dsi_19271

Name	Class	Family	Strand
(CAAAC)n	Simple_repeat	Simple_repeat	+

########################################################################################################################################################################################################################################################## CACGACGATCCCGCTTCCACTTCCACTTCCTCCTTCCTCGTCGCTCTTGCCATCGCCGTTGACTTTTTAACTTTCGCTTTTACTGTGTCCGGCGTACGCGTTCGATTGCTTTCGCTTTTCTCACACGAAAACAAACGAAGACCAAACCAAACCAAATCCAAGCCAAAACCAAAACCAAAACCACATCAAATTCTTTGCAGCGCGCCAAAAATAAGAGCAGCACTTGCCACCAAAATAAGCTGAACAAAAC ************************************************....((..(((...((((...(((.((((....((.((..((........((((.(((.(((((...........))))).))).)))).......))..)))).....)))).)))...)))).)))..................))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	GSM343915 embryo
...................................................................................................................................................................................................................................CACCGGAATAAGCTGAACAA...	20	2	1	1.00	1	0	1	0	0	0	0
.........................................................................TCGCTTTTACTGTGTCCGGCG............................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
.............................................CTTGCCATCGCCGTTGACG..........................................................................................................................................................................................	19	1	1	1.00	1	1	0	0	0	0	0
.............................................CTTGCCATCGCCGTTGACT..........................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0
..............................................................TATTTTAACTTTGGCTTTTACTG.....................................................................................................................................................................	23	3	2	0.50	1	0	0	1	0	0	0
............................................................................................................................................................................................AATTCTTTCGGGCGCGCCA...........................................	19	3	19	0.16	3	0	0	0	3	0	0
...............................................TGCCATCGGCGTGGACTT.........................................................................................................................................................................................	18	2	7	0.14	1	1	0	0	0	0	0
............................................................................................CGTACGCCTTAGACTGCTT...........................................................................................................................................	19	3	8	0.13	1	0	0	0	0	0	1
..............................................................TATTTTAACTTTGGCTTTTACT......................................................................................................................................................................	22	3	9	0.11	1	0	0	1	0	0	0
...........................................................TGACTGTTTAACTCTCG..............................................................................................................................................................................	17	2	11	0.09	1	0	0	0	0	1	0
...................................CCTCGTCGCTCGCGCCA......................................................................................................................................................................................................	17	2	15	0.07	1	0	0	0	1	0	0
............................................................................................CGTACGGGTTGGATTGTT............................................................................................................................................	18	3	20	0.05	1	0	0	0	0	1	0
...................................CCCCGTCGCTCGTGCCA......................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	1	0	0

GTGCTGCTAGGGCGAAGGTGAAGGTGAAGGAGGAAGGAGCAGCGAGAACGGTAGCGGCAACTGAAAAATTGAAAGCGAAAATGACACAGGCCGCATGCGCAAGCTAACGAAAGCGAAAAGAGTGTGCTTTTGTTTGCTTCTGGTTTGGTTTGGTTTAGGTTCGGTTTTGGTTTTGGTTTTGGTGTAGTTTAAGAAACGTCGCGCGGTTTTTATTCTCGTCGTGAACGGTGGTTTTATTCGACTTGTTTTG ************************************************....((..(((...((((...(((.((((....((.((..((........((((.(((.(((((...........))))).))).)))).......))..)))).....)))).)))...)))).)))..................))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M053 female body	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	M023 head
....................................................................................................................................TTTGCTTCTGGTTTTGTTTAGT................................................................................................	22	2	2	1.00	2	2	0	0	0	0	0	0
...........................................................ACTGAAAAATTGAAA................................................................................................................................................................................	15	0	2	0.50	1	0	1	0	0	0	0	0
.......TAGGGCGGAGGTGAAGGTG................................................................................................................................................................................................................................	19	1	3	0.33	1	1	0	0	0	0	0	0
.............................................................................................................................................GGATTGCTTTGGTTTAGGT..........................................................................................	19	2	9	0.22	2	2	0	0	0	0	0	0
.................................AAGGAACAGCGAGAAC.........................................................................................................................................................................................................	16	1	6	0.17	1	0	0	1	0	0	0	0
..........................................................................................................................................................TTAGGTTCGGTTTTGGTTGA............................................................................	20	2	7	0.14	1	0	0	0	1	0	0	0
................................................................................................................................................GGGGTTTGGTTTAGGTTCGG......................................................................................	20	2	8	0.13	1	0	0	0	0	1	0	0
GTGCCGCTAGGGTGAAG.........................................................................................................................................................................................................................................	17	2	20	0.10	2	0	0	0	0	0	2	0
..............................................................GAAAAGTTGAAAGCGA............................................................................................................................................................................	16	1	13	0.08	1	0	0	1	0	0	0	0
............................................................................................................................................................AGGTTCGGTTTTGCTTAT............................................................................	18	2	20	0.05	1	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:10810850-10811099 +	dsi_19271	CACGACGATCCCGCTTCCAC--TT------CCA--------------CTT-CCTCCT----T---CCTCGT---CGCTC------------TT----GCCA---------------TCGCCGTTGACTTTTTAACTTTCGCTTTTACT---------GTGTC------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCTTT-----------TCTCACA--C--GAAAACAAACGAAGAC---------------------------------------C-----AAACCA--AA---CCAAATCCAAGCCAAAA------CCAAAA-------------------------CCAAAACCACATCAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGCACTT-GCCACC-AAA------ATAA---GCTGA------------------------------------------ACAAAAC
droSec2	scaffold_1:7615535-7615789 +		CACGACGATCCCGCTTCCAC--TT------CCA--------------CTT-CCTCCT----T---CCTCGT---CGCTC------------TT----GCCA---------------TCGCAGTTGACTTTTTAACTTTCGCTTTTACT---------GTGTC------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCTTT-----------TCTCACA--C--GAAAACAACCGAAAAC---------------------------------------CGAAACAAACCA--AA---CAAAATCCAAACCAAAA------CCAAAA-------------------------CCAAAACCACATCAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGCACTT-GCCACC-AAA------ATAA---GCTGA------------------------------------------ACAAAAC
dm3	chr2R:10107923-10108164 +		CACGTCGATCCCGCTTCCAC--TT------CCA--------------CTT-CCT-----C------CTCGT---CGCTC------------TT----GCCA---------------TCGCCGTTGACTTTTTAACTTTCGCTTTTACT---------GTGT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCTTT-----------TCTCATA--C--GAAAACAAACGATAAC---------------------------------------CGAA---------------CCAAATCAAAACCAAAA------CCAAAA-------------------------CCAAGACCACATCAAATTCTTTGCAGCG--CGCCAAAAATAAAAGAGCAGCACTT-GCCACC-AAA------ATAA---GCTGA------------------------------------------ACAAAAC
droEre2	scaffold_4845:15735431-15735630 -		CGCGGCGATCCCGCTTCCTCGT---------------------TGTCT-------------------TTGC---CGCTG------------TT----GCCT---------------TTGTCGTTGACTTTTTAACTTTCGCTTTTACT---------GTGT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCTTT-----------TCTCACA--C--GAAAACAA----------ACCAAA-------------------------------------------------------------------------------------------------------------CCCACACCAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGCAGTT-GCCACC-AAA------TTAA---GCTGC------------------------------------------CTGAAAC
droYak3	2R:10044742-10044963 +		CACGTCGATCCCGCTTCCTCG--T-------------------CGCCT-TTG--CCGCCG----------TTGCCGCTG------------TT----GCCT---------------TCGTCGCTGACTTTTTAACTTTCGCTTTTACT---------GTGT-------CGGCA----A---------------------------TACGCG------TTCGA-TTGCTTTCGCTTT-----------TCTCACA--C--GAAAACCA-CGAAAACAAACCAAA-------------------------------------------------------------------------------------------------------------CCCACATCAAATTCTTTGCAGCGCGCGCCAAAAATA--AGAGCAGCAGTTGGCCACC-AAA------ATAA---GCTGC------------------------------------------CTCAAAC
droEug1	scf7180000409462:2736676-2736837 -		CACGGCGATCCCGCTTCCTCGT---------------------T-----------------------------------------------------GCCG---------------TTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACA--CC----------------------AGACAC------------------------------------------------------------------A-----------------------------------------C-CATCAAATTCTTTGCAGCG--CGCCAAAAATA--AGATCAGAAGTT-GCCACC-AAT------ATAA---------------------------------------------------------
droBia1	scf7180000301506:3157668-3157843 -		CTCGGCGATCCCGCTTCCTCGT---------------------T-----------------------------------------------------GCCG---------------CTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCA---------------------------GACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACA--CC--CCTCACC-------------AAAA-----------------------------------------------------------------------------------------------------------------AACAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGAAGTT-GCCACCAAAA------ATAA---TC-CC------------------------------------------CATAGTC
droTak1	scf7180000414111:10048-10219 +		CACGGCGATCCCGCTTCCTCGT---------------------TGCTT------------TTT--C--CGT---TGC-G------------TT----GCCT---------------TTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCGTT-------------------------TACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACACACTCGA-------------------------------------------------------------------------------------------------------------------------------------------AAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGAA-------------A------ATAA---TC-C--------------------------------------------CAAAAT
droEle1	scf7180000491349:768007-768190 -		CACGCCGATCCCGCTTCCTCGT---------------------TGCCGTT-GCT-----GTTG---C-CGT---TGCCT------------TT----GCCT---------------TTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACA--CC----------------------AGACA-------------------------------------------------------------------------------------------------------------CACATCAAATTCTTTGCAGCG--CGCCAAAAATA-CAGAGCAGAAGTT-GCCAAT-AAT-----------------------------------------------------------------AT
droRho1	scf7180000777200:424099-424270 +		CACGCCGATCCCGCTTCCTCGT---------------------TG-------------------------------CCG------------TT----GCCG---------------TTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACA--CC----------------------AGACA-------------------------------------------------------------------------------------------------------------CACATCAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGAAGTT-GCCA------------ATAA---TC-C-------------------------------------------AATAACC
droFic1	scf7180000453948:325023-325203 -		CACGCCGATCCCGCTTCCTCGT---------------------TGCCG-------------------------------------------TTTC--GCCG---------------TTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACA--CC----------------------AGACCC------------------------------------------------------------------A-----------------------------------------CACATCAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGAAGTT-GCCACA-AAA------ATA-----CCCA------------------------------------------ATAATAC
droKik1	scf7180000302366:794915-795091 +		CGCGTCG-------------------------------------------------------------------------------------------CC------------------G-CGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CGGCGGCGCG---------------------------TACGCGCGTTG-TTCGATTTGCTTTCGCT-T-----------TCTCGAA--A------A-----------------AACA------------------------------------------------C---------AAAA---ATACA-------AA---------ATAAA---------TATAAATAAAATCAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGAACTTTACCTCT-AAA-------------------------------------------------------------AAAAAC
droAna3	scaffold_13266:5816489-5816686 -		CACGTCGATCCTACTTGCTTG--T--------------------GCTTTT-GGT-----GTTG---C-TGT---TGCTA------TTGCTATT-GCTGCTATTGCTGCTGTTGCTGCCACTGTTGACTT-TTAACTTTCGCTTTTACT--GTGTGTC--GT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACA--CC----------------------AGA-------------------------------------------------------------------------------------------------------------------ATAAATTCTTTGCAGCG--CGCCAAAAATA--AG------------CCACC-GA-G----------------C------------------------------------------CACA--A
droBip1	scf7180000396372:431514-431691 -		CACGTCGATCCTACTTGCTTG--T--------------------GCTTTT-GGT-----GTTG---C-TAT---TGCTG------------TT----GCTG---------------CCACTGTTGACTT-TTAACTTTCGCTTTTACTCTGT-----GTGT-------CGGCA--ACT---------------------------TACGCG------CTTGA-TTGCTTTCGTT-T-----------TCTCACA--CC----------------------CGA-------------------------------------------------------------------------------------------------------------------ATAAATTCTTTGCAGCG--CGCCAAAAATA--AG------------CCACC-GA-GCACAA-------GCT---------------------------------------------------
dp5	3:17358018-17358253 +		CAGGCCGATCCTGCTTCTTC--TTCTTCTGTCCGTCCCGCACG------TTG--TTGCTG----------CTGCTGTTG------------GT----GCTG---------------CTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCGTCCCCGCGACGCGCCACCGCCACCGCCACCGCC----CCGCCGC-TTACTTTCGTT-T-----------TCTCACA--CC----------------------ACAC-----------------------------------------------------------------------------------------------------------------ACAAAATTCTTTGCAGCG--CGCCAAAAATA--AGAACAGAACTCTG-TTTT-AGA------ACAC---TCGTA------------------------------------------ATCGCAC
droPer2	scaffold_31:434132-434361 -		CAGGCCGATCCTGCTTCTTC--TTCTTCTGTCCGTCCCGCACG------TTG--TTGCTG----------CTGCTGTTG------------GT----GCTG---------------CTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCGTCCCCGCGACGCGCCACCG------CCACCGCC----CCGCCGC-TTACTTTCGTT-T-----------TCTCACA--CC----------------------ACAC-----------------------------------------------------------------------------------------------------------------ACAAAATTCTTTGCAGCG--CGCCAAAAATA--AGAACAGAACTCTG-TTTT-AGA------ACAC---TCGTA------------------------------------------ATCGCAC
droWil2	scf2_1100000004511:6247705-6247825 +		AACAGCAACCAAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACA--AC----------------------AAAT----------------------------------------TAAAAA---TATTTTGCAACAACAAA------GG------------------------------------CAAATGAAAAGCTCTCAACAG--CAGCAACAACA--ACAACAGCATCA--GCA---GCA------CCT-GCATCAAC------------------------------------------AACAACA
droVir3	scaffold_12928:2273369-2273597 -		TCT--CAGTGCCGCT--------G------CCA--------------GCG-TCGCAG----C---CAGCGT---CGCTGTTGCCGACGCCGAT----GCCG---------------ATGCCG---ACGC---CGATGCCGATGCCGAC---------GTCG-------TG-----GCC---------------------------AACGCA------GCCGC-GTGCTTTCAACTT-----------TACAACA--AC--AAGAAAG-------------------------------------------------------------------------------------GCA-------AA---------------------------------ACAAAAACAAATGCAAGG--CGAATAA-------G------------AAAAA-GA-AAACAG-------AACATATTCACGTTGCAAATTTTGATTATTTGTTGATGTTCGGCGCAACTTTAT
droMoj3	scaffold_6496:11224053-11224311 -		CGTCTTGCGTTCGGCTCGGT---------------------------T------------TCT--A--AAT---TGAGG------------C--------------------------GTTTTTTACAG-TTAACTTTCGCTTTTTTT--TTGTGCTGTGC-------TG-----CGG---------------------------T-----------------TCACGTTCGCT-T-----------TCTCGCA--TA----------------------AGAAATTCTTTGCACTGCCCACGACTAGGCGGCCAGAAATAGATCAAAAAATAC---------AAAA---ACAAACAAGCAAATACGACCACAAGAACTAGAGGCGC---GACCGGGTTCTAAT---TTG--------AACGAAAAAA--ACTCAAATACT----CAAC-GAA------TTG-AAAGCTGC------------------------------------------AACAGAC
droGri2	scaffold_15110:14320560-14320787 -		CAACGCAATCGCAGTTCCCT--CT------CTC--------------CCT-CCT-----CCCCCTCCCCAT---CCCAC------------TTTGGACCCCTCACCCGCCTCGTTGGGCAAGTTGCCTT-CA---CATCGATTTTCAT---------GTGACTTGTGTAG------------------------------------ACGTG------TTTGG-TTTTTATTGATTTTCACTTGATTCTCTCACA--TC--CACATC--------------CCAT-----------------------------------------------------------------------------------------------------------------GGGCAA-CCACAGCAGCA----GCAGCAACA--GCAACAGCAGAA--GCA---GCA------ACA-GCAGAAGC-------------------------------------------AGCAAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CACGACGATCCCGCTTCCAC--TT------CCA--------------CTT-CCTCCT----T---CCTCGT---CGCTC------------TT----GCCA---------------TCGCCGTTGACTTTTTAACTTTCGCTTTTACT---------GTGTC------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCTTT-----------TCTCACA--C--GAAAACAAACGAAGAC---------------------------------------C-----AAACCA--AA---CCAAATCCAAGCCAAAA------CCAAAA-------------------------CCAAAACCACATCAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGCACTT-GCCACC-AAA------ATAA---GCTGA------------------------------------------ACAAAAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................TCGCTTTTACT---------GTGTC------CG-----GCG---------------------------...........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................C------------TT----GCCA---------------TCGCCGTTGACG........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................C------------TT----GCCA---------------TCGCCGTTGACT........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CACGACGATCCCGCTTCCAC--TT------CCA--------------CTT-CCTCCT----T---CCTCGT---CGCTC------------TT----GCCA---------------TCGCAGTTGACTTTTTAACTTTCGCTTTTACT---------GTGTC------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCTTT-----------TCTCACA--C--GAAAACAACCGAAAAC---------------------------------------CGAAACAAACCA--AA---CAAAATCCAAACCAAAA------CCAAAA-------------------------CCAAAACCACATCAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGCACTT-GCCACC-AAA------ATAA---GCTGA------------------------------------------ACAAAAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................................................................................................................................................................................................................................................................A-------------------------CCAAAACCACATCAAATTCTTTGCAG...........................................................................................................	27	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAAATA--AGAGCAGCA.................................................................................	19	1	1.00	1	0	0	1	0
.............................................................................................................................................................GTGTC------CG-----GCG---------------------------TACGCG------TTCGA-T........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
....................................................................................................A---------------TCGCAGTTGACTTTTTAACTTTCG............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATA--AGAGCAGCACTT-GC...........................................................................	20	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................CAAACCAAAA------CCAAAA-------------------------CCA..................................................................................................................................	19	3	0.33	1	0	0	1	0

dm3

CACGTCGATCCCGCTTCCAC--TT------CCA--------------CTT-CCT-----C------CTCGT---CGCTC------------TT----GCCA---------------TCGCCGTTGACTTTTTAACTTTCGCTTTTACT---------GTGT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCTTT-----------TCTCATA--C--GAAAACAAACGATAAC---------------------------------------CGAA---------------CCAAATCAAAACCAAAA------CCAAAA-------------------------CCAAGACCACATCAAATTCTTTGCAGCG--CGCCAAAAATAAAAGAGCAGCACTT-GCCACC-AAA------ATAA---GCTGA------------------------------------------ACAAAAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................T----GCCA---------------TCGCCGTTGACTT.......................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GACCACATCAAATTCTTTGCAG...........................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCAGCACTT-GCCACC-AA....................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................A------CCAAAA-------------------------CCAAGACCACAT.........................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................GTGT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGC.....................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TTTACT---------GTGT-------CG-----GCG---------------------------TACGC......................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CTC------------TT----GCCA---------------TCGCCGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CA--------------CTT-CCT-----C------CTCGT---CGCTC------------TT----GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTT-GCCACC-AAA------ATAA---GCT...................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................ACGCG------TTCGA-TTGCTTTC.................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AACTTTCGCTTTTACT---------GTGT-------C...............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AC--TT------CCA--------------CTT-CCT-----C------CTCGT---..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CGCTTCCAC--TT------CCA--------------CTT-CCT-----C------CT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT-GCCACC-AAA------ATAA---GCTGA------------------------------------------.......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAAATAAAAGAGCA....................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CGCGGCGATCCCGCTTCCTCGT---------------------TGTCT-------------------TTGC---CGCTG------------TT----GCCT---------------TTGTCGTTGACTTTTTAACTTTCGCTTTTACT---------GTGT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCTTT-----------TCTCACA--C--GAAAACAA----------ACCAAA-------------------------------------------------------------------------------------------------------------CCCACACCAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGCAGTT-GCCACC-AAA------TTAA---GCTGC------------------------------------------CTGAAAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............TTCCTCGT---------------------TGTCT-------------------TTGC---CGCTG------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
......GATCCCGCTTCCTCGT---------------------TGTCT-------------------TTGC---CGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0

droYak3

CACGTCGATCCCGCTTCCTCG--T-------------------CGCCT-TTG--CCGCCG----------TTGCCGCTG------------TT----GCCT---------------TCGTCGCTGACTTTTTAACTTTCGCTTTTACT---------GTGT-------CGGCA----A---------------------------TACGCG------TTCGA-TTGCTTTCGCTTT-----------TCTCACA--C--GAAAACCA-CGAAAACAAACCAAA-------------------------------------------------------------------------------------------------------------CCCACATCAAATTCTTTGCAGCGCGCGCCAAAAATA--AGAGCAGCAGTTGGCCACC-AAA------ATAA---GCTGC------------------------------------------CTCAAAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................G----------TTGCCGCTG------------TT----GCCT---------------TCGTCGCC............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGGCCACC-AAA------ATAA---GCT...................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................TTAACTTTCGCTTTTACT---------GTGT-------C...............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATA--AGAGCAGCAGTTGGCCACC-......................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................G--CCGCCG----------TTGCCGCTG------------TT----GCCT---------------TCGTC...............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATA--AGAGCAGCAGTTGG............................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0

droEug1

CACGGCGATCCCGCTTCCTCGT---------------------T-----------------------------------------------------GCCG---------------TTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACA--CC----------------------AGACAC------------------------------------------------------------------A-----------------------------------------C-CATCAAATTCTTTGCAGCG--CGCCAAAAATA--AGATCAGAAGTT-GCCACC-AAT------ATAA---------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTCGGCGATCCCGCTTCCTCGT---------------------T-----------------------------------------------------GCCG---------------CTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCA---------------------------GACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACA--CC--CCTCACC-------------AAAA-----------------------------------------------------------------------------------------------------------------AACAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGAAGTT-GCCACCAAAA------ATAA---TC-CC------------------------------------------CATAGTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CACGGCGATCCCGCTTCCTCGT---------------------TGCTT------------TTT--C--CGT---TGC-G------------TT----GCCT---------------TTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCGTT-------------------------TACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACACACTCGA-------------------------------------------------------------------------------------------------------------------------------------------AAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGAA-------------A------ATAA---TC-C--------------------------------------------CAAAAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CACGCCGATCCCGCTTCCTCGT---------------------TGCCGTT-GCT-----GTTG---C-CGT---TGCCT------------TT----GCCT---------------TTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACA--CC----------------------AGACA-------------------------------------------------------------------------------------------------------------CACATCAAATTCTTTGCAGCG--CGCCAAAAATA-CAGAGCAGAAGTT-GCCAAT-AAT-----------------------------------------------------------------AT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CACGCCGATCCCGCTTCCTCGT---------------------TG-------------------------------CCG------------TT----GCCG---------------TTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACA--CC----------------------AGACA-------------------------------------------------------------------------------------------------------------CACATCAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGAAGTT-GCCA------------ATAA---TC-C-------------------------------------------AATAACC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CACGCCGATCCCGCTTCCTCGT---------------------TGCCG-------------------------------------------TTTC--GCCG---------------TTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACA--CC----------------------AGACCC------------------------------------------------------------------A-----------------------------------------CACATCAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGAAGTT-GCCACA-AAA------ATA-----CCCA------------------------------------------ATAATAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGCGTCG-------------------------------------------------------------------------------------------CC------------------G-CGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CGGCGGCGCG---------------------------TACGCGCGTTG-TTCGATTTGCTTTCGCT-T-----------TCTCGAA--A------A-----------------AACA------------------------------------------------C---------AAAA---ATACA-------AA---------ATAAA---------TATAAATAAAATCAAATTCTTTGCAGCG--CGCCAAAAATA--AGAGCAGAACTTTACCTCT-AAA-------------------------------------------------------------AAAAAC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CACGTCGATCCTACTTGCTTG--T--------------------GCTTTT-GGT-----GTTG---C-TGT---TGCTA------TTGCTATT-GCTGCTATTGCTGCTGTTGCTGCCACTGTTGACTT-TTAACTTTCGCTTTTACT--GTGTGTC--GT-------CG-----GCG---------------------------TACGCG------TTCGA-TTGCTTTCGCT-T-----------TCTCACA--CC----------------------AGA-------------------------------------------------------------------------------------------------------------------ATAAATTCTTTGCAGCG--CGCCAAAAATA--AG------------CCACC-GA-G----------------C------------------------------------------CACA--A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................TTTCGCTTTTACT--GTGTGTC--GT-------CG-----GC.......................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
.....................................................................GT---TGCTA------TTGCTATT-GCTGCTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................CGCG------TTCGA-TTGCTTTCGCT-T-----------.................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................CC----------------------AGA-------------------------------------------------------------------------------------------------------------------ATAAATTCTTTGCAGCG--C......................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...............TGCTTG--T--------------------GCTTTT-GGT-----GTTG---C-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
.ACGTCGATCCTACTTGCTTG--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................TGCTTTCGCT-T-----------TCTCACA--CC----------------------................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.............CTTGCTTG--T--------------------GCTTTT-GGT-----GTTG---C-C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
................................................................................................................................T-TTAACTTTCGCTTTTACT--GTGTGTC--GT-------................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0
..............................................................................A------TTGCTATT-GCTGCTATTGCTGC............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................GCTTTTACT--GTGTGTC--GT-------CG-----GC.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................CTCACA--CC----------------------AGA-------------------------------------------------------------------------------------------------------------------ATAAATTCTTTGCAGC..........................................................................................................	27	1	1.00	1	0	1	0	0	0	0
................................................................................................TGCTATTGCTGCTGTTGCTGCCACTGT.............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................GCT-T-----------TCTCACA--CC----------------------AGA-------------------------------------------------------------------------------------------------------------------ATAAATTC..................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.............CTTGCTTG--T--------------------GCTTTT-GGT-----GTTG---C-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...........................................................GTTG---C-TGT---TGCTA------TTGCTATT-..........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0

droBip1

CACGTCGATCCTACTTGCTTG--T--------------------GCTTTT-GGT-----GTTG---C-TAT---TGCTG------------TT----GCTG---------------CCACTGTTGACTT-TTAACTTTCGCTTTTACTCTGT-----GTGT-------CGGCA--ACT---------------------------TACGCG------CTTGA-TTGCTTTCGTT-T-----------TCTCACA--CC----------------------CGA-------------------------------------------------------------------------------------------------------------------ATAAATTCTTTGCAGCG--CGCCAAAAATA--AG------------CCACC-GA-GCACAA-------GCT---------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAGGCCGATCCTGCTTCTTC--TTCTTCTGTCCGTCCCGCACG------TTG--TTGCTG----------CTGCTGTTG------------GT----GCTG---------------CTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCGTCCCCGCGACGCGCCACCGCCACCGCCACCGCC----CCGCCGC-TTACTTTCGTT-T-----------TCTCACA--CC----------------------ACAC-----------------------------------------------------------------------------------------------------------------ACAAAATTCTTTGCAGCG--CGCCAAAAATA--AGAACAGAACTCTG-TTTT-AGA------ACAC---TCGTA------------------------------------------ATCGCAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................TCCCGCACG------TTG--TTGCTG----------CTGCTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................GCTTTTACT---------GTGT-------CG-----GCGTCCCC.................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................CCCGCGACGCGCCACCGCCAC...............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

CAGGCCGATCCTGCTTCTTC--TTCTTCTGTCCGTCCCGCACG------TTG--TTGCTG----------CTGCTGTTG------------GT----GCTG---------------CTGCCGTTGACTT-TTAACTTTCGCTTTTACT---------GTGT-------CG-----GCGTCCCCGCGACGCGCCACCG------CCACCGCC----CCGCCGC-TTACTTTCGTT-T-----------TCTCACA--CC----------------------ACAC-----------------------------------------------------------------------------------------------------------------ACAAAATTCTTTGCAGCG--CGCCAAAAATA--AGAACAGAACTCTG-TTTT-AGA------ACAC---TCGTA------------------------------------------ATCGCAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATA--AGAACAGAACTCTG-T..........................................................................	18	1	4.00	4	4	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATA--AGAACAGAACTCTG-T..........................................................................	22	1	4.00	4	4	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAAAATA--AGAACAGAACTCTG-T..........................................................................	26	1	4.00	4	4	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATA--AGAACAGAACTCTG-T..........................................................................	19	1	4.00	4	4	0	0	0	0	0
........................................................................................................................................TTCGCTTTTACT---------GTGT-------CG-----GC.......................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	4	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAACTCTG-TTTT-AGA------ACAC---TC....................................................	24	1	3.00	3	3	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATA--AGAACAGAACTCTG-T..........................................................................	24	1	3.00	3	3	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGAACTCTG-TTTT-AGA------ACAC---T.....................................................	25	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAATA--AGAACAGAACTCTG-T..........................................................................	20	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAATA--AGAACAGAACTCTG-T..........................................................................	23	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-AGA------ACAC---TCGTA------------------------------------------ATCGCAC	22	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATA--AGAACAGAACTCT.............................................................................	20	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................TTACT---------GTGT-------CG-----GCGTCCCC.................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAATA--AGAACAGAACTCT.............................................................................	18	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAAAATA--AGAACAGAACTCTG-G..........................................................................	26	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAAAATA--AGAACAGAACTCTG-...........................................................................	25	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................TT-TTAACTTTCGCTTTTACT---------GTGT-------C...............................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTCTG-TTTT-AGA------AC...........................................................	19	1	2.00	2	2	0	0	0	0	0
.................................GTCCCGCACG------TTG--TTGCTG----------CTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................AACTTTCGCTTTTACT---------GTGT-------C...............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATA--AGAACAGAACTCTG-T..........................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAATA--AGAACAGAACTCTG-G..........................................................................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAACTCTG-TTTT-AGA------ACAC---T.....................................................	23	1	1.00	1	1	0	0	0	0	0
......GATCCTGCTTCTTC--TTCTTCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................GTTGACTT-TTAACTTTCGCT..........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................CTTTCGCTTTTACT---------GTGT-------CG-----GC.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGAACTCTG-TTTT-AGA------ACAC---TC....................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAAAATA--AGAACAGAACTCT.............................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATA--AGAACAGAACTCTG-C..........................................................................	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................TGCCGTTGACTT-TTAACTTTCGCT..........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTG-TTTT-AGA------ACAC---TCGTA------------------------------------------ATCGCAC	28	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAATA--AGAACAGAACTCTG-TT.........................................................................	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................CGCTTTTACT---------GTGT-------CG-----GC.......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAATA--AGAACAGAACTCG.............................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATA--AGAACAGAACTCTG-G..........................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTCTG-TTTT-AGA------ACAC---T.....................................................	22	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATA--AGAACAGAACTCT.............................................................................	19	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TTTT-AGA------ACAC---TCGTA------------------------------------------ATCGCAC	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATA--AGAACAGAACTCTG-TTTT-......................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATA--AGAACAGAACTCTG-C..........................................................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATA--AGAACAGAACTCTG-G..........................................................................	19	2	0.50	1	1	0	0	0	0	0

droWil2

AACAGCAACCAAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACA--AC----------------------AAAT----------------------------------------TAAAAA---TATTTTGCAACAACAAA------GG------------------------------------CAAATGAAAAGCTCTCAACAG--CAGCAACAACA--ACAACAGCATCA--GCA---GCA------CCT-GCATCAAC------------------------------------------AACAACA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...AGCAACCAAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACA--AC----------------------AAAT----------------------------------------....................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--ACAACAGCATCA--GC..........................................................................	18	20	0.10	2	0	0	0	2	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................A--ACAACAGCATCA--GCA---GC....................................................................	18	16	0.06	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA--ACAACAGCATCA--GC..........................................................................	19	17	0.06	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACAG--CAGCAACAACA--ACAA......................................................................................	19	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--ACAACAGCATCA--GCA---......................................................................	19	20	0.05	1	0	0	0	1	0

droVir3

TCT--CAGTGCCGCT--------G------CCA--------------GCG-TCGCAG----C---CAGCGT---CGCTGTTGCCGACGCCGAT----GCCG---------------ATGCCG---ACGC---CGATGCCGATGCCGAC---------GTCG-------TG-----GCC---------------------------AACGCA------GCCGC-GTGCTTTCAACTT-----------TACAACA--AC--AAGAAAG-------------------------------------------------------------------------------------GCA-------AA---------------------------------ACAAAAACAAATGCAAGG--CGAATAA-------G------------AAAAA-GA-AAACAG-------AACATATTCACGTTGCAAATTTTGATTATTTGTTGATGTTCGGCGCAACTTTAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......GTGCCGCT--------G------CCA--------------GCG-TCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................GAT----GCCG---------------ATGCCG---ACGC---CG..................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGTCTTGCGTTCGGCTCGGT---------------------------T------------TCT--A--AAT---TGAGG------------C--------------------------GTTTTTTACAG-TTAACTTTCGCTTTTTTT--TTGTGCTGTGC-------TG-----CGG---------------------------T-----------------TCACGTTCGCT-T-----------TCTCGCA--TA----------------------AGAAATTCTTTGCACTGCCCACGACTAGGCGGCCAGAAATAGATCAAAAAATAC---------AAAA---ACAAACAAGCAAATACGACCACAAGAACTAGAGGCGC---GACCGGGTTCTAAT---TTG--------AACGAAAAAA--ACTCAAATACT----CAAC-GAA------TTG-AAAGCTGC------------------------------------------AACAGAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................GAACTAGAGGCGC---GACCGGGTT.........................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...CTTGCGTTCGGCTCGGT---------------------------T------------TCT--A--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droGri2

CAACGCAATCGCAGTTCCCT--CT------CTC--------------CCT-CCT-----CCCCCTCCCCAT---CCCAC------------TTTGGACCCCTCACCCGCCTCGTTGGGCAAGTTGCCTT-CA---CATCGATTTTCAT---------GTGACTTGTGTAG------------------------------------ACGTG------TTTGG-TTTTTATTGATTTTCACTTGATTCTCTCACA--TC--CACATC--------------CCAT-----------------------------------------------------------------------------------------------------------------GGGCAA-CCACAGCAGCA----GCAGCAACA--GCAACAGCAGAA--GCA---GCA------ACA-GCAGAAGC-------------------------------------------AGCAAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_19271

2r:10810900-10811049 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-17.3	-16.7	-16.5