ID:dsi_19337 |
Coordinate:3r:17538895-17539044 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
intergenic
No Repeatable elements found
|
AGCTGGAGACGGACGGAGTCCGGCTGACTGCGCATCCATACTCAACACCGGTAAGTTCAGCCTTTTATTTATAGTATATATGTGGGTTCACAATTTAAGCCCCTTGAATTCTTTACCCCAAAATACTAAAGTTGAGCTACAGAAAATTCAACTTGGAAAAGTCGTGCCGAGCATCATTAACATGCCGAAATTCGACTCCCCTGGCTGATACGGAATATATTCGGGGCGGGCGAGGGTTTAAATATCTATT
**************************************************(((.(((((((.((.......((((((...((.((((....((((((((...))))))))....))))))..))))))))))))))))))..............(((...((((...((.((((.......)))))).....))))))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR902008 ovaries |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................AGCTCCTTGAATTCTATACCCCAAGA............................................................................................................................... | 26 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 |
| ........................TGACTGCGCATCCATACTCAACAC.......................................................................................................................................................................................................... | 24 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 |
| .........................................................................................................................AAAGCTAAAGTTGAGCTACA............................................................................................................. | 20 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 |
| ...............................................................TTTAATGATAGTATATATGTGA..................................................................................................................................................................... | 22 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 |
| .............................................................................................................................CTAAAGTTGAGCTAT.............................................................................................................. | 15 | 1 | 16 | 0.38 | 6 | 6 | 0 | 0 | 0 |
| ............................................................................................................................GCTAAAGTTGAGCTA............................................................................................................... | 15 | 1 | 20 | 0.15 | 3 | 3 | 0 | 0 | 0 |
| .............................................................................................................................CTAAAGTTGAGCTAGA............................................................................................................. | 16 | 1 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 |
| ...........................................................................................AATTTAAGCCTATTGAACTC........................................................................................................................................... | 20 | 3 | 16 | 0.13 | 2 | 0 | 2 | 0 | 0 |
| ............................................................................................................................GCTAAAGTTGAGCTAC.............................................................................................................. | 16 | 1 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 |
| .............................................................................................................................CTAAAGTTGAGCTAAA............................................................................................................. | 16 | 1 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 |
| ............................................................................................................................GCTAAAGTTGAGCTATAAAAAA........................................................................................................ | 22 | 3 | 11 | 0.09 | 1 | 1 | 0 | 0 | 0 |
| .............................................................................................................................CTAAAGTTGAGCTATCG............................................................................................................ | 17 | 2 | 13 | 0.08 | 1 | 1 | 0 | 0 | 0 |
| .........................................................................................................................AAAGCTAAAGTTGAGCTA............................................................................................................... | 18 | 2 | 16 | 0.06 | 1 | 1 | 0 | 0 | 0 |
| .............................................................................................................................CTAAAGTTGAGCTATACCA.......................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................TGGCTGATAAGGAAT.................................. | 15 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 |
| ........................TGACTGCGCATCAAGA.................................................................................................................................................................................................................. | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 |
| .............................................................................................................................CTAAAGTTGAGCTAA.............................................................................................................. | 15 | 1 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 |
|
TCGACCTCTGCCTGCCTCAGGCCGACTGACGCGTAGGTATGAGTTGTGGCCATTCAAGTCGGAAAATAAATATCATATATACACCCAAGTGTTAAATTCGGGGAACTTAAGAAATGGGGTTTTATGATTTCAACTCGATGTCTTTTAAGTTGAACCTTTTCAGCACGGCTCGTAGTAATTGTACGGCTTTAAGCTGAGGGGACCGACTATGCCTTATATAAGCCCCGCCCGCTCCCAAATTTATAGATAA
**************************************************(((.(((((((.((.......((((((...((.((((....((((((((...))))))))....))))))..))))))))))))))))))..............(((...((((...((.((((.......)))))).....))))))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR553488 RT_0-2 hours eggs |
O002 Head |
M024 male body |
|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................TCGAGGAACTTAAGATATGGGGTT................................................................................................................................. | 24 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................TCGAGGAACTTAAGATATGGGGT.................................................................................................................................. | 23 | 2 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................GTTCGAGGAACTTAAGATATGGGGTT................................................................................................................................. | 26 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................GTAGGTATGAGTTGTC.......................................................................................................................................................................................................... | 16 | 1 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...........................................................................................................................ACGATTTCAACTCGAT............................................................................................................... | 16 | 1 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .........................................................................................................................TTTCGATTTCAACTCGAT............................................................................................................... | 18 | 2 | 16 | 0.13 | 2 | 0 | 0 | 2 | 0 | 0 | 0 |
| .........................................................................................................................................................................................GCTTTAAGGTGAGAGGA................................................ | 17 | 2 | 19 | 0.11 | 2 | 0 | 1 | 0 | 1 | 0 | 0 |
| ............................ACGTGGTGGTATGAGTTGT........................................................................................................................................................................................................... | 19 | 3 | 20 | 0.10 | 2 | 0 | 0 | 2 | 0 | 0 | 0 |
| .......................................................................................................................................AGATCTCTTTTAAGTTGA................................................................................................. | 18 | 2 | 11 | 0.09 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .........................................................................................................................................................................................GCTTTCGGCTGAGGGGA................................................ | 17 | 2 | 13 | 0.08 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...................................GGTCTGAGTTGTAGCCA...................................................................................................................................................................................................... | 17 | 2 | 15 | 0.07 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..................................................................................................CGAGGAAGTTAAGAATTGG..................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ACTACCTCTGCCTGCC.......................................................................................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..................AGGTCGACTCATGCGTAGG..................................................................................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Generated: 04/23/2015 at 11:00 PM