ID:

dsi_19201

 Coordinate:

x:19097965-19098114 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.1 -22.1 -22.0

Flybase annnotation

five_prime_UTR [x_19097442_19097964_-]; exon [x_19097130_19097964_-]; intron [x_19097965_19113903_-]

No Repeatable elements found

mature
  1. dsi_328  2r:14187890-14187908 -
  2. dsi_19201  x:19098061-19098079 -
  3. x:20174503-20174521 +
  4. node_67150:804-822 -
  5. node_26201:227-245 -
star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGTGATTAAAGATCGTGGATAGTCATGATGCATTTAAAACATATTTTTAATTCTTTTTACTAAAGCTTTTGGTCTGTCTTTGTTGATCCGGCTCGAAGGACCAATGTCTGTGAACTTCCTTGTTTAGTAATTACATATGTTTTTTCGAAAGAATTACGAAGTAAACAACTAACTATCCCTTATTTCTTTGCTTTTGCAGATGATTTCCGTTCACCCATCGATGGATCAGCAAGAGCAGTTTGTAGCAGT
**************************************************(((((((.......((((...((((..........)))).))))(((((((.((((((...(((((......)))))......)))).)).))))))))))))))...(((((((...............))))))).((((....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR1275483
Male prepupae		 O002
Head
 O001
Testis
 SRR1275485
Male prepupae		 SRR1275487
Male larvae
...............................................................................CTGGTTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 25 3 1 1179.00 1179 330 234 214 187 66 90 40 12 2 4 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 24 2 1 1001.00 1001 309 193 178 233 17 16 41 7 5 0 1 1 0 0 0 0
..................................................................................GTTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 22 1 7 68.00 476 185 122 36 63 22 6 6 2 1 3 0 23 0 0 6 1
.................................................................................GGTTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 23 2 12 38.17 458 110 56 79 143 24 9 30 2 2 3 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGGACC................................................................................................................................................... 23 2 1 33.00 33 4 2 27 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GATCCGGCTCGAAGGACCA.................................................................................................................................................. 19 0 5 31.00 155 3 1 1 0 80 14 41 7 0 4 0 0 0 4 0 0
................................................................................TGGTTCATCCGGCTCGAAGGA..................................................................................................................................................... 21 2 2 21.00 42 22 15 0 1 0 0 0 0 1 0 3 0 0 0 0 0
...................................................................................TTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 21 1 12 15.92 191 52 23 21 52 15 15 6 0 1 3 1 2 0 0 0 0
...............................................................................CTGGTTCATCCGGCTCGAAGGACC................................................................................................................................................... 24 3 1 15.00 15 6 6 0 0 0 2 1 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGGACA................................................................................................................................................... 23 3 1 12.00 12 1 3 8 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GATCCGGCTCGAAGGACC................................................................................................................................................... 18 0 5 9.80 49 0 0 0 0 23 14 0 3 0 0 1 0 8 0 0 0
....................................................................................AGATCCGGCTCGAAGGACCA.................................................................................................................................................. 20 1 20 9.10 182 6 0 0 0 59 0 109 6 0 2 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGGACAA.................................................................................................................................................. 24 3 1 8.00 8 1 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTGGTTCATCCGGCTCGAAGGA..................................................................................................................................................... 22 3 3 7.33 22 13 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTGGTTCATCCGGCTCGAAGGAC.................................................................................................................................................... 23 3 1 6.00 6 2 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTCATCCGGCTCGAAGGACCAA................................................................................................................................................. 22 1 1 5.00 5 1 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGG...................................................................................................................................................... 20 2 2 4.50 9 2 3 0 0 0 0 1 0 1 0 1 0 0 0 0 1
................................................................................TTGTTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 24 1 1 4.00 4 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGGAC.................................................................................................................................................... 22 2 1 4.00 4 0 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................ATCCGGCTCGAAGGACCG.................................................................................................................................................. 18 1 20 3.90 78 0 0 0 0 54 0 0 24 0 0 0 0 0 0 0 0
...............................................................................CTTGTTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 25 2 1 3.00 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATCCGGCTCGAAGGACC................................................................................................................................................... 21 1 7 2.14 15 9 4 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCGCTGTTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 27 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGGACCC.................................................................................................................................................. 24 3 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGTCTCGAAGGACCA.................................................................................................................................................. 24 3 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTGGTTCATCCGGCTCGAAGGACCAA................................................................................................................................................. 26 3 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GATCCGGCTCGAAGGA..................................................................................................................................................... 16 0 6 1.83 11 0 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0
...................................................................................TTCATCCGGCTCGAAGGACC................................................................................................................................................... 20 1 12 1.75 21 4 1 2 1 5 2 4 1 0 0 1 0 0 0 0 0
.....................................................................................GATCCGGCTCGAAGG...................................................................................................................................................... 15 0 6 1.67 10 1 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0
.......................................................................................TCCGGCTCGAAGGACCAAT................................................................................................................................................ 19 0 6 1.67 10 0 1 0 0 1 0 0 3 0 0 0 0 0 5 0 0
................................................................................TGGTTCATCTGGCTCGAAGGACCA.................................................................................................................................................. 24 3 2 1.50 3 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATCCGGCTCGAA........................................................................................................................................................ 16 1 8 1.50 12 5 2 0 1 0 0 3 0 0 0 0 0 0 0 0 1
....................................................................................AGATCCGGCTCGAAGGACC................................................................................................................................................... 19 1 20 1.10 22 0 0 0 0 15 0 4 3 0 0 0 0 0 0 0 0
.................................................................................GGTTCATCCGGCTCGAAGGA..................................................................................................................................................... 20 2 13 1.08 14 11 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0
.......................................................................................TCCGGCTCGAAGGACC................................................................................................................................................... 16 0 20 1.05 21 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGGACAAA................................................................................................................................................. 25 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCAACCGGCTCGAAGGACCA.................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATGCGGCTCGAAGGACCA.................................................................................................................................................. 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGCCTCGAAGGACCA.................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCTAAGGACCA.................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTACATCCGGCTCGAAGGACCA.................................................................................................................................................. 24 3 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGGACCG.................................................................................................................................................. 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCAGGCTCGAAGGACCA.................................................................................................................................................. 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTGGTTAATCCGGCTCGAAGGACCA.................................................................................................................................................. 25 3 2 1.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CACCCATCGATGGATCAGCAAGAGCA............ 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................GTGGTTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 25 3 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGGGCCA.................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAAGACCA.................................................................................................................................................. 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGGACCAA................................................................................................................................................. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGGACTA.................................................................................................................................................. 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CTGTTCATCCGGCTCGAAGGAC.................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................TTCATCCGGCTCGAAGGACAAA................................................................................................................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TGATCCGGCTCGAAGGACCAA................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................TGGTTCATCCGGTTCGAAGGACCA.................................................................................................................................................. 24 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGGATCAGCAAGAGCAGTTAGTAGCAG. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CCGGCTCGAAGGACCAGCGTCGGT.......................................................................................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATTCGGCTCGAAGGACCA.................................................................................................................................................. 22 2 7 1.00 7 0 0 3 4 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGGACCT.................................................................................................................................................. 24 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGACTCGAAGGACCA.................................................................................................................................................. 24 3 2 1.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GGTTCATCCGGCTCGAAG....................................................................................................................................................... 18 2 14 0.93 13 1 1 0 0 1 1 0 0 0 9 0 0 0 0 0 0
......................................................................................ATCCGGCTCGAAGGACCAAT................................................................................................................................................ 20 0 6 0.83 5 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0
...................................................................................TTCATCCGGCTCGAAGGAC.................................................................................................................................................... 19 1 12 0.83 10 0 0 0 0 4 5 0 0 1 0 0 0 0 0 0 0
...................................................................................TTCATTCGGCTCGAAGGACCA.................................................................................................................................................. 21 2 13 0.77 10 0 1 2 7 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AGATCCGGCTCGAAGGAC.................................................................................................................................................... 18 1 20 0.70 14 0 0 0 0 7 6 0 1 0 0 0 0 0 0 0 0
.......................................................................................TCCGGCTCGAAGGAC.................................................................................................................................................... 15 0 20 0.65 13 0 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0
...................................................................................TTCATCCGGCTCGAAGG...................................................................................................................................................... 17 1 14 0.64 9 1 6 0 0 0 0 1 0 0 0 1 0 0 0 0 0
.....................................................................................GATCCGGCTCGAAGGACCG.................................................................................................................................................. 19 1 5 0.60 3 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
...................................................................................TTCATCCGGCTCGAAGGACA................................................................................................................................................... 20 2 12 0.58 7 0 0 6 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................CTGGTAGATCCGGCTCGAAGGACCA.................................................................................................................................................. 25 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGTCTCGAAGGA..................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TGATCCGGCTCGAAGGAC.................................................................................................................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................TGGTTCACCCGGCTCGAAGGACCA.................................................................................................................................................. 24 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGGAGGACCA.................................................................................................................................................. 24 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATCCGGCTCGAAGG...................................................................................................................................................... 18 1 8 0.50 4 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0
......................................................................................ATCCGGCTCGAAGGAC.................................................................................................................................................... 16 0 20 0.50 10 0 2 0 0 0 0 0 0 2 0 6 0 0 0 0 0
....................................................................................CGATCCGGCTCGAAGGACCA.................................................................................................................................................. 20 1 9 0.44 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TCCGGCTCGAAGGACCAA................................................................................................................................................. 18 0 20 0.40 8 0 0 0 0 0 0 0 5 3 0 0 0 0 0 0 0
.....................................................................................GATCCGTCTCGAAGGACC................................................................................................................................................... 18 1 9 0.33 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAG....................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGAAGGT..................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GATCCGGCTCGAAGTACCA.................................................................................................................................................. 19 1 6 0.33 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATCAGGCTCGAAGGACA................................................................................................................................................... 21 3 7 0.29 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCACCCGGCTCGAAGGACCA.................................................................................................................................................. 22 2 7 0.29 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATCCGGCTCGAAGGAC.................................................................................................................................................... 20 1 7 0.29 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATCCGGTTCGAAGGACCA.................................................................................................................................................. 22 2 7 0.29 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................TTCGAAGGACCAATGTTTGCGA........................................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................TTTTTACTAAGGCTTTCG.................................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................GTTCATCCGGCTCGAAG....................................................................................................................................................... 17 1 8 0.25 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GGTTCATCCGGCTCGAAGGAC.................................................................................................................................................... 21 2 12 0.25 3 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................GGTTCATCCGGCTCGAAGGACC................................................................................................................................................... 22 2 12 0.25 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TCTGTCATTTTTGGTCCGGCT............................................................................................................................................................ 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATCTGGCTCGAAGGACCA.................................................................................................................................................. 22 2 8 0.25 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................TTCACCCGGCTCGAAGGACCA.................................................................................................................................................. 21 2 12 0.25 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CCGGCTCGAAGGACCG.................................................................................................................................................. 16 1 20 0.25 5 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0
.......................................................................................CCCGGCTCGAAGGACCA.................................................................................................................................................. 17 1 20 0.25 5 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 0
...............................................................................CTGGTTTATCCGGCTCGAAGGACCA.................................................................................................................................................. 25 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TGGTCCGGCTCGAAGG...................................................................................................................................................... 16 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................GATCCGGCTCGAAGGGCC................................................................................................................................................... 18 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TGGTTCGGCTCGAAGGACCA.................................................................................................................................................. 20 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GAGCCGGCTCGAAGGACCA.................................................................................................................................................. 19 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................TGGATCATCCGGCTCGAAGGACCA.................................................................................................................................................. 24 3 12 0.17 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GATCCGGCTCGAAGGAC.................................................................................................................................................... 17 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................CTTTTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 24 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TTCGATCCGGCTCGAAGGACC................................................................................................................................................... 21 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTTTGTTGAGCCGGC............................................................................................................................................................. 15 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GATCCGGCTCGAAAGACCA.................................................................................................................................................. 19 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GTGAGCTGGCTCGAAGGACCA.................................................................................................................................................. 21 3 13 0.15 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
...................................................................................TTCATCCGGCTCGAAGGACCC.................................................................................................................................................. 21 2 13 0.15 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTCATCCGGCTCGAA........................................................................................................................................................ 15 1 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0
......................................................................................AACCGGCTCGAAGGACCA.................................................................................................................................................. 18 1 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0
.................................................................................GGTTCATCCGGCTCGAA........................................................................................................................................................ 17 2 20 0.15 3 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................GATCCGGCCCGAAGGACC................................................................................................................................................... 18 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATCCGGCTCGAAGGACCAC................................................................................................................................................. 23 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATCCGGCTCGAAGGACCG.................................................................................................................................................. 22 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................TTCATCCGGCTCGAAGGA..................................................................................................................................................... 18 1 14 0.14 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0
.....................................................................................GATCCGGCCCGAAGGACCA.................................................................................................................................................. 19 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GATCTGGCTCGAAGGACCA.................................................................................................................................................. 19 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCGTCCGGCTCGAAGGACCA.................................................................................................................................................. 22 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTAGTTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 25 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATCCGGCTTGAAGGACCA.................................................................................................................................................. 22 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................ACTAAAGCTTTTGGGCTC............................................................................................................................................................................. 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................GTTCATCCGGCTCGAAGGACAA.................................................................................................................................................. 22 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GATCCGGCTCGAAGGACCC.................................................................................................................................................. 19 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................GGTTCATCCGGTTCGAAGGACCA.................................................................................................................................................. 23 3 15 0.13 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
..................................................................................GTGCATCCGGCTCGAAGGACCA.................................................................................................................................................. 22 2 15 0.13 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATTTGGCTCGAAGGACCA.................................................................................................................................................. 22 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTGGTTCATCCGGCTCGAA........................................................................................................................................................ 19 3 16 0.13 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................GATCCAGCTCGAAGGACCA.................................................................................................................................................. 19 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATCCTGCTCGAAGGACCA.................................................................................................................................................. 22 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCAATCGGCTCGAAGGACCA.................................................................................................................................................. 22 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTGGTTCATCCGGCTCGAAG....................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................CGATCCGGCTCGAAGGACC................................................................................................................................................... 19 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TCCGGCTCGAAGGACCACT................................................................................................................................................ 19 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GATCCGGCTCGAAGGAA.................................................................................................................................................... 17 1 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATCCGGCTCGAAGGATTA.................................................................................................................................................. 22 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGGCTCGAAGTACCA.................................................................................................................................................. 15 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
.....................................................................................GATTCGGCTCGAAGGACCA.................................................................................................................................................. 19 1 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTACATCCGGCTCGAAGGACCA.................................................................................................................................................. 22 2 20 0.10 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0
................................................................................TGGTTCATCCGGCTCGA......................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................TTCATCCGGCTCGAAGGGCCA.................................................................................................................................................. 21 2 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GGTTCATCCGGCTCGAAAGACCA.................................................................................................................................................. 23 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTCATCCGGCTCGA......................................................................................................................................................... 15 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GGTTCATCCGGCTAGAAGGACCA.................................................................................................................................................. 23 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ATGGTTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 25 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GATCCGGTTCGAAGGACCA.................................................................................................................................................. 19 1 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................GGTTCATCCGGCTCGAAGGATCA.................................................................................................................................................. 23 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTCATCCGGCACGAAGGACCA.................................................................................................................................................. 21 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GGTTCATCCGGCTCGAAGG...................................................................................................................................................... 19 2 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGATGATTTCCGT....................................... 15 1 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................GGTTCATCCGGCTCGAAGGACCC.................................................................................................................................................. 23 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TCCGGCTCGAAGGACCTTTCT.............................................................................................................................................. 21 3 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................TGGGTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 24 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTCTTCCGGCTCGAAGGACC................................................................................................................................................... 20 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTCATCCGGTTCGAAGGACCA.................................................................................................................................................. 21 2 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CGGATGGATCAGTAAGAGC............. 19 3 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................TTCATCCGGCTCGAAG....................................................................................................................................................... 16 1 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................GTTCGTCCGGCTCGAAGG...................................................................................................................................................... 18 2 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............TCGGGGATAGTAATAATGC.......................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................TTCATCCGGCTCGAAGAA..................................................................................................................................................... 18 2 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................CGGTTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 24 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTTCTCCCATCGATGAA........................ 17 2 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TCCGGCTCGAAGGTCCA.................................................................................................................................................. 17 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................TTTCATCCGGCTCGAAGGACCA.................................................................................................................................................. 22 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGGCTCGAAGGACTA.................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................TTCCGGCTCGAAGGACCA.................................................................................................................................................. 18 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ATCCGGCTCGAAGGACGA.................................................................................................................................................. 18 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................ATCCGGCTCGAAGGACCAA................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................CCGGCTCGAAGGACTA.................................................................................................................................................. 16 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ATCCGTCTCGAAGGACCA.................................................................................................................................................. 18 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................ATCCGGCTCGAAGGAGCA.................................................................................................................................................. 18 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTCATCCGGCTCGAAGGT..................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTTTTTCGAAGGAATT.............................................................................................. 16 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

AACACTAATTTCTAGCACCTATCAGTACTACGTAAATTTTGTATAAAAATTAAGAAAAATGATTTCGAAAACCAGACAGAAACAACTAGGCCGAGCTTCCTGGTTACAGACACTTGAAGGAACAAATCATTAATGTATACAAAAAAGCTTTCTTAATGCTTCATTTGTTGATTGATAGGGAATAAAGAAACGAAAACGTCTACTAAAGGCAAGTGGGTAGCTACCTAGTCGTTCTCGTCAAACATCGTCA
**************************************************(((((((.......((((...((((..........)))).))))(((((((.((((((...(((((......)))))......)))).)).))))))))))))))...(((((((...............))))))).((((....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
.................................................................................ACAAGTAGGCCGAGCTTCCTG.................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................ATCTTTCTTAAACCTTCATTTG................................................................................... 22 3 4 0.25 1 0 1 0 0 0 0
..................................................................................CAAGTAGGCCGAGCTTCCTGGT.................................................................................................................................................. 22 1 7 0.14 1 0 0 0 1 0 0
...................................................................................................................................................................................................................................GTCCTTCTCGTCAAATAT..... 18 2 7 0.14 1 0 0 1 0 0 0
.......................................................................................AGGCCGAGCTTCCTGGTT................................................................................................................................................. 18 0 20 0.10 2 1 0 1 0 0 0
..................................................................................CAAGTAGGGCGAGCTTCCGG.................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 1 0
.................................................................................................................................................................................................AAACGTCTACTAAAACCATG..................................... 20 3 18 0.06 1 0 0 1 0 0 0
.....TAACTTCTAGCACCT...................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:19097915-19098164 - dsi_19201 TTGTG-------------------------------------------------------------------------------------------------------ATTAAAGATCGTGGATAGTCAT------GATGCATTTAAAACATATTTTTAAT----T-----------------CTTTTTACTAAAGCTTTTGGTCTGTCTTTGTTGATCCGGCTCGAAGGACCAATGTCTGT----------------------------------------GAACTTCCTTGTTTAGTAA-TTACATATGTT-----------TTTTCGAAAGA-A-TT--ACGAAGTA---AA--------CAACT----AACTATCC-CTT-AT---TT--CTTTGCTTTTG--CAGATGATTTCCGTTCACCCATCGATG------------GATCAGCAAGAGCAGT---------------T---TGTAG---CAGT
droSec2 scaffold_8:2556179-2556224 - AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTTACCCATCGATG------------GATCAGCAAGAGCAGT---------------T---TGTAG---CAGT
dm3 chrX:20362372-20362642 - TTGTG-------------------------------------------------------------------------------------------------------ATTAAGGATCGTGGATAGTCAT------GATGCATTTAAAACATATTTTTAAT----TATAT----TGAGCAATACTTTTTACTAAAGCCGTTGATCTGCCTTTGTTGATCCGGCTCGAAGCACCAATGTCTGT---------------------------------------CGAACTTCCTTGATTAGTAC-TTACATATGTTTGGTTAAACCTTTTTCGAAAAA-A------------A---CCGTATTCCTTATTT--------CAATTATT-TTTTTTT--TT---TTTTTG--CAGATGATTTACGTTAACCCATCGATG------------GATCAGCAAGAGCAGT---------------T---AGTAG---CAGT
droEre2 scaffold_4690:16966886-16966978 - TCAC-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTA---AA--------TAACCAACTAACT-----ATT-AT---TT--CT---TTTTTC--CAGATGATTTCCGTTAACCCGTCGATG------------GATCAGCAAGAGGAGT---------------T---AGTAG---CACT
droYak3 X:19587910-19588167 - TTGTG-------------------------------------------------------------------------------------------------------ATTATAGATAGTGTATGGTCATACTAATAATACATTTTAATCTT---------TTTATATATCTAATGAATCTAACGTTTTGATAATGC--------------TGTCGATTCGGCTCGAAGGACCAATGTCTGT---------------------------------------CGAATTTCCTTGTTGCGCAAATT-----AGT--TGCCAAACCTTTTTCAAAAAAGATTT-----CACTA---AG--------TACTCAACTAACT-----CTT-AT---TTCTGT---TTTTTG--CAGATGATTTTCGTTAACCCATCGATG------------GATCAGCAAGAGGAGT---------------T---AGTAG---CAGT
droEug1 scf7180000409509:571760-571850 + ACCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAATG---AA-------------AACTAACT-----TTT-CC---TTAATT---TCCTTA--CAGATGATTTCCGTTTACCAACCGATC------------GATCAGCAAGAACAAT---------------C---CTTAG---CAGT
droBia1 scf7180000302187:1096712-1096962 + CGAT-CTAACATTGTATTA-CTGGGCTCTCCAATGGGGTTTATAGGTAGGAAGGTTTTGCATACGTAGAGATCAAACAAATACAAAGGAAAATTCTATATATATGCAAATTAAAAATTCTATA-AATAAG------GATCTTCCT------------AAAC----TGCA---------------------------------------------------------------------------------------------------------------------------------------------------TTAAACAATTTAA----------------AGAAATAAAA--------TAACC--------AGAACGCC-TTCTCTT--CC---TTCCTG--CAGATGGTTTCCGTTTTCGCAGCGATC------------GACCGGCAAGGAGGTT---------------C---AGTATCGTCAGT
droTak1 scf7180000415872:981083-981303 - GTAATTTAATACAATTTTTTCTAGTC-------------------------TAGATTTGTATCCCT-------------------------TTTTTAACTGTTTTCAAATTAAAAATTCTGAATAGTAAC------AATTTTTTT------------T-------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTTTGTAT-TTTTAAATATT-----------TATTCAAATAA-A-TCT-----AATA---AA--------A----AATTAATT-----CTC-TTTTTAT--CT---TATTTA--CAGATGACCTCCGTTTACCCTTCGATC------------GATCGGCAAGGAGATT---------------C---CGTAGCATCGGT
droEle1 scf7180000490214:1558740-1558872 + TAATG---------------------------------------------------------------------------------------------------GGAAATTAATAATTGTGTGTCGTC-T------GA--TATTAAA---------TTAATTCCTTATATTCAATAAATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-----GTT-TT---TC--TT---CTTTTT--CAGATGATATACCTTTAAGTATCAATT------------AATCC---AGAAAAAG---------------C---AGTAG---CAGT
droRho1 scf7180000779985:424780-424857 - CTTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------AC--TT---CTTTTG--CAGATGATTTCCATTTATTCATCGAACGAT-----GTGTGATCAGCCAAAAGAAG---------------T---AGTAG---TAGT
droFic1 scf7180000453982:52296-52376 - ACAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----AACCAACATTTT-TCTCCTC--TT---CGTTTT--CAGATATT--------ATCTATCGATT---------TGTGATCAGCAAGAACGAG---------------C---AGGAG---CAGT
droKik1 scf7180000302592:1007604-1007757 - CTTAG-------------------------------------------------------------------------------------------------------GTTATA------------TCAT------CCTATATTTAAAA--TGTTATAAAC----TATAC-AAATTAATTTA---------------------------------------------------------------------A-----------------------------ATATTTTCCCTGTTTCTTATTTT-----AGA--TGC------------------------------------------------------------------TTAC--CCC--TC---CGTTACCACAATTG----------ATCGATCGCTTGAT-----CATTGATCACACAGAATAAA---------------C---AGTATTCTCAGT
droAna3 scaffold_13117:5185820-5185880 + ACAT-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCGAAAAA-A-AGAGACAAAAAA---AA--------GAATCACTTAAGC-----CTT-AT---TT--CTTTCCTTTT-----------------------------------------------------------------------------------------
droBip1 scf7180000394336:12395-12398 - CAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1e:8976777-8976944 - AGAC-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATCTATCAATATCTATCCGCT--------CCAATATCTAAAAGTATTTTAGTATTTTGTTCCATCTTTTTTTTAACCACGAAAT-----------------------------------------------------------------------------------------------TTC-CTTATTT--CC---CAATTT--CAGATCGTACT----ACTCCATTGG-GGATCCATGG---GAT----------AAGCAGTGCAAAAACATATTCTAGGGA---AAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTGTG-------------------------------------------------------------------------------------------------------ATTAAAGATCGTGGATAGTCAT------GATGCATTTAAAACATATTTTTAAT----T-----------------CTTTTTACTAAAGCTTTTGGTCTGTCTTTGTTGATCCGGCTCGAAGGACCAATGTCTGT----------------------------------------GAACTTCCTTGTTTAGTAA-TTACATATGTT-----------TTTTCGAAAGA-A-TT--ACGAAGTA---AA--------CAACT----AACTATCC-CTT-AT---TT--CTTTGCTTTTG--CAGATGATTTCCGTTCACCCATCGATG------------GATCAGCAAGAGCAGT---------------T---TGTAG---CAGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................GATCCGGCTCGAAGGACCA...................................................................................................................................................................................................................................................................19531.0015580714440310041010000
.......................................................................................................................................................................................................................GATCCGGCTCGAAGGACC....................................................................................................................................................................................................................................................................1859.80492331400800100000000
........................................................................................................................................................................................................................ATCCGGCTCGAAGGACCG...................................................................................................................................................................................................................................................................18203.90785424000000000000000
.......................................................................................................................................................................................................................GATCCGGCTCGAAGGA......................................................................................................................................................................................................................................................................1661.8311000000000011000000
.......................................................................................................................................................................................................................GATCCGGCTCGAAGG.......................................................................................................................................................................................................................................................................1561.671000000010009000000
.........................................................................................................................................................................................................................TCCGGCTCGAAGGACCAAT.................................................................................................................................................................................................................................................................1961.671013005001000000000
.........................................................................................................................................................................................................................TCCGGCTCGAAGGACC....................................................................................................................................................................................................................................................................16201.0521000000210000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCATCGATG------------GATCAGCAAGAGCA.................................2611.00101000000000000000
......................................................................................................................................................................................................................TGATCCGGCTCGAAGGACCAA..................................................................................................................................................................................................................................................................2111.00100000100000000000
........................................................................................................................................................................................................................ATCCGGCTCGAAGGACCAAT.................................................................................................................................................................................................................................................................2060.83500005000000000000
.........................................................................................................................................................................................................................TCCGGCTCGAAGGAC.....................................................................................................................................................................................................................................................................15200.6513000000000130000000
.......................................................................................................................................................................................................................GATCCGGCTCGAAGGACCG...................................................................................................................................................................................................................................................................1950.60311000000001000000
......................................................................................................................................................................................................................TGATCCGGCTCGAAGGAC.....................................................................................................................................................................................................................................................................1820.50100000100000000000
........................................................................................................................................................................................................................ATCCGGCTCGAAGGAC.....................................................................................................................................................................................................................................................................16200.501000000002620000000
.........................................................................................................................................................................................................................TCCGGCTCGAAGGACCAA..................................................................................................................................................................................................................................................................18200.40805000000030000000
..........................................................................................................................................................................................................................CCGGCTCGAAGGACCG...................................................................................................................................................................................................................................................................16200.25500000000005000000
.......................................................................................................................................................................................................................GATCCGGCTCGAAGGAC.....................................................................................................................................................................................................................................................................1760.17100000000100000000
.......................................................................................................................................................................................................................GATCCGGCTCGAAGGACCC...................................................................................................................................................................................................................................................................1970.14100100000000000000
.......................................................................................................................................................................................................................GATCCGGCTCGAAGGAA.....................................................................................................................................................................................................................................................................1790.11100000000001000000
........................................................................................................................................................................................................................ATCCGGCTCGAAGGACCAA..................................................................................................................................................................................................................................................................19200.05101000000000000000
droSec2
AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTTACCCATCGATG------------GATCAGCAAGAGCAGT---------------T---TGTAG---CAGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TTGTG-------------------------------------------------------------------------------------------------------ATTAAGGATCGTGGATAGTCAT------GATGCATTTAAAACATATTTTTAAT----TATAT----TGAGCAATACTTTTTACTAAAGCCGTTGATCTGCCTTTGTTGATCCGGCTCGAAGCACCAATGTCTGT---------------------------------------CGAACTTCCTTGATTAGTAC-TTACATATGTTTGGTTAAACCTTTTTCGAAAAA-A------------A---CCGTATTCCTTATTT--------CAATTATT-TTTTTTT--TT---TTTTTG--CAGATGATTTACGTTAACCCATCGATG------------GATCAGCAAGAGCAGT---------------T---AGTAG---CAGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................ATCCGGCTCGAAGCACCA...................................................................................................................................................................................................................................................................18286.5017300000000000000000000000000000000000000000000000000000000021000000000000000000000010100051010010000001001202212000001000000000000110000000000000000000000000000001701000002000000010000890000000000000000000000000005100100000000001001000000000000000000002101001120001220110000000000316202035103141910000010000000000110000100000000200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACCCATCGATG------------GATCAGCAAGAG...................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................ATCCGGCTCGAAGCACCC...................................................................................................................................................................................................................................................................1834.67140000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100600000010000000000000000000000000011200000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGATG------------GATCAGCAAGAGCAGT---------------T---............2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCATCGATG------------GATCAGCAAGAGC..................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATG------------GATCAGCAAGAGC..................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TCCGGCTCGAAGCACCA...................................................................................................................................................................................................................................................................1723.5070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000300200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCATCGATG------------GATCAGCAAGAGCAGT---------------................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATG------------GATCAGCAAGAGCAGT---------------T---AG..........2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCCATCGATG------------GATCAGCAAGAGC..................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCCATCGATG------------GATCAGCAAGAGCAG................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GATG------------GATCAGCAAGAGCAGT---------------T---AG..........2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATG------------GATCAGCAAGAGCAGT---------------T---AGT.........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTAACCCATCGATG------------GATC...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCCATCGATG------------GATCAGCAAGAGCAGT---------------................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTTAACCCATCGATG------------GATCAGCA.......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGATG------------GATCAGCAAGAGCAGT---------------C---............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGCAGT---------------T---AGTAG---CAGT2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATG------------GATCAGCAAGAGCAGT---------------T---AGT.........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TAAT----TATAT----TGAGCAATG......................................................................................................................................................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTACGTTAACCCAT................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TAAACCTTTTTCGAAAAA-A------------A---GT..........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
............................................................................................................ATTAAGGATCGTGGATAGTC.............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATG------------GATCAGCAAGAGCAGT---------------T---AG..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATG------------GATCAGCAAGAGCAGT---------------T---AGTA........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GATG------------GATCAGCAAGAGCAGT---------------T---............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATG------------GATCAGCAAGAGCAGT---------------T---AGT.........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGATG------------GATCAGCAAG.....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATCGATG------------GATCAGCAAGAGCA.................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GATG------------GATCAGCAAGAGCAGT---------------T---AGT.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCAGT---------------T---AGTAG---CAGT1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTTAACCCATCGATG------------GATCAGCA.......................................2711.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGATG------------GATCAGCAAGAGCAG................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTAACCCATCGATG------------GATCAGCAAG.....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................ATCCGGCTCGAAGCACCG...................................................................................................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGATG------------GATCAGCAAGAGC..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATG------------GATCAGCAAGA....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCATCGATG------------GATCAGCAAGAGCAG................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................................................................................................................................................................................................TCCGGCTCGAAGCACCAATC................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACGTTAACCCATCGATG------------GAT............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................ATCCGGCTCGAAGCACCAAC.................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AATTATT-TTTTTTT--TT---TTTTT.........................................................................................2170.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCAC-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTA---AA--------TAACCAACTAACT-----ATT-AT---TT--CT---TTTTTC--CAGATGATTTCCGTTAACCCGTCGATG------------GATCAGCAAGAGGAGT---------------T---AGTAG---CACTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCCGTTAACCCGTCGATG------------...............................................2212.0020100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTAACCCGTCGATG------------G..............................................1811.0010000010
droYak3
TTGTG-------------------------------------------------------------------------------------------------------ATTATAGATAGTGTATGGTCATACTAATAATACATTTTAATCTT---------TTTATATATCTAATGAATCTAACGTTTTGATAATGC--------------TGTCGATTCGGCTCGAAGGACCAATGTCTGT---------------------------------------CGAATTTCCTTGTTGCGCAAATT-----AGT--TGCCAAACCTTTTTCAAAAAAGATTT-----CACTA---AG--------TACTCAACTAACT-----CTT-AT---TTCTGT---TTTTTG--CAGATGATTTTCGTTAACCCATCGATG------------GATCAGCAAGAGGAGT---------------T---AGTAG---CAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GATG------------GATCAGCAAGAGGAGT---------------T---AGTA........2511.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAGAGGAGT---------------T---AGTAG---CA..2111.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAGAGGAGT---------------T---AGTAG---C...2011.00100000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCATCGATG------------GATCAGCAAGAG...................................2411.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACCCATCGATG------------GATCAGCA.......................................2211.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCATCGATG------------GATCAGCAAGAGGA.................................2611.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGATG------------GATCAGCAAGAGGA.................................1911.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATG------------GATCAGCAAGAGGAGT---------------T---AGT.........2711.00100000010000
........................................................................................................................................................................................................................ATTCGGCTCGAAGGACCA...................................................................................................................................................................................................................................................................1850.20100100000000
.........................................................................................................................................................................................................................TTCGGCTCGAAGGACCA...................................................................................................................................................................................................................................................................1760.17100000100000
droEug1
ACCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAATG---AA-------------AACTAACT-----TTT-CC---TTAATT---TCCTTA--CAGATGATTTCCGTTTACCAACCGATC------------GATCAGCAAGAACAAT---------------C---CTTAG---CAGTSizeHit CountTotal NormTotal
No Reads
droBia1
CGAT-CTAACATTGTATTA-CTGGGCTCTCCAATGGGGTTTATAGGTAGGAAGGTTTTGCATACGTAGAGATCAAACAAATACAAAGGAAAATTCTATATATATGCAAATTAAAAATTCTATA-AATAAG------GATCTTCCT------------AAAC----TGCA---------------------------------------------------------------------------------------------------------------------------------------------------TTAAACAATTTAA----------------AGAAATAAAA--------TAACC--------AGAACGCC-TTCTCTT--CC---TTCCTG--CAGATGGTTTCCGTTTTCGCAGCGATC------------GACCGGCAAGGAGGTT---------------C---AGTATCGTCAGTSizeHit CountTotal NormTotal
No Reads
droTak1
GTAATTTAATACAATTTTTTCTAGTC-------------------------TAGATTTGTATCCCT-------------------------TTTTTAACTGTTTTCAAATTAAAAATTCTGAATAGTAAC------AATTTTTTT------------T-------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTTTGTAT-TTTTAAATATT-----------TATTCAAATAA-A-TCT-----AATA---AA--------A----AATTAATT-----CTC-TTTTTAT--CT---TATTTA--CAGATGACCTCCGTTTACCCTTCGATC------------GATCGGCAAGGAGATT---------------C---CGTAGCATCGGTSizeHit CountTotal NormTotal
No Reads
droEle1
TAATG---------------------------------------------------------------------------------------------------GGAAATTAATAATTGTGTGTCGTC-T------GA--TATTAAA---------TTAATTCCTTATATTCAATAAATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-----GTT-TT---TC--TT---CTTTTT--CAGATGATATACCTTTAAGTATCAATT------------AATCC---AGAAAAAG---------------C---AGTAG---CAGTSizeHit CountTotal NormTotal
No Reads
droRho1
CTTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------AC--TT---CTTTTG--CAGATGATTTCCATTTATTCATCGAACGAT-----GTGTGATCAGCCAAAAGAAG---------------T---AGTAG---TAGTSizeHit CountTotal NormTotal
No Reads
droFic1
ACAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----AACCAACATTTT-TCTCCTC--TT---CGTTTT--CAGATATT--------ATCTATCGATT---------TGTGATCAGCAAGAACGAG---------------C---AGGAG---CAGTSizeHit CountTotal NormTotal
No Reads
droKik1
CTTAG-------------------------------------------------------------------------------------------------------GTTATA------------TCAT------CCTATATTTAAAA--TGTTATAAAC----TATAC-AAATTAATTTA---------------------------------------------------------------------A-----------------------------ATATTTTCCCTGTTTCTTATTTT-----AGA--TGC------------------------------------------------------------------TTAC--CCC--TC---CGTTACCACAATTG----------ATCGATCGCTTGAT-----CATTGATCACACAGAATAAA---------------C---AGTATTCTCAGTSizeHit CountTotal NormTotal
No Reads
droAna3
ACAT-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCGAAAAA-A-AGAGACAAAAAA---AA--------GAATCACTTAAGC-----CTT-AT---TT--CTTTCCTTTT-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................AAAAA-A-AGAGACAAAAAA---A...........................................................................................................................................1920.501010000
..........................................................................................................................................................................................................................................................................................................................................AAAAA-A-AGAGACAAAAAA---AA--------C.................................................................................................................................21130.081010000
droBip1
CAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AGAC-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATCTATCAATATCTATCCGCT--------CCAATATCTAAAAGTATTTTAGTATTTTGTTCCATCTTTTTTTTAACCACGAAAT-----------------------------------------------------------------------------------------------TTC-CTTATTT--CC---CAATTT--CAGATCGTACT----ACTCCATTGG-GGATCCATGG---GAT----------AAGCAGTGCAAAAACATATTCTAGGGA---AAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGG-GGATCCATGG---GAT----------AAGC..............................2111.0010000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATGG---GAT----------AAGCAGTGC.........................2011.0010100000000

Generated: 05/19/2015 at 05:24 PM