 5 0.40 2 0 2 0 0 0
......................................................................................................................................................................ACCTACTTTGTTGTCA....................................................................................................................................... 16 1 3 0.33 1 0 0 0 1 0
.............................................................................................................................................................................................................................................................................................................GCGATCGCGCCGTAG. 15 2 20 0.25 5 5 0 0 0 0
..............................................................................................................................................................................................................................................................................................................CGACCGCGCTGTTGT 15 1 14 0.21 3 0 1 2 0 0
.......................................................................................................................................................................................................CAGGGATCTTTGGTTGTTTTA................................................................................................. 21 3 7 0.14 1 0 0 1 0 0
......................................................................................................................................................................................................GCAGAGATCTTTGGTTGTTT................................................................................................... 20 3 10 0.10 1 0 0 1 0 0
....................................................................................................................................................................................CAGCGGCCGGAATTGTCAG...................................................................................................................... 19 3 16 0.06 1 0 0 0 0 1
.........................ATAGCCAGCTAAAGAAG................................................................................................................................................................................................................................................................................... 17 2 18 0.06 1 0 1 0 0 0
........................GATAGCCAGCTAAAGAAG................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0
...........................................................................................GTGGGCTCACACGCACAAT............................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0
............................................................................................................................................................................................................ATCTTTTGTTGTTTTAT................................................................................................ 17 1 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:6994299-6994615 + dsi_19357 CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TAT--------------------------CCGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------GTGTGTGCGT--GCG---CCTGC-CTACGTGTGTGCCTGTGCCTGTGC------------------ATGCGAGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCAGAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCGGCGGCAGTAA------CA-----------------------------------GTCGTCACT---AAAAAACA-------------ACAAAA------------------------TATAT--------------A--------TGTATTAATAATAGTA---------------------------------------------------------------------------------CA--TA---------------------------------CAAAAC--AT--ATCTTTTGAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
droSec2 scaffold_2:7054060-7054376 + CGC-GTTCGCTT------GGCCAGCGGGCTC-G-----------------TAT--------------------------CCGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------GTGTGTGCGT--GCG---CCTGC-CTACGTGTGTGCCTGTGCCTGTGC------------------ATGCGAGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCAGAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCAGCGGCAGTAA------CA-----------------------------------GTCGTCACT---AAAAAACA-------------ACAAAA------------------------TATAT--------------A--------TGTATTAATAATAGTA---------------------------------------------------------------------------------CA--TA---------------------------------CAAAAC--AT--ATCTTTTGAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
dm3 chr3L:7127638-7127955 + CGC-GTTCGCTT------GGCCAGCG-GCTC-G-----------------TAT--------------------------CCGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------GTGTGTGCGT--GCG---CCTGC-CTACGTGTGTGCCT------GTGC------------------ATGCGAGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCGGCGGCAGTAA------CA-----------------------------------GTCGACACT---AAAAAACA-------------ACAAAA------------------------TA------TACACATATACA--------TATATTAATAATAGTA---------------------------------------------------------------------------------CA--TA---------------------------------CGAAAC--AT--ATCTTTTGAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
droEre2 scaffold_4784:4220155-4220483 - CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TCC--------------------------ATGTCGCTTTG-------------------------------------------------------------------------------------------------------------------------CTCGCCTTTCG-------CTGTGTGCGT--GCG---CCTGC-CTACGTGTGTGCCT------GTGCATGCGAGTGTGTGTGCGTGTGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCGGCGGCAGTAA------CA-----------------------------------GTCGGCACTGAGAAACAACA-------------A---CAAAT---------------------TTTAT--------------A--------T--GTTAATAATAATA---------------------------------------------------------------------------------CA--C----------------------------------AAAAAC--AT--ATCTTTCGTGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
droYak3 3L:7724317-7724653 + CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TCC--------------------------ATGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------GTGTGTGCGT--GCG---CCTGC-CTACGTGTGTGCCT------GTGCACGCGAGT------GTATGTGTATGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCGGCGGTAGTAA------CA-----------------------------------GTCGCTACT---AAAAAA-AAAAGGAAACAGCAACAAAA------------------------TATAT--------------G--------TATATTAATAATAGTA---------------------------------------------------------------------------------CA--CA-------------------------C------AAAAAAC--AT--ATCTTTTGAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
droEug1 scf7180000409466:5282259-5282609 + CGC-GTTCGCTT------GGCCAGCGCGCTT-G-----------------ACACT---CCGCTGCCG---------------------------------------------CTT----C-GCCCCCTTCGT----------------------------C---------CCTCGCTCA-TACTCTCTTGCCTTT---------------T----TC---AA-------GTGTATGCGT--GCA---CCTGC-CTACGTGTGTGCAT------G------------------TGTGTGCGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCAACGGTAACAG---CAA-----TGCATATAAA-----------CA---------------------AAAAAATA-------------C---AA---------------------------------------------------------TAATAATCATACACAACAA--A----TAAAA-------------------------------------------------------------TA--TA-------------------------------AAAAAAAC--AA--ATTTTTAAAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
droBia1 scf7180000302193:6033152-6033497 + CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TCACT---CCGCCGCAG---------------------------------------------CC---C-CCTCTCTCACTGCGC--------------------------CC--------CCTCGCCA-ACGCTCTCCT----A-----------------CACGACCGTCGA------GTGTGTGCGT--GCG---CCTGC-CTACGTGTGTGC------------------------------GAGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGG-------------------CATTGTGGCTGAA-ACAACAGTCAACGGCAACAG---CAG-----CGCACATAAA-----------TA-----------------------AAAACA-------------A---AATAT------------------------------------------------------T-ATAATAATACACGAAAAGAAGAC----AAGA---------------------------------------------------------------GA-------------------------AAAAAATTAAAAACAGAA--ATCTTAAAACATATACACG--AAATGCG---AGAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
droTak1 scf7180000415773:567799-568127 - CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TCACT---CCGCTGCCG---------------------------------------------CC---C-C-----CCTCCGC----------------------------CC--------CCTCGCTCG-CACTCTCTT----------------------CTCGCCTTTCGAG----TGTGTGTGCGT--GCG-------C-CTACGTGTGTGCGA------------------------GTGTGTGTGTGTTTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATTGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCAACGGCAACGG---CAG-----CGCACATAAA-----------TA------------------------------------------A---AAAA----------------------------------------------------TAGTAATAATAAAA---AA----CCG------------------------------------------------------------------------------------------------------------AAAAAC--AA--ATCTTTAAAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
droEle1 scf7180000491255:310981-311325 - CGC-GTTCGCT-------GGCCAGCCCGCTC-G-----------------TCACT---CCGCTGCC------------------------------------------------A----A-ACACCCGCCGC---CCCCCGCTCTCTCACTCGCT-------------------------------------TTTGCCGCCCGCTCTCCG-CTCGCCTTTCA-------GTGTGTGCGT--GCGC-CCATAC-CTA----TA---------------------------------ATGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCAACGGC----G---CAG-----TGGACATAAG-----------TA-----------------T----AAAAACA-------------A---AAAATATAA---------------------TCTACA------------------------------------CAACAA--AA---------------------------------------------------------------------TA--TA---------------------------------AAAAAC--AA--ATCTTTAAACATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
droRho1 scf7180000779994:19945-20287 + CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TAACT---CTGCTGCTG---------------------------------------------CC---C-C----CCAACCGC---CTCCCGCTCTCTCT--AGCC-------------------------------------TTTACCGCCCGCTCTCCG-CTCGCCTTTCG-------GTGTGTGCGT--GCGC-CCATAC-CTA----TA-----------------------------------ACGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCAACGGC----G---CAG-----CGCACATAAA-----------TA-----------------T---AAAAAACA-------------A---AAAAA---------------------TTAATATACA------------------------------------CAACAA--AG---------------------------------------------------------------------TA--TA---------------------------------AAAAAC--AA--ACCTTTAAACATATACACG--AAATGCG---AAAATCTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
droFic1 scf7180000453839:1108323-1108681 + CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TCATTTAGCCGCTGCCG---------------------------------------------CC---C-C-----CCTTCGCCCCCTCTCGCTCTCTCTCTC--------------------------G-CACTC--------------------------TCCGCCAGTTGAG----TGTGTGTGCGTGTGCG---CCTGC-CTACGTGTGTGT----GC------------------------CACTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCAACGGTAACAG---CAG-----TGCACATAAA-----------TT---------------------ACAAAACA-------------A---AA------------------------ATAAT--------------A--------TAAAATA---------C--AG----CCGACATAAAA-------------------------------------------------------------T---TA-------------------------------AAAAAAAC--AA--ATCTTTGGAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
droKik1 scf7180000302391:113785-114119 - CGC-GTTCGCTT------GGCCAGCGCTCTC-G-----------------TCACT---CC-------------------------------------------CG----ATACCGATACC-GATCCCGATAC----------------------------CCCCGCC---CTCCAC---ACACACCGCA-------------------------GCCTTTGG-------GTGTGTGCGT--G---------C-CTACGTGTGTGC--------------------------------GTGTATGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAACCCACAGGGCATTGTGGCTGAA-ACAACAGTCAAT-TCAACGA---CAG-----CGCACATAAA-----------TAAAAACAA-------CA--------------------------A-----------------------------TAAAA--------------A--------AATATTAACAAAAA------A------G------------------------------------------------------------------------------------------------------------AAAAAC--AAAATTATTTAAGAATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
droAna3 scaffold_13337:1658558-1658915 + TGC-CATCGCTT------GGCCAGCGCTCT--G-----------------TC----------------------------------------TGCTCCACTCCTG----CGGCCA----C-GCCCCCGCTGC----------------------------C---------CCCCGCCCAACGCTCTCTA-------------------------GCCGATCG-------AAGTGTGCGT--GCG---CCAGC-CTTCGTGTGTGTC-----------------------------GTGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAACACACCAGGCATTGTGGCTAAAAACAACGGTTAACGGCAGAAT------AC-----------------------------------GACAGAATT---AAAAAA-A---------------------A--AACACACACACAAAAAAAATTAAA--------------A--------TGTATTAAAACAAGTG---------------------------------------------------------------------------------GG--GG-------------------------G--------A-AA----A--ATAATATAAAATATACACGAGAAATGCG---ACAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
droBip1 scf7180000396544:435990-436375 - TGA-AATCGCTT------GGCCAGCGCTCT--G-----------------TC----------------------------------------TGCTCCACTCCTG----CAGCCA----C-GCCCCCGCTGC----------------------------CC--------CCCCGCCCAACGCTCTCTA-------------------------GCCGATCG-------AAGTGTGCGT--GCGCCGCCAGC-CTTCGTCTGTGTGT------------------------GTGTGCGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAATACACCAGGCATTGTGGCTAAAAACAACGGTTAACGGCA---------G-----CTCACATAC--GGCATACGGT---------------AGAAT---A-AAAATA-------------A---AAAAA--AACACACACACAAAACAAATTAAA--------------A--------TGTATTAAAACAAGTA---------------------------------------------------------------------------------GG--GG-------------------------G-------GAAAAA--AT--AATTTAAAATATATACACGAGAAATGCG---ATAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------
dp5 XR_group6:2306223-2306603 - CGCCGTTCGTTT------GGCCAACGCGCACCGAGTCTTTCGTTCG----TTCGT---TCGCTGTCGTCGTCGTCGTCGTCGTCGGTGGGTCTG----------------------------------------------------------GTCTATACC------TCACCTCGCTGGCCGCTCTCTT----TT---------------T--------------------TTGTACGT--GTG---TACGG-ATACGTGTGCGCCT------GTGT--------------------GCGCGAGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCGTAGTGGAACGC--AGGGCATTGTGGCTAAA-ACAACGG-------CAGCAGCGTTGG-----CGCACTCACACATCAGGAGGT---------------CCAAT---AAAGAACA-------------A---ATAATTCAAGA---------------------TATA------------------------------------CGCGAA--TA---------------------------------------------------------------------TACATAATATACATAA-TATACGGACGAAAT-------------------------------------------ATACG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCTGCAACA---------------------
droPer2 scaffold_9:596208-596592 - CGCCGTTCGTTT------GGCCAACGCGCACCGAGTCTTTCGTTCGTTCGTTCGT---TCGCTGTCGCCGTCGTCGTCGTCGTCGGTGGGTCTG----------------------------------------------------------GTCTATACC------TCACCTCGCTGGCCGCTCTCTT----TT---------------T--------------------TTGTACGT--GTG---TACGG-ATACGTGTGCGCCT------GTGT--------------------GCGCGAGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCGTAGTGGAACGC--AGGGCATTGTGGCTAAA-ACAACGG-------CAGCAGCGTTGG-----CGCACTCACACATCAGGAGGT---------------CCAAT---AAAGAACA-------------A---ATAATTCAAGA---------------------TATA------------------------------------CGCGAA--TA---------------------------------------------------------------------TACATAATATACATAA-TATACGGACGAAAT-------------------------------------------ATACG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCTGCAACA---------------------
droWil2 scf2_1100000004511:9429839-9430080 - CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGT-GAGAATGTGTGTGCTT--GCTCATATAGCCTTAC----GTGCAT------------------------GTGTGTGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAGAAAAAAAATCTGGCATAGTGA-------------------GTGGA-AAAAAGGTTG------------------------------------------------------------------------------------------A------AAGA---------------------TATA--CATACATATGTGTTTATGTATGTATGTAAGTA---------------------------------------------------------------------------------GA--TG-------------------------A--------A-AA----------------------AATT--AAATGCGACCAAAATTTGCATA-CAAATCAA----------CAGCAGCACCAACACCAACAACAACACAA
droVir3 scaffold_13049:9821027-9821345 - CGC-GTTTGCTTGGACTTGGCCAGCGCGCAT-G-----------------AG---------------------------CCGTCGGTTAGTCTGCGC------TGTTTACC--------------------------------------------------CTCTCT-------------------CTC---------------------T----CC-AACT-------GTGTGTGTGT---TG---TGTGT-GTGCGTGTGTGCGC--------------------------GTGCGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAAGAAGAAAAGAAGGCAACGCAATATAAAAAAAGCATTGTGGCAAAA-AG-----------------------------TGTG----------------TTAAAAATAA-------CA--------AA--------------------AAAAAAAAA---------------------AAAACG------------------------------------CAACGA--AAAC----AAAACAATTTTCGCTTCATTTAATATTTTTGTTAT-----------------TTGCATAAATACA--T--------------------------------------------------------------AC-------------AAAATATACATATAAAAGCCATAC------------------------------------
droMoj3 scaffold_6680:10955224-10955618 + CGC-GTTTGCTTGGATTTGGCCAGCGCGCAT-G-----------------AG---------------------------CCGTCGGTTAGTCTGCAC------TGTTTACCGTCC----C-TCTCTCTCTGT---CTCTCTCTCTCTCT----CT---------------------TTCACTCTTTCTC-------------------------TCCAAT----------AGTGTGCGT--CTG---TGTGC-ATGCGTGTGCGTGT------------------------GTCGGTGTCGGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAAGAAGAAAAGAAGGCAACGCGATAT----AAAGCATTGTGGCAAAAAAGAACAGAAAGCG-CAAAAA------CTGTG--------------------TTA-----------------------AAAATA-------------ACAAAA------------------------GA----TAT-------------------------------------CAACGA--AAAC----AAAACAATTTTTGCTTAA------ATTTTTTTTATTTTAAATTATAGTTGCTTTGC---------------ATAAATAAGTAGACAAATGAAAT----------------AT--A--------------TAAA--TTGTATG---TATGTATGTATA-AATA-----------------TAATA---------------------
droGri2 scaffold_15110:20392093-20392458 - CGC-GTTTGCTTGGATCTGGCCAGCGCGCAT-G-----------------AG---------------------------CCGTCGGTTAGTCTGCTCTTCTGCTGTTTACC--------------------------------------------------CTCTCT-------------------CTT---------------------T-CCAATACTCT-------GTGTGTGCGT--GCG--------------T--------------------------------GTTTGTGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAAGAAGAAAAGAAGGCAGCGCGATATAAAAGCAGCATTGTGGCAAAAACGAACAGATAGTGCG----A---AAG-----TGTG----------------TTAAAAATAACAGCC---A------CAAAATA-------------A---AAAAA---------------------------------------------------------TAAAAATACACAACAA--AGAC----AATATG-TTTTTGC--------------------------------------------------ATATATTTTGCACAA-AATACGAACCAAAT----------------AT--ATATACATATATATATAAT--AAATACT---AA---------A-AAGTTGAATGCGCTGGCGCTGCAACA---------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TAT--------------------------CCGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------GTGTGTGCGT--GCG---CCTGC-CTACGTGTGTGCCTGTGCCTGTGC------------------ATGCGAGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCAGAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCGGCGGCAGTAA------CA-----------------------------------GTCGTCACT---AAAAAACA-------------ACAAAA------------------------TATAT--------------A--------TGTATTAATAATAGTA---------------------------------------------------------------------------------CA--TA---------------------------------CAAAAC--AT--ATCTTTTGAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................GCTGAA-ACAACAGTCGGC.............................................................................................................................................................................................................................................................................................................................................................................................1814.00421100000000000000
......................................................................................................................................................................................................................GCCTATCG-------GTGTGTGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGAGATATACACG--AAATGC................................................................2311.00100010000000000000
.........................................................................................................................................................................................................................................................................CTGTGCCTGTGC------------------ATGCGAGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--AT--ATCTTTTGAGAC...............................................................................1820.50101000000000000000
droSec2
CGC-GTTCGCTT------GGCCAGCGGGCTC-G-----------------TAT--------------------------CCGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------GTGTGTGCGT--GCG---CCTGC-CTACGTGTGTGCCTGTGCCTGTGC------------------ATGCGAGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCAGAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCAGCGGCAGTAA------CA-----------------------------------GTCGTCACT---AAAAAACA-------------ACAAAA------------------------TATAT--------------A--------TGTATTAATAATAGTA---------------------------------------------------------------------------------CA--TA---------------------------------CAAAAC--AT--ATCTTTTGAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........GCTT------GGCCAGCGGGCTC-G-----------------TA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACG--AAATGCG---AAAATTTG....................................................2211.0010100
....................................................................................................................................................................................................................................................................................................................................................................GAGTGGAAC----AAGGCATTG..................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAC--AT--ATCTTTTGAGAT...............................................................................1911.0010010
........GCTT------GGCCAGCGGGCTC-G-----------------TAT--------------------------CCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
....GTTCGCTT------GGCCAGCGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
........GCTT------GGCCAGCGGGCTC-G-----------------T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
CGC-GTTCGCTT------GGCCAGCGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
............................................................................................................................................................................................................................................................................................................................................................ATCAGGCAGAGTGGAAC----AAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
....................................................T--------------------------CCGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
.GC-GTTCGCTT------GGCCAGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
CGC-GTTCGCTT------GGCCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...................GCCAGCGGGCTC-G-----------------TAT--------------------------CCGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------TT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000
......TCGCTT------GGCCAGCGGGCTC-G-----------------TA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
......................................................................................TTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------GTGTGTGCGT--G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
.........................................................................................................................................................................................................................................................................CTGTGCCTGTGC------------------ATGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
CGC-GTTCGCTT------GGCCAGCGGGCTC-G-----------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
dm3
CGC-GTTCGCTT------GGCCAGCG-GCTC-G-----------------TAT--------------------------CCGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------GTGTGTGCGT--GCG---CCTGC-CTACGTGTGTGCCT------GTGC------------------ATGCGAGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCGGCGGCAGTAA------CA-----------------------------------GTCGACACT---AAAAAACA-------------ACAAAA------------------------TA------TACACATATACA--------TATATTAATAATAGTA---------------------------------------------------------------------------------CA--TA---------------------------------CGAAAC--AT--ATCTTTTGAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
CGC-GTTCGCTT------GGCCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000020000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000
CGC-GTTCGCTT------GGCCAGCG-GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GTTCGCTT------GGCCAGCG-GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGC-GTTCGCTT------GGCCAGCG-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
....................................................................................GCTTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................ATCG-------GTGTGTGCGT--GCG---CCTGC-CTACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GC-GTTCGCTT------GGCCAGCG-CG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000
.....TTCGCTT------GGCCAGCG-GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTCGCTT------GGCCAGCG-GCTC-G-----------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
CGC-GTTCGCTT------GGCCAGCG-GCTC-G-----------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................CTGC-CTACGTGTGTGCCT------GTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..C-GTTCGCTT------GGCCAGCG-CG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................CGCCTATCG-------GTGTGTGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....GTTCGCTT------GGCCAGCG-GCTC-G-----------------TA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................GCCTATCG-------GTGTGTGCGT--G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TACGTGTGTGCCT------GTGC------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...................GCCAGCG-GCTC-G-----------------TAT--------------------------CCGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------GTGTGTGCGT--G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................CGCCTATCG-------GTGTGTGCGT--GCG---CCTGC-CT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................................................................................................................CCTATCG-------GTGTGTGCGT--GCG---CCTGC-CTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TATCG-------GTGTGTGCGT--GCG---CCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................................TGCGAGTGTGTGTGTTAACAAAATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AGTGGAAC----AAGGCATTGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................ATAGTGGAAC----AAGGCATTGTG................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................ATAGTGGAAC----AAGGCATTGTGGCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
CGC-GTTCGCTT------GGCCAGCG-CG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................TAT--------------------------CCGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TCGCCTATCG-------GTGTGTGCGT--G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................GCTTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------GTGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGC-GTTCGCTT------GGCCAGCG-GCTC-G-----------------TA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GGCATTGTGGCTGAA-ACAACAGTCG...............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TCGCCTATCG-------GTGTGTGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................GTGC------------------ATGCGAGTGTGTGTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................ATCAGGCATAGTGGAAC----AAGGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TCAGGCATAGTGGAAC----AAGGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................CCTATCG-------GTGTGTGCGT--G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...................GCCAGCG-GCTC-G-----------------TAT--------------------------CCGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................CCTATCG-------GTGTGTGCGT--GCG---CCTGC-C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................TC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------GTGTGTGCGT--GCG---CC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGC-GTTCGCTT------GGCCAGCG-GCTC-G-----------------TAT--------------------------CC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................ATAGTGGAAC----AAGGCATTGTGG...............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................CGCCTATCG-------GTGTGTGCGT--GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGATATACACG--AAATGCG---AAAA........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................GTGTGTGCGT--GCG---CCTGC-C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------GTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GTTCGCTT------GGCCAGCG-CG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GTTCGCTT------GGCCAGCG-GCAT-C-----------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GTTCGCTT------GGCCAGCG-TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGCTGAA-ACAAAC...................................................................................................................................................................................................................................................................................................................................................................................................18120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TCC--------------------------ATGTCGCTTTG-------------------------------------------------------------------------------------------------------------------------CTCGCCTTTCG-------CTGTGTGCGT--GCG---CCTGC-CTACGTGTGTGCCT------GTGCATGCGAGTGTGTGTGCGTGTGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCGGCGGCAGTAA------CA-----------------------------------GTCGGCACTGAGAAACAACA-------------A---CAAAT---------------------TTTAT--------------A--------T--GTTAATAATAATA---------------------------------------------------------------------------------CA--C----------------------------------AAAAAC--AT--ATCTTTCGTGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................AAAG-----AAATCAGGCATAGTGGAAC----...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.....TTCGCTT------GGCCAGCGCGCTC-G-----------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AGTAA------CA-----------------------------------GTCGGCACTGAGAAA...........................................................................................................................................................................................................................................................................................................................2211.0010000100
......................................................................................................................................................................................................................................................................................................................................................................GTGGAAC----AAGGCATTGTGGCT.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...................GCCAGCGCGCTC-G-----------------TCC--------------------------ATGTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
......................AGCGCGCTC-G-----------------TCC--------------------------ATGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
......................................................................................................................................................................................................................................TGTGTGCGT--GCG---CCTGC-CTACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
...................GCCAGCGCGCTC-G-----------------TCC--------------------------ATGTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
droYak3
CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TCC--------------------------ATGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------TTCGCCTATCG-------GTGTGTGCGT--GCG---CCTGC-CTACGTGTGTGCCT------GTGCACGCGAGT------GTATGTGTATGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCGGCGGTAGTAA------CA-----------------------------------GTCGCTACT---AAAAAA-AAAAGGAAACAGCAACAAAA------------------------TATAT--------------G--------TATATTAATAATAGTA---------------------------------------------------------------------------------CA--CA-------------------------C------AAAAAAC--AT--ATCTTTTGAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................CCAGCGCGCTC-G-----------------TCC--------------------------ATGTCGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000
..............................C-G-----------------TCC--------------------------ATGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------TTCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000
..................................................................................................................................................................................................................................................................TGTGTGCCT------GTGCACGCGAGT------GTATGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCGGTAGTAA------CA-----------------------------------GTCGCTACT---..............................................................................................................................................................................................................................................................................................................................2511.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................A-ACAACAGTCGGCGGTAGTAA------CA-----------------------------------GTCGCT....................................................................................................................................................................................................................................................................................................................................2911.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................AA-ACAACAGTCGGCGGTAGTAA------CA-----------------------------------GTC.......................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...........................GCTC-G-----------------TCC--------------------------ATGTCGCTTTC-------------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTGAA-ACAACAGTC................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000
...................GCCAGCGCGCTC-G-----------------TCC--------------------------ATGTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000
...............................................................................................................................................................................................................................................................................................................................................................................................GAA-ACAACAGTCGGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................1830.33100100000000
droEug1
CGC-GTTCGCTT------GGCCAGCGCGCTT-G-----------------ACACT---CCGCTGCCG---------------------------------------------CTT----C-GCCCCCTTCGT----------------------------C---------CCTCGCTCA-TACTCTCTTGCCTTT---------------T----TC---AA-------GTGTATGCGT--GCA---CCTGC-CTACGTGTGTGCAT------G------------------TGTGTGCGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCAACGGTAACAG---CAA-----TGCATATAAA-----------CA---------------------AAAAAATA-------------C---AA---------------------------------------------------------TAATAATCATACACAACAA--A----TAAAA-------------------------------------------------------------TA--TA-------------------------------AAAAAAAC--AA--ATTTTTAAAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TCACT---CCGCCGCAG---------------------------------------------CC---C-CCTCTCTCACTGCGC--------------------------CC--------CCTCGCCA-ACGCTCTCCT----A-----------------CACGACCGTCGA------GTGTGTGCGT--GCG---CCTGC-CTACGTGTGTGC------------------------------GAGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGG-------------------CATTGTGGCTGAA-ACAACAGTCAACGGCAACAG---CAG-----CGCACATAAA-----------TA-----------------------AAAACA-------------A---AATAT------------------------------------------------------T-ATAATAATACACGAAAAGAAGAC----AAGA---------------------------------------------------------------GA-------------------------AAAAAATTAAAAACAGAA--ATCTTAAAACATATACACG--AAATGCG---AGAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TCACT---CCGCTGCCG---------------------------------------------CC---C-C-----CCTCCGC----------------------------CC--------CCTCGCTCG-CACTCTCTT----------------------CTCGCCTTTCGAG----TGTGTGTGCGT--GCG-------C-CTACGTGTGTGCGA------------------------GTGTGTGTGTGTTTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATTGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCAACGGCAACGG---CAG-----CGCACATAAA-----------TA------------------------------------------A---AAAA----------------------------------------------------TAGTAATAATAAAA---AA----CCG------------------------------------------------------------------------------------------------------------AAAAAC--AA--ATCTTTAAAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGC-GTTCGCT-------GGCCAGCCCGCTC-G-----------------TCACT---CCGCTGCC------------------------------------------------A----A-ACACCCGCCGC---CCCCCGCTCTCTCACTCGCT-------------------------------------TTTGCCGCCCGCTCTCCG-CTCGCCTTTCA-------GTGTGTGCGT--GCGC-CCATAC-CTA----TA---------------------------------ATGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCAACGGC----G---CAG-----TGGACATAAG-----------TA-----------------T----AAAAACA-------------A---AAAATATAA---------------------TCTACA------------------------------------CAACAA--AA---------------------------------------------------------------------TA--TA---------------------------------AAAAAC--AA--ATCTTTAAACATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TAACT---CTGCTGCTG---------------------------------------------CC---C-C----CCAACCGC---CTCCCGCTCTCTCT--AGCC-------------------------------------TTTACCGCCCGCTCTCCG-CTCGCCTTTCG-------GTGTGTGCGT--GCGC-CCATAC-CTA----TA-----------------------------------ACGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCAACGGC----G---CAG-----CGCACATAAA-----------TA-----------------T---AAAAAACA-------------A---AAAAA---------------------TTAATATACA------------------------------------CAACAA--AG---------------------------------------------------------------------TA--TA---------------------------------AAAAAC--AA--ACCTTTAAACATATACACG--AAATGCG---AAAATCTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CGC-GTTCGCTT------GGCCAGCGCGCTC-G-----------------TCATTTAGCCGCTGCCG---------------------------------------------CC---C-C-----CCTTCGCCCCCTCTCGCTCTCTCTCTC--------------------------G-CACTC--------------------------TCCGCCAGTTGAG----TGTGTGTGCGTGTGCG---CCTGC-CTACGTGTGTGT----GC------------------------CACTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAAC----AAGGCATTGTGGCTGAA-ACAACAGTCAACGGTAACAG---CAG-----TGCACATAAA-----------TT---------------------ACAAAACA-------------A---AA------------------------ATAAT--------------A--------TAAAATA---------C--AG----CCGACATAAAA-------------------------------------------------------------T---TA-------------------------------AAAAAAAC--AA--ATCTTTGGAGATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGC-GTTCGCTT------GGCCAGCGCTCTC-G-----------------TCACT---CC-------------------------------------------CG----ATACCGATACC-GATCCCGATAC----------------------------CCCCGCC---CTCCAC---ACACACCGCA-------------------------GCCTTTGG-------GTGTGTGCGT--G---------C-CTACGTGTGTGC--------------------------------GTGTATGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAACCCACAGGGCATTGTGGCTGAA-ACAACAGTCAAT-TCAACGA---CAG-----CGCACATAAA-----------TAAAAACAA-------CA--------------------------A-----------------------------TAAAA--------------A--------AATATTAACAAAAA------A------G------------------------------------------------------------------------------------------------------------AAAAAC--AAAATTATTTAAGAATATACACG--AAATGCG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TGC-CATCGCTT------GGCCAGCGCTCT--G-----------------TC----------------------------------------TGCTCCACTCCTG----CGGCCA----C-GCCCCCGCTGC----------------------------C---------CCCCGCCCAACGCTCTCTA-------------------------GCCGATCG-------AAGTGTGCGT--GCG---CCAGC-CTTCGTGTGTGTC-----------------------------GTGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAACACACCAGGCATTGTGGCTAAAAACAACGGTTAACGGCAGAAT------AC-----------------------------------GACAGAATT---AAAAAA-A---------------------A--AACACACACACAAAAAAAATTAAA--------------A--------TGTATTAAAACAAGTG---------------------------------------------------------------------------------GG--GG-------------------------G--------A-AA----A--ATAATATAAAATATACACGAGAAATGCG---ACAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACGAGAAATGCG---AC..........................................................1811.001010000
.....ATCGCTT------GGCCAGCGCTCT--G-----------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................GCCAGCGCTCT--G-----------------TC----------------------------------------TGCTCCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....ATCGCTT------GGCCAGCGCTCT--G-----------------TC----------------------------------------TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.GC-CATCGCTT------GGCCAGCGCTCT--G-----------------T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................AATCAGGCATAGTGGAACACACC..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.................................................................................................................................................................................................................................................................GTGTGTGTC-----------------------------GTGTGTGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000001
.....................................................................................................................................................................................................................................................................GTGTC-----------------------------GTGTGTGTGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.171100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-A---------------------A--AACACACACACAAAAA..............................................................................................................................................................................................................................................................................2070.141010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-A---------------------A--AACACACACACAAAAAAC............................................................................................................................................................................................................................................................................21100.101010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------A--AACACACACACAAAAAAACC..........................................................................................................................................................................................................................................................................22110.091010000
droBip1
TGA-AATCGCTT------GGCCAGCGCTCT--G-----------------TC----------------------------------------TGCTCCACTCCTG----CAGCCA----C-GCCCCCGCTGC----------------------------CC--------CCCCGCCCAACGCTCTCTA-------------------------GCCGATCG-------AAGTGTGCGT--GCGCCGCCAGC-CTTCGTCTGTGTGT------------------------GTGTGCGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCATAGTGGAATACACCAGGCATTGTGGCTAAAAACAACGGTTAACGGCA---------G-----CTCACATAC--GGCATACGGT---------------AGAAT---A-AAAATA-------------A---AAAAA--AACACACACACAAAACAAATTAAA--------------A--------TGTATTAAAACAAGTA---------------------------------------------------------------------------------GG--GG-------------------------G-------GAAAAA--AT--AATTTAAAATATATACACGAGAAATGCG---ATAATTTGCATA-AAAAGCAATGCGCTGGCGCGGCAACA---------------------SizeHit CountTotal NormTotal
No Reads
dp5
CGCCGTTCGTTT------GGCCAACGCGCACCGAGTCTTTCGTTCG----TTCGT---TCGCTGTCGTCGTCGTCGTCGTCGTCGGTGGGTCTG----------------------------------------------------------GTCTATACC------TCACCTCGCTGGCCGCTCTCTT----TT---------------T--------------------TTGTACGT--GTG---TACGG-ATACGTGTGCGCCT------GTGT--------------------GCGCGAGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCGTAGTGGAACGC--AGGGCATTGTGGCTAAA-ACAACGG-------CAGCAGCGTTGG-----CGCACTCACACATCAGGAGGT---------------CCAAT---AAAGAACA-------------A---ATAATTCAAGA---------------------TATA------------------------------------CGCGAA--TA---------------------------------------------------------------------TACATAATATACATAA-TATACGGACGAAAT-------------------------------------------ATACG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCTGCAACA---------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................GG-------CAGCAGCGTTGG-----CGCACTCAC.................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.............................................................................................G----------------------------------------------------------GTCTATACC------TCACCTCGCTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
........................................................................................................................................................GTCTATACC------TCACCTCGCTGGCCGCTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................A-ACAACGG-------CAGCAGCGTTGG-----CGCAC.....................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................................TGGCTAAA-ACAACGG-------CAGCAGCG...................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................AATCAGGCGTAGTGGAACGC--AGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
droPer2
CGCCGTTCGTTT------GGCCAACGCGCACCGAGTCTTTCGTTCGTTCGTTCGT---TCGCTGTCGCCGTCGTCGTCGTCGTCGGTGGGTCTG----------------------------------------------------------GTCTATACC------TCACCTCGCTGGCCGCTCTCTT----TT---------------T--------------------TTGTACGT--GTG---TACGG-ATACGTGTGCGCCT------GTGT--------------------GCGCGAGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAG-----AAATCAGGCGTAGTGGAACGC--AGGGCATTGTGGCTAAA-ACAACGG-------CAGCAGCGTTGG-----CGCACTCACACATCAGGAGGT---------------CCAAT---AAAGAACA-------------A---ATAATTCAAGA---------------------TATA------------------------------------CGCGAA--TA---------------------------------------------------------------------TACATAATATACATAA-TATACGGACGAAAT-------------------------------------------ATACG---AAAATTTGCATA-AAAAGCAATGCGCTGGCGCTGCAACA---------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................TTTCGTTCGTTCGTTCGT---TCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................GTTAACAAAATGTGATTAGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.GCCGTTCGTTT------GGCCAACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAATGCGCTGGCGCTG..........................1911.001100000
......................................................................TCGTCGTCGTCGTCGGTGGGTCTG----------------------------------------------------------G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACA-------------A---ATAATTCAAG...........................................................................................................................................................................................................................................................................................1811.001010000
..............................................................TGTCGCCGTCGTCGTCGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.273300000
...............................................................GTCGCCGTCGTCGTCGTCGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.255500000
.........................................GTTCGTTCGTTCGT---TCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.251100000
droWil2
CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGT-GAGAATGTGTGTGCTT--GCTCATATAGCCTTAC----GTGCAT------------------------GTGTGTGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAGAAAAAAAATCTGGCATAGTGA-------------------GTGGA-AAAAAGGTTG------------------------------------------------------------------------------------------A------AAGA---------------------TATA--CATACATATGTGTTTATGTATGTATGTAAGTA---------------------------------------------------------------------------------GA--TG-------------------------A--------A-AA----------------------AATT--AAATGCGACCAAAATTTGCATA-CAAATCAA----------CAGCAGCACCAACACCAACAACAACACAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTATGTATGTATGTAA..................................................................................................................................................................................................................................1911.00100100
................................................................................................................................................................................................................................................................C----GTGCAT------------------------GTGTGTGTGTGTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23130.08100100
droVir3
CGC-GTTTGCTTGGACTTGGCCAGCGCGCAT-G-----------------AG---------------------------CCGTCGGTTAGTCTGCGC------TGTTTACC--------------------------------------------------CTCTCT-------------------CTC---------------------T----CC-AACT-------GTGTGTGTGT---TG---TGTGT-GTGCGTGTGTGCGC--------------------------GTGCGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAAGAAGAAAAGAAGGCAACGCAATATAAAAAAAGCATTGTGGCAAAA-AG-----------------------------TGTG----------------TTAAAAATAA-------CA--------AA--------------------AAAAAAAAA---------------------AAAACG------------------------------------CAACGA--AAAC----AAAACAATTTTCGCTTCATTTAATATTTTTGTTAT-----------------TTGCATAAATACA--T--------------------------------------------------------------AC-------------AAAATATACATATAAAAGCCATAC------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................AG---------------------------CCGTCGGTTAGTCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002020000000000000000000000000000000000000000000000000000000000000
........................CGCGCAT-G-----------------AG---------------------------CCGTCGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002020000000000000000000000000000000000000000000000000000000000000
..C-GTTTGCTTGGACTTGGCCAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000000100000000000000000000000000000000000010000000
..C-GTTTGCTTGGACTTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
...................GCCAGCGCGCAT-G-----------------AG---------------------------CCGTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000001000000000000000000000000000000000000000000000000000000
....GTTTGCTTGGACTTGGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
.............................................................................................................................................................................................................................................................................................................................................ATACAAAAGAAGAAAAGAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.......................GCGCGCAT-G-----------------AG---------------------------CCGTCGGTTAGTCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000000000000000000000000000000000000000000000000000000000000
....GTTTGCTTGGACTTGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.........................GCGCAT-G-----------------AG---------------------------CCGTCGGTTAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
..C-GTTTGCTTGGACTTGGCCAGCGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................TTAACAAAATGTGATTAGCAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
..........................CGCAT-G-----------------AG---------------------------CCGTCGGTTAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................GTCGGTTAGTCTGCGC------TGTTTACC--------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
...........................GCAT-G-----------------AG---------------------------CCGTCGGTTAGTCTGCGC------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.....TTTGCTTGGACTTGGCCAGCGCGCAT-G-----------------AG---------------------------CCGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3411.001000000000000000000000000000000000000000000000001000000000000000
CGC-GTTTGCTTGGACTTGGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CATTGTGGCAAAA-AG-----------------------------TGT.......................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
..............ACTTGGCCAGCGCGCAT-G-----------------AG---------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
..................................................AG---------------------------CCGTCGGTTAGTCTGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................GTGTGCGC--------------------------GTGCGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17130.081000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................TGT---TG---TGTGT-GTGCGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.061000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................G---TGTGT-GTGCGTGTGTGCGC--------------------------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.061000000000010000000000000000000000000000000000000000000000000000
droMoj3
CGC-GTTTGCTTGGATTTGGCCAGCGCGCAT-G-----------------AG---------------------------CCGTCGGTTAGTCTGCAC------TGTTTACCGTCC----C-TCTCTCTCTGT---CTCTCTCTCTCTCT----CT---------------------TTCACTCTTTCTC-------------------------TCCAAT----------AGTGTGCGT--CTG---TGTGC-ATGCGTGTGCGTGT------------------------GTCGGTGTCGGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAAGAAGAAAAGAAGGCAACGCGATAT----AAAGCATTGTGGCAAAAAAGAACAGAAAGCG-CAAAAA------CTGTG--------------------TTA-----------------------AAAATA-------------ACAAAA------------------------GA----TAT-------------------------------------CAACGA--AAAC----AAAACAATTTTTGCTTAA------ATTTTTTTTATTTTAAATTATAGTTGCTTTGC---------------ATAAATAAGTAGACAAATGAAAT----------------AT--A--------------TAAA--TTGTATG---TATGTATGTATA-AATA-----------------TAATA---------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................ACCGTCC----C-TCTCTCTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
..................................................AG---------------------------CCGTCGGTTAGTCTGCAC------TT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATA-------------ACAAAA------------------------GA----TAT-------------------------------------CAACGA--.....................................................................................................................................................................................................................2211.001100000
............................................................................................................ACCGTCC----C-TCTCTCTCTGT---CTCTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
........GCTTGGATTTGGCCAGCGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
............GGATTTGGCCAGCGCGCAT-G-----------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--TTGTATG---TATGTATGTAT.................................................2140.251100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--TTGTATG---TATGTATGTA..................................................2060.171100000
droGri2
CGC-GTTTGCTTGGATCTGGCCAGCGCGCAT-G-----------------AG---------------------------CCGTCGGTTAGTCTGCTCTTCTGCTGTTTACC--------------------------------------------------CTCTCT-------------------CTT---------------------T-CCAATACTCT-------GTGTGTGCGT--GCG--------------T--------------------------------GTTTGTGTGTGTGTGTGTGTTAACAAAATGTGATTAGCAAAAATACAAAAGAAGAAAAGAAGGCAGCGCGATATAAAAGCAGCATTGTGGCAAAAACGAACAGATAGTGCG----A---AAG-----TGTG----------------TTAAAAATAACAGCC---A------CAAAATA-------------A---AAAAA---------------------------------------------------------TAAAAATACACAACAA--AGAC----AATATG-TTTTTGC--------------------------------------------------ATATATTTTGCACAA-AATACGAACCAAAT----------------AT--ATATACATATATATATAAT--AAATACT---AA---------A-AAGTTGAATGCGCTGGCGCTGCAACA---------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:35 AM