ID:

dsi_19263

 Coordinate:

3l:7934803-7934864 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7934665_7934802_-]; exon [3l_7934310_7934802_-]; CDS [3l_7934865_7936486_-]; exon [3l_7934865_7936486_-]; intron [3l_7934803_7934864_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------##################################################
CCAGACCGCGTCGTTGTCTAGTCATATGTGGCAATTTTGAAGATCTAAAAGTCAGTATCCAGATTTAATTGATTTCAAACATGTTTTTAATTAACTCTTCTTAATTTTGTAGTCTGTGGAAATGTGGCGTAACCTTCTCGATGATGCTCGCAAGAGGAAAGT
**************************************************..........(((.((((((((...((....))...)))))))).)))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
......................................................................................................AATTTTGAAGTCGGTGGAAAT....................................... 21 2 3 1.33 4 0 0 4 0 0 0 0 0 0
................................................................................................................TCTGTGGAAATGTGGCGTAACCTTC......................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................CGTAACCTTCTCGATGAT................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................TCGATGATGCTCGCAAGAGGA.... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......CGCGTCGTTGTCTAGTCATATGTGGCA................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................TCTTGATTTTGTAGTCTGTGGA.......................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................................TAAAATCTGTGGAAATGTGGCGTAACC............................ 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................TTCTTAATTTTGTGGTCTGTGGA.......................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0
..........................................................................................................TTGTAGTCTGTAGAA......................................... 15 1 13 0.62 8 0 8 0 0 0 0 0 0 0
............................TTGCACTTTAGAAGATCTAAAAG............................................................................................................... 23 3 3 0.33 1 0 0 0 1 0 0 0 0 0
................................................................................................................TCTGTGCAAATGTGGCCT................................ 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0
......................................................................................................AATTTTGAAGTCGGTGGAAATT...................................... 22 3 6 0.17 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................CTTCTGGATGATGCTCGGC.......... 19 3 20 0.15 3 0 0 0 0 2 1 0 0 0
..........................................................................................................TTGTAGTCTGTAGAAG........................................ 16 2 20 0.10 2 0 2 0 0 0 0 0 0 0
..........................................................................................................TTGTAGTCTGTAGAAGCGT..................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 1 0
........CGTCGCTGTCTAGTGATA........................................................................................................................................ 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0
.................................................................................................................CGGTGGACATGTGGCTTAA.............................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
........................................................................................................TATTGTAGTCTTTGGAA......................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GGTCTGGCGCAGCAACAGATCAGTATACACCGTTAAAACTTCTAGATTTTCAGTCATAGGTCTAAATTAACTAAAGTTTGTACAAAAATTAATTGAGAAGAATTAAAACATCAGACACCTTTACACCGCATTGGAAGAGCTACTACGAGCGTTCTCCTTTCA
**************************************************..........(((.((((((((...((....))...)))))))).)))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................................................AGAGCTACTACGAGCGTTCTCCTTTC. 26 0 1 1.00 1 0 0 1 0 0
.................GATCAGTATACACCGTTAA.............................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
...............CAGATCAGTATACACCGT................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0
..............................................................................................GAGAAGAATTAAAACATCAGACACCTT......................................... 27 0 1 1.00 1 0 0 0 1 0
...................................................................................AAAAAATTATTGAGAAGAAT........................................................... 20 2 4 0.25 1 0 0 0 0 1
GGGCTGGCGCAGCTAGAGA............................................................................................................................................... 19 3 12 0.08 1 1 0 0 0 0

Generated: 04/24/2015 at 10:33 AM