dsi_19349

exon [2r_10143336_10143780_-]; five_prime_UTR [2r_10143336_10143780_-]; intron [2r_10142296_10143335_-]

Name	Class	Family	Strand
(CA)n	Simple_repeat	Simple_repeat	+

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AATTAAGTTTTAAATAATACCCAACGACCGTGGAAAAACCAAACACAGTGGTAAGTAAAAGCGGAGGGGAAAACAGGAAAAAACACGTCACACGTGCGTGTGCGTGCGAGTGTGTGTGTGTGCGAGCAAGTGAGTGGGTGGGTGTCATAAATATTTTCGCACACACTTGTTCCTGCATTGATTTTACATTTTTCGCACAGGCTCAAACTTGTGTGTGCCGCACTCCAATTGGTCCAGGTAAATCCAATTA *****************************************************************************************************............(((((((((((...((..((((.......))))..))...)))))))))))**********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M053 female body	O001 Testis	M024 male body	M025 embryo	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo
.................................................................................................................................................CATAAATATTTTCGCACACAC....................................................................................	21	0	1	2.00	2	0	0	2	0	0	0	0
.................................................................................................................................................................................................CGCACAGGCTCAAACTTG.......................................	18	0	1	1.00	1	1	0	0	0	0	0	0
...........AAATAATACCCAACGACCGT...........................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0
.................TACCCAACGACCGTGGAAAAACC..................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................TTTTCGCACAGGCTCAAACT.........................................	20	0	1	1.00	1	0	1	0	0	0	0	0
.............ATAATACCCAACGACCGTG..........................................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................TACATTTTTCGCACAGGCT...............................................	19	0	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................TCCCTTCATTGATTTTACA..............................................................	19	2	2	0.50	1	0	0	0	0	0	1	0
.......................................................................................................GTGCGAGTGTGTGTGTGT.................................................................................................................................	18	0	20	0.05	1	0	0	0	0	0	0	1

TTAATTCAAAATTTATTATGGGTTGCTGGCACCTTTTTGGTTTGTGTCACCATTCATTTTCGCCTCCCCTTTTGTCCTTTTTTGTGCAGTGTGCACGCACACGCACGCTCACACACACACACGCTCGTTCACTCACCCACCCACAGTATTTATAAAAGCGTGTGTGAACAAGGACGTAACTAAAATGTAAAAAGCGTGTCCGAGTTTGAACACACACGGCGTGAGGTTAACCAGGTCCATTTAGGTTAAT **********************************************************************************............(((((((((((...((..((((.......))))..))...)))))))))))*****************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
.....................................................................................................................................................................................................GTCCGAGTTTGAACACAC...................................	18	0	1	2.00	2	2	0	0	0
......................................................................................................................................................................................................................................CCAGGTCCATTTAGGTAA..	18	1	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................CGACGGGAGGTTAACCAGG...............	19	2	5	0.20	1	0	0	1	0
...........................................................................................................................................................................................................................CTTGAGGTTAACCAG................	15	1	8	0.13	1	0	0	1	0
............................................CGTCACCATTCATTTTCT............................................................................................................................................................................................	18	2	10	0.10	1	0	1	0	0
.......................................................................................................................................................................................................................................CAGGTACATTTAGGT....	15	1	12	0.08	1	0	0	0	1
..............................................................................................................................................................................................................................GAGGTTAACCAGGAC.............	15	1	12	0.08	1	0	0	1	0
............................................................................................................................................................................................................................GCGAGGTTAACCAGG...............	15	1	13	0.08	1	0	0	1	0
.......AAAATCTATTATGGACTGC................................................................................................................................................................................................................................	19	3	16	0.06	1	0	0	1	0
...........................................................................................................................................................................................................................CTTGAGGTTAACCAGGA..............	17	2	20	0.05	1	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	2r:10143136-10143385 -	dsi_19349	AATTAAGT-TTTAAATAATACCCAA-------CGACCGTGGAAAAACCA------AA--C--------------------------------------------------------------ACAGTGGTAAGTAAAAGCGGAG-GGGAAAACAG---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGT--GCGTGTGC------GTGCGA-GTGTGTGTG-TG-------------------------------------------------------TGCGAGCAAGTGAG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGCATTGATTTTACATTTT-------TC------------------------------------------G----CACAGGCTCAAACTTGTGTGT------------GCCGC-ACTCCAATTGGTCCA-----------------GGTAAATCCAATTA
droSec2	scaffold_1:6998071-6998289 -		ATTA-AGT-TTTAAATAATACCCAA-------CGACCGTGGAAAAACCA------AA--C--------------------------------------------------------------ACAGTGGTAAGTAAAAGCGGAG-GGGAAAACAG---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACAA-------------------------GTGTGTG-TG-------------------------------------------------------TGCGAGCGAGTGAG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGCATTGATTTTACATTTT-------TT------------------------------------------G----CACAGGCTCAAACTTGTGTG-----------------C-ACT---------CCA-----------------GGTAAATCCAATTA
dm3	chr2R:9480196-9480448 -		AATTAAGT-TTTAAGTAATACCCAA-------CGACCGTGGAAAAACCA------AG--C--------------------------------------------------------------ACAGTGGTAAGTAAAAGACGAG-GGGAAAACAC---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGTGTGCGTGTGC------TTGCAA---GTGTGTG-TG-------------------------------------------------------TGCGAGCGTGTGAG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGCATTGATTTTATATTTT-------TC------------------------------------------G----CACAGGCTCAAACTTGTGTGTGCC---------GCCGC-ACTCCAATTGGTCCA-----------------GGTAAATCCAATTA
droEre2	scaffold_4845:16334086-16334329 +		CATTAAGA-TTTAAATAACACACAA-------CGACCGTGGAAAAACTA------AA--C--------------------------------------------------------------AAAGTGGTAAGTAAAAGCCGAG-GGGAAAACAA---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGT--GCGTGTGC------GTGCGA-------GTG-TG-------------------------------------------------------TGCGAGCGAGTGAG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGTATTGATTTTGTATTTT-------TC------------------------------------------G----CACAGGTTTAAACTTGTGTGT------------GCCGC-ACTCCAATTGGTCCA-----------------GTTGAGTCCAATTA
droYak3	2R:7468426-7468668 +		TATTAAGA-TTTAAATAACACCCAA-------CGACCGTGAAAAAACCA------AA--C--------------------------------------------------------------ATAGTGGTAAGTAAAAGCCGAG-GGGAAAACAA---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGT--GCGTGTGC------GT-------GTGAGTG-TG-------------------------------------------------------TGCAAGCGAGTGAG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGTATTGATTTTGTATT-T-------TT------------------------------------------G----CACAGGTTCAAACTTGTGTGT------------GCCGC-ACTCCAATTGGTCCA-----------------GCTAAATCCAATTA
droEug1	scf7180000409462:3381129-3381372 +		ACAAAAGT-TTAAAATAACACTTAA-------CGACCGGGCGAAAAGGA------AA--C--------------------------------------------------------------AAAGTGGTAAGTTAAATA--AA-AGGAAATCGAGAAGAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGT--GCATATG-----------------TGTGT------------------------------------------------------------GTGTGTGTGTCAG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CTTGCATTGATTTTTTTATAACATTTATTT------------------------------------------G----GACAGGTTTAAACTTGTGTTT------------CCCGC-ATTCCAATTGGTCCA-----------------GCTAAATCCAATTA
droBia1	scf7180000302291:680515-680747 +		ACTAAAGA-TTAAAATAACACCCAA-------CGACCGGGCCAA-A-GA------AT--C--------------------------------------------------------------CAAGTGGTAAGTTAAATACGAG-GGGAAAACAA---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGC--ACTTG-C-----------CAGTGGTGTGC-GT---------------------------------------------------------ATGT-TGTGTGGG------TGGGTTGGTGTCATA-------AATA-T--TTTCG------------------------------CA--C--AC----TTGTT-----CCTGCATTGATTTTT-----T-------TC------------------------------------------T----GACAGGTTCAAACTTGTGTGT------------GCGGC-GTTCCAATTGGTCCA-----------------GCCAAATCCAATTA
droTak1	scf7180000415401:1173139-1173345 +		ACTAAAGA-TTAAAATAACACCCAA-------CGACCGGGCAAA-AGGA------AA--C--------------------------------------------------------------AAAGTGGTAAGTAAAAGGCGAA-TCGAAAACAA---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGC--ACTTG-G-----------CA-----------------------------------------------------------------------------------------------GTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGCATTGATTTTTT----T-------TC------------------------------------------G----GGCAGGTTCAAACTTGTGTGC------------GCTGC-ATTCCAATTGGTCCA-----------------GCCAAATCCAATTA
droEle1	scf7180000491282:732161-732386 -		ACGAAAGA-TTAAAATAATACCCAA-------CGACCGAGCAAAAA-GA------AC--C--------------------------------------------------------------AAAGTGGTAAGTAAAA-----------AAACAAA--AAAAA------------------------------------------------------------------------------AAC-A------------------------------ACGTCACACGC--ACTTG-G-----------CTCTAGTGTGT-GT-------------------------------------------------------------CCGTGTGGG------TGG--GGGTGTCATA-------AATG-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGCATTGATTTTTT--TTT-------TC------------------------------------------G----GACACGTTCAAACTTGTGTGT------------GCCTC-GTTCCAATTGGTCCA-----------------GCCAAATCCAATTA
droRho1	scf7180000778108:2809-3026 -		ACGAAAGA-TTAAAATAATACCCAA-------CGACCGGGCCAA-AGGA------AT--C--------------------------------------------------------------AAAGTGGTAAGTAAA------------AAATAA---GAA--------------------------------------------------------------------------------AATAC------------------------------ACGTCACACGC--ACTTG-G-----------TACTGGTGTGT-GT-----------------------------------------------------------------TCGTG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGCATTGATTTTT-----T-------TC------------------------------------------G----GACAGGTTCAAACTTGTGTGT------------GCCGC-ATTCCAATTGGTCCA-----------------GCCAAATCCAATTA
droFic1	scf7180000454039:295709-295935 -		ACGAAAGATTTTAAATAAACCCCAA-------CGACCGGGCAAACAGAA------AC--C--------------------------------------------------------------AAAGTGGTAAGTACAAACAAAATATGAAATCAA---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGC--ACTTG-G-----------CAGTTGTGTGC------------------------------------------------------------------GTGTGTG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTTC----CCTGCATTGATTTTT-----T-------TC------------------------------------------G----GACGGGTTTAAACTT------------------GCCGC-TTTCCAATTGGTCCA-----------------GCCAAATCCAATTA
droKik1	scf7180000302638:178947-179163 +		ACGAGAGA---------ATACAGAG-------T---GGTGATAAAACG-----GATA--C--------------------------------------------------------------CAAGTGGTAAGTAAAA-------------ACAAGAAAAA--------------------------------------------------------------------------------CACAC------------------------------ACGTCACTCGC--AGTTA-G-----------T-----TGTGT-GT-------------------------------------------------------------------------------TTGTGTGTCATC-------AATGCT--TTTCG------------------------------CACACATATTTGTTCGTT-----CCTGCATTGATTTTCG----T-------TC------------------------------------------G----GACAGGTTCAAACTTGTGCGCGCC-------GTGCGGC-ATTCCAATTGGCTCGCCAAACC-----------AAAAATCCAATTA
droAna3	scaffold_13266:16784018-16784268 -		ATAA----------ATAAAATTAAA-------TAATCAGCTAAAAA----ACGCATATCC--------------------------------------------------------------TAAGTGGTAAGAACAAGCAGCA-GT---------------------------------------------------TC-----------------------------------------GGCAC------------------------------ACGTCATACGC--ATTTT-G-----------CACTGGTGTGA-GT---------------------------------------------------------------GTGTCAG--------TGTGTGTGTCATA-------AATA-AATT---------------------------------------------------------TTTGCATTGATTTTTTTCCAT---TTT-TTAAATTAAAATTAAAAAAAAAATAAAAAATTTT-ATGGGAAAGC----GACAGGTTCAGACTTGTTTGG------------GCCGCAATTCCAATTGGTCCA-----------------GA-AAATCCAATTA
droBip1	scf7180000396735:37613-37862 -		AAACGAA--------TATAACTAAATGCTCAGCTAGCAA-----------CCTCATATCC--------------------------------------------------------------TAAGTGGTAAGAACAA--------------------GTA--------------------------------ACAACTC-----------------------------------------GGCAC------------------------------ACGTCATACGC--ATTTT-G-----------CACTGGTGTGT-AT---------------------------------------------------------GTGTCTGTGTGTG------TGTGTCTGTGTCATA-------AATT-T--TAA-----------------------------------------------TTT-----TTTGCATTGATTTTTTTTCTCTTTTTTTTT------------------GAATAAAAAATTTAAATAGTCAGGC----GACAGGTTCAGACTTGCCTGT------------TCGGC-ATTCCAATTGGTCCA-----------------GAT-AATCCAATTA
dp5	3:14602840-14603069 +		AAGTTAA--------TAA-------------------------------------------------------------AAAATACGAA------------------GTCTAAGGAATTTTTTTAGTGGTAAATATCA---------------------------------------------------------------------------------------------------------------------------------------------------------ATATTCATGCAC-------ATTTGTGT--------------------------------------------------------------------GTGTG------TGTGCGTGTGTCATA-------AATA-T--TTTCGCACTCCGAAAACCACACAGTGAAAATTACACACAC--AC----TTGTTCCCCCCTCGCATTGATTTTCCCGCTT---TCCC-CT-----------------G-----------------AGA---GCAAAGACCCGTT----CTTATG--A------------GCGGC-ATTCCAATTGGTCCA-----------------C--ACATCACATT-
droPer2	scaffold_4:3003444-3003660 -		AATACGA---------------------------------------------------------------------------------A------------------GTCTAAGGAATTTT-TTAGTGGTAAATATCA---------------------------------------------------------------------------------------------------------------------------------------------------------ATATTCATGCAC-------ATTTGTGT--------------------------------------------------------------------GTGTG------TGTGCGTGTGTCATA-------AATA-T--TTTCGCACTCCGAAAACCATACAGTGAAAATTACACACAC--AC----TTGTTCCCCCCTCGCATTGATTTTCCCGCTT---TCCC-CT-----------------G-----------------AGA---GCAAAGACCCGTT----CTTATG--A------------GCGGC-ATTCCAATTGGTCCA-----------------C--ACATCACATT-
droWil2	scf2_1100000004514:3835961-3836207 -		AGTAAAA------------------------------------AAACGA------A------------------------------------------------------------------------------------------------------AAAAAAACCGCAAATAATTTTGGTAAGAGAAATTAATCAGTCTCACGGATCTTCTTTCCTATGTGTTTGTGTGTAAGTGAGTGTGTGCGT-----------------------------------------TTGTA--TGTGCGT---------------------------------------------------------------------------GTTTGTGTATGCG------TGGGTGTGTGTCATAATACAAAAATA-T--TTTCG------------------------------CAC----------TTGTTTCCCCCGTGCATTGATTTTTTT------------------------------------------------------------------------CTTGTGTTTGCCTTCTCACGTGCGGC-ATTCCAATTGGTCCACA----------------AAATATCCAATTA
droVir3	scaffold_12875:11114900-11115165 +		AATATATATTTCAAATAA-----AG-----------TGTGCGAA-AAAAAACTAATACT-----------------------------------------------------------------------TTGCATATT---GT-GGGTAAGTGA---CAA--------------------------------------------------------------------------------AATACATATTTCTATTTTTTTTTTCAGCGGCTCCTTCTACACACGC----T---G---------------------C---ATGCGTGGGCGTGAATCA--------------------------------------TGCCTG-------------------------CATA-TATGTATTTA-T--TTTCGCACTTTGTTTTTTTTTT-----TTTATTCACGCAC--AC----TTGTT-----TCAACATTGATTTTCC------------CC--------------------------------------------------ATGC-CAAGC--GCACGT------------GCGGC-TTTCCAACTGGCC-ACA--GTT-----------TCGTATCCAATTG
droMoj3	scaffold_6496:15811124-15811432 -		AAACAAA--------GAGGTGTGTGTAAGGAAATA---------------GCGAATTCTTTTTGCGGTTGAGTAAGTAAAAAATACGAACAAATCAATTTTAAGTACATATAAATAATTTTT----------------------------------------------------------------------------------------------------------------------------------------------TCGTCAACACCTACGTCACACAC----TAT-G-----------CGTGGGCGTGA-A----------------TCATGCTTAAATATATATATATATATATATGCACATACACATGCACACATATGAATGTATGTGTGCA-----TATA-------GATA-T--TTTCG------------------------------CA--C--AC----TTGTT-----TCCACATTGATTTTCCC------------T------------------------------------------T----AGCAAGC--------GCACGT------------GCTGA-TTTCCAACTGGTC-GCA--ACTGAGTTATCCAATTGGACCAATTTA
droGri2	scaffold_15081:4141283-4141353 -		TGTGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--GTGTGTGT------GT-------GTGTGTG-TG-------------------------------------------------------TGTGTGTATGTGTG------TGTGTGGGTGCCATA-------AACA-T--TAAGG------------------------------CGCAC--A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AATTAAGT-TTTAAATAATACCCAA-------CGACCGTGGAAAAACCA------AA--C--------------------------------------------------------------ACAGTGGTAAGTAAAAGCGGAG-GGGAAAACAG---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGT--GCGTGTGC------GTGCGA-GTGTGTGTG-TG-------------------------------------------------------TGCGAGCAAGTGAG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGCATTGATTTTACATTTT-------TC------------------------------------------G----CACAGGCTCAAACTTGTGTGT------------GCCGC-ACTCCAATTGGTCCA-----------------GGTAAATCCAATTA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................CATA-------AATA-T--TTTCG------------------------------CACAC--AC----............................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------------G----CACAGGCTCAAACTTG.....................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AAATAATACCCAA-------CGACCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TACCCAA-------CGACCGTGGAAAAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-------TC------------------------------------------G----CACAGGCTCAAACT.......................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATAATACCCAA-------CGACCGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATTTT-------TC------------------------------------------G----CACAGGCT.............................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................GTGCGA-GTGTGTGTG-TG-------------------------------------------------------T.............................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

ATTA-AGT-TTTAAATAATACCCAA-------CGACCGTGGAAAAACCA------AA--C--------------------------------------------------------------ACAGTGGTAAGTAAAAGCGGAG-GGGAAAACAG---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACAA-------------------------GTGTGTG-TG-------------------------------------------------------TGCGAGCGAGTGAG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGCATTGATTTTACATTTT-------TT------------------------------------------G----CACAGGCTCAAACTTGTGTG-----------------C-ACT---------CCA-----------------GGTAAATCCAATTA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

AATTAAGT-TTTAAGTAATACCCAA-------CGACCGTGGAAAAACCA------AG--C--------------------------------------------------------------ACAGTGGTAAGTAAAAGACGAG-GGGAAAACAC---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGTGTGCGTGTGC------TTGCAA---GTGTGTG-TG-------------------------------------------------------TGCGAGCGTGTGAG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGCATTGATTTTATATTTT-------TC------------------------------------------G----CACAGGCTCAAACTTGTGTGTGCC---------GCCGC-ACTCCAATTGGTCCA-----------------GGTAAATCCAATTA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................AG------TGGGTGGGTGTCATA-------AAT.................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AA-------CGACCGTGGAAAAACCA------AG--C--------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................A-------CGACCGTGGAAAAACCA------AG--C--------------------------------------------------------------ACAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGTCCA-----------------GGTAAATCCAATT.	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................CCA------AG--C--------------------------------------------------------------ACAGTGGTAAGTAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................ACGTGTGCGTGTGC------TTGCAA---G..............................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................CGTGTGCGTGTGC------TTGCAA---GT.............................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TACCCAA-------CGACCGTGGAAAAACCA------AG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCC---------GCCGC-ACTC..........................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AGTGGTAAGTAAAAGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................................................................................................................TGC------TTGCAA---GTGTGTG-TG-------------------------------------------------------TGC...........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------TC------------------------------------------G----CACAGGCTCAAACTTG.....................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TG-TG-------------------------------------------------------TGCGAGCGTGTGAG------..........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACCCAA-------CGACCGTGGAAAAACCA------AG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TAAGTAATACCCAA-------CGACCGTGGAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GTGTG-TG-------------------------------------------------------TGCGAGCGTGTG..................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AGTGGTAAGTAAAAGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................A-------CGACCGTGGAAAAACCA------AG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGCGAGCGTGTGAG------TGGGTGGGTG................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CATTAAGA-TTTAAATAACACACAA-------CGACCGTGGAAAAACTA------AA--C--------------------------------------------------------------AAAGTGGTAAGTAAAAGCCGAG-GGGAAAACAA---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGT--GCGTGTGC------GTGCGA-------GTG-TG-------------------------------------------------------TGCGAGCGAGTGAG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGTATTGATTTTGTATTTT-------TC------------------------------------------G----CACAGGTTTAAACTTGTGTGT------------GCCGC-ACTCCAATTGGTCCA-----------------GTTGAGTCCAATTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................ACAA-------CGACCGTGGAAAAACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................G-TG-------------------------------------------------------TGCGAGCGAGTGAG------TGGGT.....................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..................................ACCGTGGAAAAACTA------AA--C--------------------------------------------------------------AAAGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
.......A-TTTAAATAACACACAA-------CGACCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
........................A-------CGACCGTGGAAAAACTA------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...........TAAATAACACACAA-------CGACCGTGGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GTGTGC------GTGCGA-------GTG-TG-------------------------------------------------------TGCGA.........................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	1	0	0	0

droYak3

TATTAAGA-TTTAAATAACACCCAA-------CGACCGTGAAAAAACCA------AA--C--------------------------------------------------------------ATAGTGGTAAGTAAAAGCCGAG-GGGAAAACAA---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGT--GCGTGTGC------GT-------GTGAGTG-TG-------------------------------------------------------TGCAAGCGAGTGAG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGTATTGATTTTGTATT-T-------TT------------------------------------------G----CACAGGTTCAAACTTGTGTGT------------GCCGC-ACTCCAATTGGTCCA-----------------GCTAAATCCAATTA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................GAG------TGGGTGGGTGTCATA-------AAT.................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATTTTGTATT-T-------TT------------------------------------------G----CACAGGT..............................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........TTAAATAACACCCAA-------CGACCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............TAACACCCAA-------CGACCGTGAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................ACCCAA-------CGACCGTGAAAAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....AAGA-TTTAAATAACACCCAA-------CGACCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGCAAGCGAGTGAG------TGGGTGGGT.................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

ACAAAAGT-TTAAAATAACACTTAA-------CGACCGGGCGAAAAGGA------AA--C--------------------------------------------------------------AAAGTGGTAAGTTAAATA--AA-AGGAAATCGAGAAGAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGT--GCATATG-----------------TGTGT------------------------------------------------------------GTGTGTGTGTCAG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CTTGCATTGATTTTTTTATAACATTTATTT------------------------------------------G----GACAGGTTTAAACTTGTGTTT------------CCCGC-ATTCCAATTGGTCCA-----------------GCTAAATCCAATTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACTAAAGA-TTAAAATAACACCCAA-------CGACCGGGCCAA-A-GA------AT--C--------------------------------------------------------------CAAGTGGTAAGTTAAATACGAG-GGGAAAACAA---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGC--ACTTG-C-----------CAGTGGTGTGC-GT---------------------------------------------------------ATGT-TGTGTGGG------TGGGTTGGTGTCATA-------AATA-T--TTTCG------------------------------CA--C--AC----TTGTT-----CCTGCATTGATTTTT-----T-------TC------------------------------------------T----GACAGGTTCAAACTTGTGTGT------------GCGGC-GTTCCAATTGGTCCA-----------------GCCAAATCCAATTA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACTAAAGA-TTAAAATAACACCCAA-------CGACCGGGCAAA-AGGA------AA--C--------------------------------------------------------------AAAGTGGTAAGTAAAAGGCGAA-TCGAAAACAA---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGC--ACTTG-G-----------CA-----------------------------------------------------------------------------------------------GTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGCATTGATTTTTT----T-------TC------------------------------------------G----GGCAGGTTCAAACTTGTGTGC------------GCTGC-ATTCCAATTGGTCCA-----------------GCCAAATCCAATTA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACGAAAGA-TTAAAATAATACCCAA-------CGACCGAGCAAAAA-GA------AC--C--------------------------------------------------------------AAAGTGGTAAGTAAAA-----------AAACAAA--AAAAA------------------------------------------------------------------------------AAC-A------------------------------ACGTCACACGC--ACTTG-G-----------CTCTAGTGTGT-GT-------------------------------------------------------------CCGTGTGGG------TGG--GGGTGTCATA-------AATG-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGCATTGATTTTTT--TTT-------TC------------------------------------------G----GACACGTTCAAACTTGTGTGT------------GCCTC-GTTCCAATTGGTCCA-----------------GCCAAATCCAATTA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACGAAAGA-TTAAAATAATACCCAA-------CGACCGGGCCAA-AGGA------AT--C--------------------------------------------------------------AAAGTGGTAAGTAAA------------AAATAA---GAA--------------------------------------------------------------------------------AATAC------------------------------ACGTCACACGC--ACTTG-G-----------TACTGGTGTGT-GT-----------------------------------------------------------------TCGTG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTT-----CCTGCATTGATTTTT-----T-------TC------------------------------------------G----GACAGGTTCAAACTTGTGTGT------------GCCGC-ATTCCAATTGGTCCA-----------------GCCAAATCCAATTA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACGAAAGATTTTAAATAAACCCCAA-------CGACCGGGCAAACAGAA------AC--C--------------------------------------------------------------AAAGTGGTAAGTACAAACAAAATATGAAATCAA---GAA--------------------------------------------------------------------------------AAAAC------------------------------ACGTCACACGC--ACTTG-G-----------CAGTTGTGTGC------------------------------------------------------------------GTGTGTG------TGGGTGGGTGTCATA-------AATA-T--TTTCG------------------------------CACAC--AC----TTGTTC----CCTGCATTGATTTTT-----T-------TC------------------------------------------G----GACGGGTTTAAACTT------------------GCCGC-TTTCCAATTGGTCCA-----------------GCCAAATCCAATTA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACGAGAGA---------ATACAGAG-------T---GGTGATAAAACG-----GATA--C--------------------------------------------------------------CAAGTGGTAAGTAAAA-------------ACAAGAAAAA--------------------------------------------------------------------------------CACAC------------------------------ACGTCACTCGC--AGTTA-G-----------T-----TGTGT-GT-------------------------------------------------------------------------------TTGTGTGTCATC-------AATGCT--TTTCG------------------------------CACACATATTTGTTCGTT-----CCTGCATTGATTTTCG----T-------TC------------------------------------------G----GACAGGTTCAAACTTGTGCGCGCC-------GTGCGGC-ATTCCAATTGGCTCGCCAAACC-----------AAAAATCCAATTA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATAA----------ATAAAATTAAA-------TAATCAGCTAAAAA----ACGCATATCC--------------------------------------------------------------TAAGTGGTAAGAACAAGCAGCA-GT---------------------------------------------------TC-----------------------------------------GGCAC------------------------------ACGTCATACGC--ATTTT-G-----------CACTGGTGTGA-GT---------------------------------------------------------------GTGTCAG--------TGTGTGTGTCATA-------AATA-AATT---------------------------------------------------------TTTGCATTGATTTTTTTCCAT---TTT-TTAAATTAAAATTAAAAAAAAAATAAAAAATTTT-ATGGGAAAGC----GACAGGTTCAGACTTGTTTGG------------GCCGCAATTCCAATTGGTCCA-----------------GA-AAATCCAATTA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-ATGGGAAAGC----GACAGGTTCA...........................................................................	22	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTTTGG------------GCCGCAATTCC.........................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................ATTTT-G-----------CACTGGTGTGA-GT---------------------------------------------------------------.......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................AACAAGCAGCA-GT---------------------------------------------------TC-----------------------------------------GGCAC------------------------------AC.................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droBip1

AAACGAA--------TATAACTAAATGCTCAGCTAGCAA-----------CCTCATATCC--------------------------------------------------------------TAAGTGGTAAGAACAA--------------------GTA--------------------------------ACAACTC-----------------------------------------GGCAC------------------------------ACGTCATACGC--ATTTT-G-----------CACTGGTGTGT-AT---------------------------------------------------------GTGTCTGTGTGTG------TGTGTCTGTGTCATA-------AATT-T--TAA-----------------------------------------------TTT-----TTTGCATTGATTTTTTTTCTCTTTTTTTTT------------------GAATAAAAAATTTAAATAGTCAGGC----GACAGGTTCAGACTTGCCTGT------------TCGGC-ATTCCAATTGGTCCA-----------------GAT-AATCCAATTA	Size	Hit Count	Total Norm	Total
No Reads

dp5

AAGTTAA--------TAA-------------------------------------------------------------AAAATACGAA------------------GTCTAAGGAATTTTTTTAGTGGTAAATATCA---------------------------------------------------------------------------------------------------------------------------------------------------------ATATTCATGCAC-------ATTTGTGT--------------------------------------------------------------------GTGTG------TGTGCGTGTGTCATA-------AATA-T--TTTCGCACTCCGAAAACCACACAGTGAAAATTACACACAC--AC----TTGTTCCCCCCTCGCATTGATTTTCCCGCTT---TCCC-CT-----------------G-----------------AGA---GCAAAGACCCGTT----CTTATG--A------------GCGGC-ATTCCAATTGGTCCA-----------------C--ACATCACATT-	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................TGTGT--------------------------------------------------------------------GTGTG------TGTGCGTGTGTCATA-------A...................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......A--------TAA-------------------------------------------------------------AAAATACGAA------------------GTCTAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTTCCCGCTT---TCCC-CT-----------------G-----------------AGA---..........................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TCCC-CT-----------------G-----------------AGA---GCAAAGACCC................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......A--------TAA-------------------------------------------------------------AAAATACGAA------------------GTCTAAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................ATACGAA------------------GTCTAAGGAATTTTTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GT--------------------------------------------------------------------GTGTG------TGTGCGTGTGT...............................................................................................................................................................................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TTTGTGT--------------------------------------------------------------------GTGTG------TGTGCGTG..................................................................................................................................................................................................................................................	20	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TTTGTGT--------------------------------------------------------------------GTGTG------TGTGCGT...................................................................................................................................................................................................................................................	19	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TTTGTGT--------------------------------------------------------------------GTGTG------TGTGCG....................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

AATACGA---------------------------------------------------------------------------------A------------------GTCTAAGGAATTTT-TTAGTGGTAAATATCA---------------------------------------------------------------------------------------------------------------------------------------------------------ATATTCATGCAC-------ATTTGTGT--------------------------------------------------------------------GTGTG------TGTGCGTGTGTCATA-------AATA-T--TTTCGCACTCCGAAAACCATACAGTGAAAATTACACACAC--AC----TTGTTCCCCCCTCGCATTGATTTTCCCGCTT---TCCC-CT-----------------G-----------------AGA---GCAAAGACCCGTT----CTTATG--A------------GCGGC-ATTCCAATTGGTCCA-----------------C--ACATCACATT-	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TCCC-CT-----------------G-----------------AGA---GCAAAGACC.................................................................................	20	1	1.00	1	0	1	0	0	0	0

droWil2

AGTAAAA------------------------------------AAACGA------A------------------------------------------------------------------------------------------------------AAAAAAACCGCAAATAATTTTGGTAAGAGAAATTAATCAGTCTCACGGATCTTCTTTCCTATGTGTTTGTGTGTAAGTGAGTGTGTGCGT-----------------------------------------TTGTA--TGTGCGT---------------------------------------------------------------------------GTTTGTGTATGCG------TGGGTGTGTGTCATAATACAAAAATA-T--TTTCG------------------------------CAC----------TTGTTTCCCCCGTGCATTGATTTTTTT------------------------------------------------------------------------CTTGTGTTTGCCTTCTCACGTGCGGC-ATTCCAATTGGTCCACA----------------AAATATCCAATTA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................................................GTAAGAGAAATTAATCAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................GCAAATAATTTTGGTAAGAGAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................CACGGATCTTCTTTCCTATGTGTTTGTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	1	0	0

droVir3

AATATATATTTCAAATAA-----AG-----------TGTGCGAA-AAAAAACTAATACT-----------------------------------------------------------------------TTGCATATT---GT-GGGTAAGTGA---CAA--------------------------------------------------------------------------------AATACATATTTCTATTTTTTTTTTCAGCGGCTCCTTCTACACACGC----T---G---------------------C---ATGCGTGGGCGTGAATCA--------------------------------------TGCCTG-------------------------CATA-TATGTATTTA-T--TTTCGCACTTTGTTTTTTTTTT-----TTTATTCACGCAC--AC----TTGTT-----TCAACATTGATTTTCC------------CC--------------------------------------------------ATGC-CAAGC--GCACGT------------GCGGC-TTTCCAACTGGCC-ACA--GTT-----------TCGTATCCAATTG

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

AAACAAA--------GAGGTGTGTGTAAGGAAATA---------------GCGAATTCTTTTTGCGGTTGAGTAAGTAAAAAATACGAACAAATCAATTTTAAGTACATATAAATAATTTTT----------------------------------------------------------------------------------------------------------------------------------------------TCGTCAACACCTACGTCACACAC----TAT-G-----------CGTGGGCGTGA-A----------------TCATGCTTAAATATATATATATATATATATGCACATACACATGCACACATATGAATGTATGTGTGCA-----TATA-------GATA-T--TTTCG------------------------------CA--C--AC----TTGTT-----TCCACATTGATTTTCCC------------T------------------------------------------T----AGCAAGC--------GCACGT------------GCTGA-TTTCCAACTGGTC-GCA--ACTGAGTTATCCAATTGGACCAATTTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................AATTCTTTTTGCGGTTGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..................................................................................ATACGAACAAATCAATTTTAAGTACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--ACTGAGTTATCCAATTGGAC.......	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................ATGCACATACACATGCACACAT.....................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............GAGGTGTGTGTAAGGAAATA---------------GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.................GGTGTGTGTAAGGAAATA---------------GCGAATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1

droGri2

TGTGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--GTGTGTGT------GT-------GTGTGTG-TG-------------------------------------------------------TGTGTGTATGTGTG------TGTGTGGGTGCCATA-------AACA-T--TAAGG------------------------------CGCAC--A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_19349

2r:10143186-10143335 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-17.7	-17.6	-17.6