ID:

dsi_19210

Coordinate:

3r:4359406-4359456 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_4359146_4359405_-]; exon [3r_4359107_4359405_-]; CDS [3r_4359457_4359884_-]; exon [3r_4359457_4359884_-]; intron [3r_4359406_4359456_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------################################################## GGATGATGCGGAGTACTACAAGGAGGAAGTCGGCGAGGAACCAGACGAAGGTGAGTTTTGCTACATGCTGCGAAGAACATAAACTATTGTTTCCTTTGCAGAACTCTTCAAAATGGAAGCGAAGTCCTCCCGAAAGCGGCCTAGTTTGGGC ************************************************.................((.(((((((((........))))..))))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M023 head	M024 male body	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
...................AAGGAGGAAGTCGGCGAGGAAC..............................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0
............GTACTACAAGGAGGAAGTCGGCGAGGA................................................................................................................	27	0	1	1.00	1	0	0	0	1	0	0
...............................................................................................ACGAAGAACTCTTCAAAATGGA..................................	22	3	1	1.00	1	0	0	1	0	0	0
.............TACTACAAGGAGGAAGTCGGCGAGGAA...............................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0
.................................................................................................GAAGAACTCTTCAAAATGGAAGCGAAG...........................	27	1	1	1.00	1	1	0	0	0	0	0
.GAAGATGCGGAGTAC.......................................................................................................................................	15	1	8	0.13	1	0	0	0	0	1	0
.....................................GAACCAGACGATGCTGA.................................................................................................	17	2	20	0.05	1	0	0	0	0	0	1

Anti-sense strand reads

CCTACTACGCCTCATGATGTTCCTCCTTCAGCCGCTCCTTGGTCTGCTTCCACTCAAAACGATGTACGACGCTTCTTGTATTTGATAACAAAGGAAACGTCTTGAGAAGTTTTACCTTCGCTTCAGGAGGGCTTTCGCCGGATCAAACCCG ************************************************.................((.(((((((((........))))..))))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M023 head
.......................................TGGTCTGCTTCCACTCAAAACGAT........................................................................................	24	0	1	1.00	1	0	1	0	0	0
....................................................................................................................TTCGCTGCAGGAGGGCTACCGC.............	22	3	1	1.00	1	1	0	0	0	0
.....................................................................................................TTGAGCAGTTTTACCT..................................	16	1	5	1.00	5	1	3	1	0	0
......................................................................................................TGAGCAGTTTTACCGTCGCTC............................	21	3	6	0.17	1	1	0	0	0	0
.....................................................................................................TTGAGAAGTTTTACCG..................................	16	1	7	0.14	1	1	0	0	0	0
...................................................................................................................CTTCGCTGCAGGATGG....................	16	2	9	0.11	1	0	0	0	1	0
.........................................................................................................................TTGAGCAGGGCTTTCGC.............	17	2	10	0.10	1	1	0	0	0	0
...........................................................................TTGTATTTGGTAACATAG..........................................................	18	2	10	0.10	1	0	0	0	0	1
............................................................................................GGAAAGGTCTGGAGAAG..........................................	17	2	20	0.05	1	0	0	0	1	0

Generated: 04/24/2015 at 02:58 AM