ID:

dsi_19318

 Coordinate:

2r:5570878-5571090 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.1 -34.0 -34.0

Flybase annnotation

exon [2r_5569657_5570877_+]; CDS [2r_5569657_5570877_+]; CDS [2r_5571091_5571285_+]; exon [2r_5571091_5571285_+]; intron [2r_5570878_5571090_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCCCTGGTTACGGAGTCAGTGCGTCCGCAGCTGCGGATGACGGAGATCACGTGAGTTGACCATTTACGGCTTTTCGCTCAACCCACAATGCACAGATTTCCCGATCACTGCTCGGGATGGGGACATGGCATTCTGATTATCCTTTCGATTTTGTTCACATCCCAATCTGTTTCGAATCTCCCGGTCCTGCATCTGATCCAACACAACACCTGATCCATCGAACCTCCTGCACCGACACAACAACAACAACTACACCCGTCCAGACCCCCTGTGATTGCAACATCTAGTATGCCAAGTGTTTCCAGCGAACCGA
**************************************************((((((((........(((...((((..((........)).(((((((((((((.......))))))..((((..(((((...(((........)))....)).)))..)))))))))))..))))....)))(((.((((...((((.............))))............))))..)))..........))))).)))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.........................................................................................................................................................................................................................TCGAACCTCCTGCACCGACACAAC........................................................................ 24 0 1 1.00 1 1 0 0 0
.............................................................................................................GCTCGGGATGGAGACATGG......................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0
....................................................................................................................ATGTGGACATGGCATTGTG.................................................................................................................................................................................. 19 2 3 0.33 1 0 0 1 0
........................................................................................................................................................................................................................................................ACTACAACCGTCCATACCA.............................................. 19 3 9 0.33 3 0 0 3 0
......................................................................................................GATTACTGCTCGGGA.................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 1
............................................................................................................................................................................................................................................................CACCCGTCCAGTCCCACTGA......................................... 20 3 6 0.17 1 0 0 1 0
...............................TTCGGATGACGGAGA........................................................................................................................................................................................................................................................................... 15 1 18 0.06 1 0 0 0 1

Anti-sense strand reads

AGGGACCAATGCCTCAGTCACGCAGGCGTCGACGCCTACTGCCTCTAGTGCACTCAACTGGTAAATGCCGAAAAGCGAGTTGGGTGTTACGTGTCTAAAGGGCTAGTGACGAGCCCTACCCCTGTACCGTAAGACTAATAGGAAAGCTAAAACAAGTGTAGGGTTAGACAAAGCTTAGAGGGCCAGGACGTAGACTAGGTTGTGTTGTGGACTAGGTAGCTTGGAGGACGTGGCTGTGTTGTTGTTGTTGATGTGGGCAGGTCTGGGGGACACTAACGTTGTAGATCATACGGTTCACAAAGGTCGCTTGGCT
**************************************************((((((((........(((...((((..((........)).(((((((((((((.......))))))..((((..(((((...(((........)))....)).)))..)))))))))))..))))....)))(((.((((...((((.............))))............))))..)))..........))))).)))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
........................................................................AACCAAGTAGGGTGTTACGTG............................................................................................................................................................................................................................ 21 3 2 0.50 1 0 1 0 0 0 0 0
.........................................................................................................................................................................AAAGTTTAGAGGGACAGGA............................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0
.................ACACGCAGGCGTCGAAGCC..................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGCTTGGAGGCCGTG................................................................................. 15 1 8 0.25 2 0 0 2 0 0 0 0
.....................................................................................................................................................................................................................................................................................GTTGTAGATCTTACGGTTTAT............... 21 3 5 0.20 1 0 0 0 1 0 0 0
........................................................................................................................................................................CAAAGCTGAGACGGCAAGGA............................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0
.........TGCCTCAGCCACGCAAG............................................................................................................................................................................................................................................................................................... 17 2 8 0.13 1 0 1 0 0 0 0 0
.................ACACGCAGGCGTCGAAGCCA.................................................................................................................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0
...................ACGTAGGCGTCGAAGCCAAC.................................................................................................................................................................................................................................................................................. 20 3 19 0.11 2 1 0 0 0 1 0 0
..............................................................................................................................CCGTAAGAGTAATAGGTA......................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 1 0
...................ACGCAGGCGTCGAAGCCTTA.................................................................................................................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................ATTAACGATGTAGATCAT........................ 18 2 13 0.08 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................TGTTGTTGTTGTTGATGG........................................................... 18 1 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................AGTGACGAGCCCCTCC................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0
................................................................................................................................GTAAGACTAGTAAGAATGC...................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAACTAGGATGTGTTGT......................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1
.................ACACGTAGGCGTCGAAGCC..................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................GTTGTTGCTGATGGGGG........................................................ 17 2 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/23/2015 at 05:03 PM