ID:

dsi_19355

 Coordinate:

3l:15721382-15721531 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_15721532_15722032_-]; exon [3l_15721532_15722032_-]; intron [3l_15719669_15721531_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTTGCAGCGTGTGGCCAATGTGCTGCCCGACAAACTCAAGGAGGTGGCAGGTAAGTGAGGAGATGTGGCAGCTGCCATCGTAGAAATTGCATACCACTATTCTTGAATGACATTTTGGTTGTCCTAATGAGAGGAACAGAAGAAAACTTTTTCCAGAGAAATGGCTTGAGTGATAAATGCGGCTGAAAAGCATCACTGAATCATGATCAAAACAAAAAGTACATAAACACGTTCTTAGCTTGGCCAATTT
**************************************************.......((..(((((..(((((((.....((...(((.((..(((...((((.(((.((..((((..(((((((......))).))))..))))..)).))).))))...)))..)))))..))...)))))))....))))).))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M023
head
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
....................TGCTGCCCGACAAACTCAAGGA................................................................................................................................................................................................................ 22 0 1 2.00 2 0 0 1 1 0 0 0 0
.....................................................AGTGAGGTGTTGTGGCAGTTGCC.............................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0
.......................TGCCCGACAAACTCAAGGAGGTGG........................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................AGAAAACTTGTTCCAGA............................................................................................. 17 1 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................TGTGGAAGCTGCCATC........................................................................................................................................................................... 16 1 4 0.50 2 2 0 0 0 0 0 0 0
...............................................CAGGTAGGTGAGGAGA........................................................................................................................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................ATACACGCGGCTGAAAACCA.......................................................... 20 3 5 0.20 1 0 0 0 0 1 0 0 0
................................................AGGTAGGTGAGGAGA........................................................................................................................................................................................... 15 1 6 0.17 1 0 1 0 0 0 0 0 0
..........................................................GGGGATGTAGCAGCTGCC.............................................................................................................................................................................. 18 2 7 0.14 1 0 0 0 0 0 1 0 0
.....................................................................................ATTAAATACCACTACTCTTGA................................................................................................................................................ 21 3 8 0.13 1 0 0 1 0 0 0 0 0
.........................................................AGGAAATGTTGCGGCTGCCAT............................................................................................................................................................................ 21 3 10 0.10 1 0 0 0 0 0 0 1 0
.............................................................................................................................................TAAAACTTTTTCCAGA............................................................................................. 16 1 13 0.08 1 0 0 0 0 0 0 0 1
................................AACTCTAAGCGGTGGCAGG....................................................................................................................................................................................................... 19 3 17 0.06 1 1 0 0 0 0 0 0 0
..............................................................................................................................ATGAGGGGAAGAGAAGA........................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................CATAAGTGCGGCTGAAA.............................................................. 17 2 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

AAACGTCGCACACCGGTTACACGACGGGCTGTTTGAGTTCCTCCACCGTCCATTCACTCCTCTACACCGTCGACGGTAGCATCTTTAACGTATGGTGATAAGAACTTACTGTAAAACCAACAGGATTACTCTCCTTGTCTTCTTTTGAAAAAGGTCTCTTTACCGAACTCACTATTTACGCCGACTTTTCGTAGTGACTTAGTACTAGTTTTGTTTTTCATGTATTTGTGCAAGAATCGAACCGGTTAAA
**************************************************.......((..(((((..(((((((.....((...(((.((..(((...((((.(((.((..((((..(((((((......))).))))..))))..)).))).))))...)))..)))))..))...)))))))....))))).))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.........................GGGCTGTTTGAGTTCCTCC.............................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0
............................CTGTTTGAGTTCCTCCACCGT......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................TAAAACCAACAGGATT........................................................................................................................... 16 0 2 0.50 1 1 0 0 0 0 0
..............................................................................................................GTAAAACCAACAGGATT........................................................................................................................... 17 0 2 0.50 1 1 0 0 0 0 0
............................................................................................................................................................................................TCGTAGTGACTTAGG............................................... 15 1 15 0.07 1 0 0 0 1 0 0
....................................................................................................................................................................................................................................TGCAAGAATGGAATCG...... 16 2 20 0.05 1 0 0 0 1 0 0
...........................................................................................................................................................................................................................ATGTATTTGTGGAAG................ 15 1 20 0.05 1 0 0 0 0 1 0
..................................................................................................................................................................................................AGACTCAGTACTAGTTTG...................................... 18 3 20 0.05 1 0 0 0 0 0 1
............................................................TCTACACCTTCGACGGA............................................................................................................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0

Generated: 04/23/2015 at 06:44 PM