ID:

dsi_1916

 Coordinate:

2l:2874863-2875122 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.6 -35.6 -35.6

Flybase annnotation

intron [2l_2874395_2874823_+]; CDS [2l_2874824_2874862_+]; exon [2l_2874824_2874862_+]; CDS [2l_2875123_2875580_+]; exon [2l_2875123_2875945_+]; intron [2l_2874863_2875122_+]

No Repeatable elements found

mature
  1. dsi_1916  2l:2875052-2875066 +
  2. 2l:13464616-13464630 +
  3. 3l:16781390-16781404 -
  4. x:9529773-9529787 -
  5. node_18496:384-398 +
star

Sense Strand Reads

-----------#######################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAAATCTTAGCTTCATCTGGCTTATCACAAATTTACGCATTCTTCACCGGTAAATATTTCACGCTTGATAAAATATTTAAAGTTTTAATCAAACCTAACCCAATATGGCATAGTCTTGTTAATATTTGTGCGTAGTATCTTTACTTTCGTAGAGCTTTGTAAATTATGCTTTCCACTAAAAAAATAGTTATTAGTAGAATATGAAAAACATTTGTGGAATCCCATATATACATGTGGTTATTGTTGTTTTTTAATTAACCCAAAAGATCAATTTCGTGCGCTGTTGCTAATCCCTACTTACGTTTTTAGGAGCTGCCTCGAATCTGGTGGGGAATAATGCCAGCAACGATGGAAGAGGC
**************************************************.(((((((((((....)))...))))))))((((.((((.(((..(((..(((...)))..)))..))))))).)))).((((.((((....))))..))))((((............))))....(((((((..(((..((((((((..(((((((......(((((....)))))......((.(((((..((((.....))))))))))).........))))))).....))))))))..)))......)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body
................................................................................................................................................................................................................................................................................................................................................AATGCCAGCAACGATGGAA..... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................TGGGGAGTAATGCCAGCAACGATGGA...... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TATTAGTAGAATTTGAAA......................................................................................................................................................... 18 1 2 1.00 2 0 0 0 1 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................................CCGGAGCTGCCTTGAATCTGGTGG............................. 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................ATCTGGTGGGGAATAATGC................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................CAGCAACGATGGAAGAGGC 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TGCCTCGAATCTGGTGGGGAATAATGC................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................CCTCGAATCAGGTAGGGA.......................... 18 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................TTTCGTTGAGCTTTGTAAACT.................................................................................................................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TCTTGTTAATATTTGGGC.................................................................................................................................................................................................................................... 18 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................AATAATGCCAGCAGGGATGGAG..... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................CAAAAGATCAATTGCG................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................TAAAAAAATAGTTTTTAGGAGAATA.............................................................................................................................................................. 25 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................TATTGTTGTTTTTTA.......................................................................................................... 15 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................................................................................................CAACGATGGAAGAGG. 15 0 6 0.17 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................TAAAAAATAGTTCTTAGGAGAATA.............................................................................................................................................................. 24 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................TACATATGGTTAGGGTTGTT............................................................................................................... 20 3 12 0.17 2 0 0 0 0 0 0 1 0 0 1
................................................................................................................................................................................................................................................................................................................TTTTAGGAACAGCCTCGGA..................................... 19 3 13 0.15 2 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................TATTGTTGGTTTTTAATT....................................................................................................... 18 1 13 0.08 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................TGAGTGGAATATGAAAAA....................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.........................................................................AAATTTAAAGTTTTAAT.............................................................................................................................................................................................................................................................................. 17 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTTTAGAATCGAAGTAGACCGAATAGTGTTTAAATGCGTAAGAAGTGGCCATTTATAAAGTGCGAACTATTTTATAAATTTCAAAATTAGTTTGGATTGGGTTATACCGTATCAGAACAATTATAAACACGCATCATAGAAATGAAAGCATCTCGAAACATTTAATACGAAAGGTGATTTTTTTATCAATAATCATCTTATACTTTTTGTAAACACCTTAGGGTATATATGTACACCAATAACAACAAAAAATTAATTGGGTTTTCTAGTTAAAGCACGCGACAACGATTAGGGATGAATGCAAAAATCCTCGACGGAGCTTAGACCACCCCTTATTACGGTCGTTGCTACCTTCTCCG
**************************************************.(((((((((((....)))...))))))))((((.((((.(((..(((..(((...)))..)))..))))))).)))).((((.((((....))))..))))((((............))))....(((((((..(((..((((((((..(((((((......(((((....)))))......((.(((((..((((.....))))))))))).........))))))).....))))))))..)))......)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
....................................................................................................................................................................................................................................................................................AACGCGACAACGATTAGGGA................................................................ 20 1 1 1.00 1 1 0 0 0 0
...............................................................CAAACGATCTTATAAATTTCAAA.................................................................................................................................................................................................................................................................................. 23 3 2 0.50 1 0 0 1 0 0
.............AGTAGGCCGAATAGTG........................................................................................................................................................................................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 1 0
..........................................GAAGTCGTCATTTATGAAG........................................................................................................................................................................................................................................................................................................... 19 3 20 0.20 4 0 4 0 0 0
........................................AAGAAGTCGTCATTTATGAAG........................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0
.........................................AGAAGTCGTCATTTATGAAG........................................................................................................................................................................................................................................................................................................... 20 3 14 0.14 2 0 2 0 0 0
..................................................................................................................GGAACAATAATAAACATGCAT................................................................................................................................................................................................................................. 21 3 8 0.13 1 0 0 0 0 1
.............AGTAGGCCGAATAGT............................................................................................................................................................................................................................................................................................................................................ 15 1 10 0.10 1 0 0 0 1 0
.................................................................................................................................................................................................................................................................................................................................................GGCGGTCGTTGCTTCCTTCT... 20 3 11 0.09 1 1 0 0 0 0
................................................GCCAGATATAAAGTGC........................................................................................................................................................................................................................................................................................................ 16 2 16 0.06 1 0 1 0 0 0
........................................................................................................................................................................................................................................................AAAAATTAAGTGGGCTTT.............................................................................................. 18 2 20 0.05 1 0 0 0 0 1
..........................................................................................................................................................................................................................................................AAATTTCTTGGGTTTTCT............................................................................................ 18 2 20 0.05 1 0 0 0 1 0
................................................................................................................................................................................................................................................................................................................AAAATCCTCGACTGACC....................................... 17 2 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:2874813-2875172 + dsi_1916 AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-A-TATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTA---------ATC-------------------------AAACCTAACCC-A-AT-------------------------ATGG--CATAGTCTT-GTTA-AT-ATTT---------GTGCGTAGTATCTTTA----CTTTCGTAGAGCTT-TGTAAATT--ATGCTTT----------------CCACTAAA-----------------AAAATAGTTATTAGTAGAATAT---GAAAAACATTTGTGGAATCC-----CATATATACATG---T-G---G------TTATTGTTG---TTTTT-TA-A-TTAACCCA--AAA-GA--------TCAATTT----CGTGCGCTGT------TGCTAATCCCTAC-TTACG-TTTTTAGGAGCTGCCTCGAATCTGGTGGGGAATAATGCCAGCAACGATGGAA---------G----AGGC
droSec2 scaffold_5:1153223-1153582 + AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-A-TATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTA---------ATC-------------------------AAACCTAACCC-A-AT-------------------------ATGG--CATAGTCTT-GTTA-AT-ATTT---------GTGCGTAGTATCTTTA----CTTTCGTAGAGCTT-TGTAAATT--ATGCTTT----------------CCACTAAA-----------------AAAATAGTTATTAGTAGAATAT---GAAAAACATTTGTGGAATTC-----CATATATACATG---T-G---G------TTATTGTTG---TTTTT-TA-A-TTAACCCA--AAA-GA--------TCAATTT----CATGTGCTGT------TGCTAATCCCTAT-TTACG-TTTTTAGGAGCTGCCTCGAATCTGGTGGGAAATAATGCCAGCAACGATGGAA---------G----AGGC
dm3 chr2L:2997481-2997840 + AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-A-TATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTA---------ATC-------------------------AAACCTAACCC-A-AT-------------------------ATGG--CATAGTCTT-GTTA-AT-ATTT---------GTGCGTAGTATCTTTA----TTTTCGTAGAGCTT-TGTACATT--ATGCTTT----------------CCACTAAA-----------------AAAATAGTTAATAGTAGAATAT---AGAAAACATTTGTGGAATCC-----CATATATACATG---T-G---G------TTATTGTTG---TTTTT-TA-A-TTAACCCA--AAA-TG--------TCAATAT----CATGTGCTGT------TGCTAATCCTCGC-ATACG-TTTTTAGGAGCTGCCTCGAATCTGGTGGGGAATAATGCCAGCAACGATGGAA---------G----AGGC
droEre2 scaffold_4929:3043032-3043395 + AA--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-A-TATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTA---------ATC-------------------------AAACCTAACCC-A-AT-------------------------ATGG--CATAGTCTT-GTTA-AT-ATTT---------GTGCGTAGTATCTTTA----TTTTCGTAGAGCTT-TGTACATA--ATGCTTT----------------CCACTAAA------------------AACTAGTTCGAAGTAGAGTAT----AAAAACATTTGTGGAATCC-----CATATATACATG---T-G---A------TTATTGTTGTTCCTCTTTC--A-TTAACCCA--AAA-GG--------TCAGTAAA-GCCATGAACGGT------TGCTAATCCCCAC-TTCAA-TTTTTAGGAGCTGCCTCGAATCTGGTGGGGAATAATGCCAGCAACGATGGAA---------G----AGGC
droYak3 2L:2990886-2991250 + AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-A-TATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTA---------ATC-------------------------AAACCTAACCC-A-AT-------------------------ATGG--CATAGTCTT-GTTA-GT-ATTT---------AGGCGTAGTAACTTTA----TTTTTGTAGCGCTT-TGTACATT--ATGCTTT----------------CCACTAAA------------------AAATAGTTAAAAGTAGAGTAT---GAAAAACATTTGTGGAATCC-----CATATATACATG---T-G---G------TTATTGTTGTG-TTATTTCT-A-TTAACCCA--AAA-GG--------TCATTAAA-GCCATGAGCTGT------TGCTAATCCCCAC-TTCAA-TTTTTAGGCGCCGCCTCGAATCTGGTGGGGACTAATGCCAGCACCGATGGAA---------G----AGGC
droEug1 scf7180000409554:3107668-3108029 - AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCCTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTATTT-AA-----------------------------------A----------------------------------------------------------------GT-ATTT---------ATT-------------------------TATCTTAACCC-A-A--------------------------CTGG--CATAGTCTT-GTTA-AA-ATTA---------GTGAGTAGTCCCG-----------CATAGAGCTT-TGTAAATT--ATGCTTT---------------TCCACTAAACCA--------------AAAGTAGTTTAAAGTAGAATAA---GATAAGCATTTGTGGAATCC-----CATTTATA--TG---T-TATAG------TTA-CGTTG---TTCTTGAA-A-TTAACCTA--AAACGG--------TCAATAAC-TCCATGATATTG------TACTAATCACGAT-TGAAT-TTTTTAGGAGCTGCTTCGAATATTGTGGGAAATAATGCAAGTGTCGAGGGAC---------G----AGGC
droBia1 scf7180000302188:2031488-2031850 + AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTATAT-AA-----------------------------------A----------------------------------------------------------------GA-TTTA-A-------ATT-------------------------AAAACTAACCC-A------------------------------GG--CATAGT-TT-GTTA-AA-ATTA---------GTACGTAGTCTCGTTG----TCTCTGTAGAGCTT-TGTACATT--GTGCTTT---------------CCCACTAAACCAAA------------AATGTAGTTTAAAGTAGAGTAT---ATTGAACATTTGTGGAATTC-----CATTTATG--AG----------------TTATTGTTG---CTGTTACA-A-TTAACCCA--AAAACA--------TGAGTAAC-ACCATGAGCTTG------AACTAACACCGCT-TGAAA-ATTTTAGGAGCTGCGTCGAATCTTGTGGGCAGCAATGCCAGTGCCGAGGGAA---------G----AGGC
droTak1 scf7180000415438:858192-858560 - AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTT-A-------ATCA------------------------AAACCTAACCC--------------------------------TG--CATTGTCTT-GTTA-AA-CTTA---------GTGCGTAGTCTCGTTA----TTTCTGTAGAGCTT-TGTACCTT--CTGCTTT---------------CCCACTAAACCTTAGA----------AAATTAGTTTAAAGTAGAGTAT---GTTGAACATTTGTAGAAATC-----ATTGTATT--TG---T-T---A------TTATTTTTG---CTGTTACA-A-TTAACCCA--TAAACC--------TCAATATA-ATTATGATCTTG------AACTAATAGCGCT-TGAAA-TTTTTAGGAGCTGCTTCGAACCTGGTGGGGAATATTGCCAGTGCGGAGGGAA---------G----AGGC
droEle1 scf7180000491046:1682379-1682752 + AC--AA----------------------AACGTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTATTT-AA-----------------------------------A----------------------------------------------------------------TT-TGTA---------ATC-------------------------AAAACTAACCC-TAAA-------------------------ATGG--CATAGTCTT-GTTA-AA-ACTA---------GTTCGTAGTCTCGTTT----TCCCCGTAGAGCTT-TGTACATT--ATGCTTT---------------CCCACTAAACCAAAAAAAAATAA---AAAATAGTTGCTTGTAGAAAAC---GATGAACATTTGTGGAATCC-----CATTTCTT--TG---T-T---A------TTATTGTTG---CTGTTACA-A-TTAACCCA--TAGAGG--------TCAATGGC-ACCGTGAACCTT------TACTAAACCCGCT-TGAAT-TTTGTAGGAGCTGCTTCGAATCTGGTGGGAAGTGGTG------CCGAGGGAA---------G----AGGA
droRho1 scf7180000780028:83850-84212 + AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTTATT-AA-----------------------------------A----------------------------------------------------------------GT-TTTA---------ATC-------------------------AAACCTAACCA-A-AA-------------------------CTGG--CATAGTCTT-GTTA-AT-ATTA---------GTTCGTAGTTTCGTTA----TTCCCGTAGAGCTT-TGTACATT--TTACTTT---------------TCCACTAAACCAAA------------AAAATAGTTGCAAGTAGAATGT---GATGAACATCTGTGAAATCC-----CATTTATA--TG---T-A---G------TTACTGTTG---CTGTTACA-A-TTAACCCA--AAA-GG--------TCAATAGC-ACGATAAGACTT------TACTAAACCCGCT-TGAAA-TTTGTAGGAGCTGCTTCGAATCTGGTGGGAAATAGTG------CCGAGGGAA---------G----AGGA
droFic1 scf7180000453924:978380-978746 + AC--AA----------------------AACTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTATTT-AA-----------------------------------A----------------------------------------------------------------GT-T-TA---------ATC-------------------------AAACCTAATCC-A-AA-------------------------CTGG--CATAGTCTT-GTTA-CA-CTTA---------GTACGTAGTCTCGCTG----TTCCCGTAGAGCTT-TGTAAATT--ATGCGCT---------------CCCACTAAACCCAAAT-----------------AAAATAATGGAACTTGTTGATGTACATTTGTAGAATCC-----CATTTATG--TG---T-T---T------GTATTGTTG---CTGTTACA-A-TTAACCCA--AAATGG--------TCAATATC-GCCAAGAGTATC------TAGTAAACCCGCT-TGAAT-TTTTTAGGAGCTGCTTCGAATCTGGTGGGGAACAGTACAAGTGTCGAGGGAA---------G----AGGA
droKik1 scf7180000302679:689772-690154 + ATACAA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTATTT-AT------AG---------------------------A----------------------------------------------------------------GT-ATTA---------AGCA----------------------ATAAATCTAACCA-AAAA-------------------------CTGT--CATAGTCTTTGCTA-AAAAAAA---------GAACGTAGTCTCCTTG----ATCCCGTAGAGCTT-TGTACATT--ATGC-------------------CCACTAAACTTAAAAC-----AAA-AAATTAGCTAAAAATAGT---T---GTTAAACATTTGTGTTATCC-----CATTTATA--TG---T-TACTG-----TTTATTGTTG---ATGTTACT-A-TTAACCCC-GAAA-GG-------ATCAATAAATGGCAAAAATAAG------TGCTAATCCCGCT-TGACA-TTTCTAGGAGCTGCATCGAACCTGGTTGGCAATAGCTCTAGTCCAGACGGAA---------G------GG
droAna3 scaffold_12916:9477324-9477685 + dan_628 AA--AAAAAACA------------AAAATTCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATGTCACGCTT-GA-TAAA--GTATTT-AA----------------------------------------------------------------------------------------------------GTAAT-TAAATATGTAATTAAAAT----------------AAGTAATCCTAACCC--------------------------------GA--CATAGTTCT-CCTA-AA-A---------------------------------TCCCTTAGAGCTT-TGTAAATT--ATGCTTT----------------CCACTAATCCCCC----------------------AAAATGGAA------GACAATCATTTGTGTTATCT-----CATT-ATT--TGTTGT-A---T---TTCTTGTCGTTG---CTGTTGAA-A-TTAACAAA--AAAAAA--------AAAACTTA-AATTAAACTATT------TGCTAACAAAGAT-TGTGA-TTTTTAGGAGCTGCCTCGACGCTGGTGGGAAGCAATTCGAGCTCAGAGAGCC---------G----GGGA
droBip1 scf7180000396580:1562286-1562639 - AC--AAAAAACC--------------AATTCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATGTCACGCTT-GA-TAAA-AGTATTT-AA-----------------------------------A----------------------------------------------------------------TA-TTTA---------AGT--------------------------AACCTAACCC--------------------------------GA--CATAGTTCT-TCTA-AA-ATT------------TCGTAGT-----TA----ATCCTTAAGAGCTT-TGTATATT--ATGCTTT----------------CTACTAATCCCTA------------------------AATGGAACCC----AATCTCATTTGTGTTATCT-----CATTTATT--TGACGT-A---T---TTGTTGTTGTTG---CTGTTAAATA-TTAACTAA--AAA-AA--------CCTATT---ATTAAAAGTATG------TGCTAATATGGGT-TGTAA-TTTTTAGGAGCTGCCTCCTCGCTGGTGGGAAACAATTCAAGCTCAGAGAGCC---------G----GGGA
dp5 4_group3:2890108-2890533 + AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAAAAGTATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTTTA-------ACTA------------------------AAACGTAACCC-A-AACTAAAAAAAAAAACAATAACAAATCCTAT--CATAGTCTT-GTTGAAAATGTA---------TTCCGTAGATTTTCTCCTGTAGCCTGTAGAGCTT-TGTACATAAAATGCTAT----CCCCCCTCCAACCCACTAAAATG----------AACA-----AATT----TTAGAAAAA---TAGAAACATTTGTGTAATTC-----CATTTAGC--TG---TTG---GTTGCCGTTGTATTTG---TTGTTGAA-A-TTAACCTACCAAA-GGT------CTCAGCATC-GCCATGAACTCT------TGCTAATCCTGATGCTGTT-CTTTTAGGAGCTGCCTCAACGCTGGTGGGGAACAACAACAACAACTCTGGCT---------CTGGTGGGC
droPer2 scaffold_1:4374597-4375013 + AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAAGATTTACGCATTCTTCACCGGTAAATATTTCACGCTTTGA-TAAAAAGTATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTTAA-------ACTA------------------------AAGCGTAACCC-A-GACTAAAAC-AAAAACAATAACAAATCCTAT--CATAGTCTT-GTTCAAAATGTA---------TTCCGTAGATTTTCTCCTGTAGCCGGTAGAGCTT-TGTACATAAAATGCTAT----ACCCCCTCCAACCCACTAAAATG----------AACA-----AATT----TTAGAAAAA---TAGAAACATTTGTGTAAACC-----CATTTAGC--CG---TTG---GTTGCCGTTGTATTTG---TTGTTGAA-A-TTAACCTACCAAA-GGT------CTCAGCATC-GCCATGAACTCT------TCCTAATCCTGATACTGTT-CTTTTAGGAGCTGCCTCAACGTTGGTGGGGAACAAC------AACTCTGGCT---------C----TGGT
droWil2 scf2_1100000004516:2772589-2772976 - AC--AATCA-------------------ATATTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATGTCACGCTT-AAATTAA-AATCGTT-A---------------------------------------------------------------------------------------------------------------------ATTAAAAAAAAAAAAAGCATTTTAAAGTAAA-----CCCCA-GAA------------------AAAATTTTGGAAAATGGTCTG-GCTA-AA-TCTA---------ATTTGTAGTTTTCCTATTC-TTCCTGTAGAGCTTTTGTATATAAGTTGCTTTTGTTTTGCTTTTCTACCCACTAATCCATA------------------------------------------------------------------ATGT--CG---TTG-TTGTTAACAATGTTATTG---TTGTTGTT-T-TTAACCAAT-TTGCAATCAATATTTTTA-------TATAAACATTAACTTAATACAATTTGCATATCAAC-TTTTTAGGGGCTGCCTCTACAATAATGGGCAATAACA--ATCAACAATCGAG---------C----AATC
droVir3 scaffold_12963:13875939-13876332 + dvi_11669 GA--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-ACGTAAA-AGTTCTATAAATATATAT---------------------ATATAATGATAT-----TACCCGTAATACAACCCAACTAAAAACCAA--AAAATAAAT------------------------------------------------------------------AC-A-TT-------------------------ATTG----TAAGCTA-TTTA-AG--CTGTCTA-----GTATGTTGTCG----A----CTCCTGT--AGCTT-TGTACATATATTGCTCT----AAC-GTT----CCCACTTATTTA-----------ACA--------------------------------ATTTT-----TACCATTTC---TCTT--TGTTGT-T---G---TTGTTGTTGTTG---TTGTTGCA-GTTTAACCCA--TATAAT--------GACTATTT-CATTCGAGATAA------AATTAACCAAAGA-TAAAT-TTTGCAGGCGCAGCATCCACGCTGGTGGGTGGCAATAACGGAGAGGTGAG------TGCACG----CGGC
droMoj3 scaffold_6500:5774304-5774706 - AC--AAAAATTATTCTACTACGAAATACTACTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-AAGTAAA-AGTTCTATAAATATATATTATAAAAAATATATTAATATGATATACTGATATATAACAACCCGTAATACAACCCGACTAAAAAACT------------------------------------------------------------------------------TC-A-TT-------------------------ATTG--CATTG----------AA-GCTGTTGAGTGTATTTA---GACG----C----CTCCTGT--AGCTT-TGTATATATATTGCTCT----AACTGTA----ACCACTTAAATA-----------------------------------------------------------------------ACCTA---C-G---T------TTACCGTTT---C-----TC-G-TTAACCCA--TCGACT--------GCAGCTGA-CATGAGCGAAGT------ATCTAATCCAATT-TGGTA-ATTACAGGCGCAGCATCCACGCTGGTGGGTGGCAGTGGTGGT---GAGGGAAGTGGTGCACG----AGGT
droGri2 scaffold_15126:6015952-6016347 - GA--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-AAGTAAA-AGTTCCTTAAATATATAG---------------------------A-ATAT-----ACCAAATAATACAACTCAACTAAATATCTATATAAATACATATATAGTTGTTTGCTAAT-TA-ATCTG-------------------------------------------------------------------------------T------------AA-TCTG---------TTGAGTAGATTGCCGC----CTCCTGT--AGCTT-TGTACATATATTGCTCTT---AACTGTG----TCTACGTACCTA----------------------------------------ATAACTATTTGC---TTAC-----CAATTTTA--CG---T-T---A------TTGTTGTAG---TTGTTTCC-GTTTAACCCA--GAAAAT--------TCATTTTT-CATATGAGGCAC------AACTAATATATTT-TGGAATTTTACAGGTGCCGCTTCCACGCTGGTGGGTGGCATCAACGGGGAGGTGAA------TTCACG----TGGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-A-TATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTA---------ATC-------------------------AAACCTAACCC-A-AT-------------------------ATGG--CATAGTCTT-GTTA-AT-ATTT---------GTGCGTAGTATCTTTA----CTTTCGTAGAGCTT-TGTAAATT--ATGCTTT----------------CCACTAAA-----------------AAAATAGTTATTAGTAGAATAT---GAAAAACATTTGTGGAATCC-----CATATATACATG---T-G---G------TTATTGTTG---TTTTT-TA-A-TTAACCCA--AAA-GA--------TCAATTT----CGTGCGCTGT------TGCTAATCCCTAC-TTACG-TTTTTAGGAGCTGCCTCGAATCTGGTGGGGAATAATGCCAGCAACGATGGAA---------G----AGGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAGCAACGATGGAA---------.........1911.00100000100000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGTGGGGAATAATGC................................1911.00100000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACGATGGAA---------G----AGGC1911.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCGAATCTGGTGGGGAATAATGC................................2711.00100000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTTG---TTTTT-TA-...............................................................................................................................................1550.20100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGATGGAA---------G----AGG.1560.17100000000001000000
droSec2
AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-A-TATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTA---------ATC-------------------------AAACCTAACCC-A-AT-------------------------ATGG--CATAGTCTT-GTTA-AT-ATTT---------GTGCGTAGTATCTTTA----CTTTCGTAGAGCTT-TGTAAATT--ATGCTTT----------------CCACTAAA-----------------AAAATAGTTATTAGTAGAATAT---GAAAAACATTTGTGGAATTC-----CATATATACATG---T-G---G------TTATTGTTG---TTTTT-TA-A-TTAACCCA--AAA-GA--------TCAATTT----CATGTGCTGT------TGCTAATCCCTAT-TTACG-TTTTTAGGAGCTGCCTCGAATCTGGTGGGAAATAATGCCAGCAACGATGGAA---------G----AGGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAGCAACGATGGAA---------G----AGGC2311.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAGCAACGATGGAA---------G----AGGC2411.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATGCCAGCAACGATGGAA---------G----AG..2511.0010010
................................................................ATTCTTCACCGGTAAGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510010
dm3
AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-A-TATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTA---------ATC-------------------------AAACCTAACCC-A-AT-------------------------ATGG--CATAGTCTT-GTTA-AT-ATTT---------GTGCGTAGTATCTTTA----TTTTCGTAGAGCTT-TGTACATT--ATGCTTT----------------CCACTAAA-----------------AAAATAGTTAATAGTAGAATAT---AGAAAACATTTGTGGAATCC-----CATATATACATG---T-G---G------TTATTGTTG---TTTTT-TA-A-TTAACCCA--AAA-TG--------TCAATAT----CATGTGCTGT------TGCTAATCCTCGC-ATACG-TTTTTAGGAGCTGCCTCGAATCTGGTGGGGAATAATGCCAGCAACGATGGAA---------G----AGGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTGCCTCGAATCTGGTGGG.........................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAGCAACGATGGAA---------G----AGG.2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTGCCTCGAATCTGGTGGGG........................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGGTGGGGAATAATGCC...............................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACGATGGAA---------G----AGGC1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGGGAATAATGCCAGCAACGATG.....................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGGGAATAATGCCAGC............................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAATCTGGTGGGGAATAATGC................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGTGGGGAATAATGC................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCAACGATGGAA---------G----AGG.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGTGGGGAATAATGCC...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCTCGAATCTGGTGGGGAATA....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGCCAGCAACGATGGAA---------G----AGGC2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCCAGCAACGATGGAA---------G----AGG.2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAGCAACGATGGAA---------G----AGGC2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTCGAATCTGGTGGGGAATAA...................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TTACGCATTCTTCACCGGTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGGGGAATAATGCCAGCA...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCGAATCTGGTGGGGAATAATG.................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-TG--------TCAATAT----CATGTGCTGT------TGCT......................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TTATCACAA-ATTTACGCATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACGATGGAA---------G----AGG.1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGCCTCGAATCTGGTGGGGA.......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----CATGTGCTGT------TGCTAAT...................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TTTCGTAGAGCTT-TGTACATT--A.................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCCAGCAACGATGGAA---------G----AGGC2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TTT---------GTGCGTAGTATCTTTA----TT.........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGCAACGATGGAA---------G----AGGC2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATCTGGTGGGGAATAATGC................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAGCAACGATGGAA---------G----AGGC2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACGATGGAA---------G----AGGC2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--AAA-TG--------TCAATAT----CATGTGCTGT------..........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAATCTGGTGGGGAATAATGCC...............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TC-------------------------AAACCTAACCC-A-AT-------------------------ATG.................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................ACGCATTCTTCACCGGTAAATATTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACGATGGAA---------G----AG..1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCAACGATGGAA---------G----AG..1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TTA---------ATC-------------------------AAACCTAACCC-C-...............................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AA--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-A-TATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTA---------ATC-------------------------AAACCTAACCC-A-AT-------------------------ATGG--CATAGTCTT-GTTA-AT-ATTT---------GTGCGTAGTATCTTTA----TTTTCGTAGAGCTT-TGTACATA--ATGCTTT----------------CCACTAAA------------------AACTAGTTCGAAGTAGAGTAT----AAAAACATTTGTGGAATCC-----CATATATACATG---T-G---A------TTATTGTTGTTCCTCTTTC--A-TTAACCCA--AAA-GG--------TCAGTAAA-GCCATGAACGGT------TGCTAATCCCCAC-TTCAA-TTTTTAGGAGCTGCCTCGAATCTGGTGGGGAATAATGCCAGCAACGATGGAA---------G----AGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACGATGGAA---------G----AGGC2011.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCCAGCAACGATGGAA---------G----AGGC2611.0010001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGTGGGGAATAATGCC...............................2011.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACGATGGAA---------G----AGGC1911.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACGATGGAA---------G----AGGC1811.0011000000
droYak3
AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-A-TATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTA---------ATC-------------------------AAACCTAACCC-A-AT-------------------------ATGG--CATAGTCTT-GTTA-GT-ATTT---------AGGCGTAGTAACTTTA----TTTTTGTAGCGCTT-TGTACATT--ATGCTTT----------------CCACTAAA------------------AAATAGTTAAAAGTAGAGTAT---GAAAAACATTTGTGGAATCC-----CATATATACATG---T-G---G------TTATTGTTGTG-TTATTTCT-A-TTAACCCA--AAA-GG--------TCATTAAA-GCCATGAGCTGT------TGCTAATCCCCAC-TTCAA-TTTTTAGGCGCCGCCTCGAATCTGGTGGGGACTAATGCCAGCACCGATGGAA---------G----AGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACCGATGGAA---------G----AGGC1811.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTAATGCCAGCACCGATGGAA---------G----AGGC2911.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGACTAATGCCAGCACCGA.......................2111.00101000000000
........................................................................................................................................................................................................................................................................................................................GTTA-GT-ATTT---------AGGCGTAGT......................................................................................................................................................................................................................................................................................................................................1911.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAATGCCAGCACCGATGGAA---------G----A...2511.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTCGAATCTGGTGGGGACTAATGC................................2711.00101000000000
.......................................................................................................TATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTA---------ATC-------------------------AAACCTAACCC-A-...............................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAATGCCAGCACCGATGGAA---------G----AGG.2711.00100000010000
droEug1
AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCCTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTATTT-AA-----------------------------------A----------------------------------------------------------------GT-ATTT---------ATT-------------------------TATCTTAACCC-A-A--------------------------CTGG--CATAGTCTT-GTTA-AA-ATTA---------GTGAGTAGTCCCG-----------CATAGAGCTT-TGTAAATT--ATGCTTT---------------TCCACTAAACCA--------------AAAGTAGTTTAAAGTAGAATAA---GATAAGCATTTGTGGAATCC-----CATTTATA--TG---T-TATAG------TTA-CGTTG---TTCTTGAA-A-TTAACCTA--AAACGG--------TCAATAAC-TCCATGATATTG------TACTAATCACGAT-TGAAT-TTTTTAGGAGCTGCTTCGAATATTGTGGGAAATAATGCAAGTGTCGAGGGAC---------G----AGGCSizeHit CountTotal NormTotal
No Reads
droBia1
AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTATAT-AA-----------------------------------A----------------------------------------------------------------GA-TTTA-A-------ATT-------------------------AAAACTAACCC-A------------------------------GG--CATAGT-TT-GTTA-AA-ATTA---------GTACGTAGTCTCGTTG----TCTCTGTAGAGCTT-TGTACATT--GTGCTTT---------------CCCACTAAACCAAA------------AATGTAGTTTAAAGTAGAGTAT---ATTGAACATTTGTGGAATTC-----CATTTATG--AG----------------TTATTGTTG---CTGTTACA-A-TTAACCCA--AAAACA--------TGAGTAAC-ACCATGAGCTTG------AACTAACACCGCT-TGAAA-ATTTTAGGAGCTGCGTCGAATCTTGTGGGCAGCAATGCCAGTGCCGAGGGAA---------G----AGGCSizeHit CountTotal NormTotal
No Reads
droTak1
AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTT-A-------ATCA------------------------AAACCTAACCC--------------------------------TG--CATTGTCTT-GTTA-AA-CTTA---------GTGCGTAGTCTCGTTA----TTTCTGTAGAGCTT-TGTACCTT--CTGCTTT---------------CCCACTAAACCTTAGA----------AAATTAGTTTAAAGTAGAGTAT---GTTGAACATTTGTAGAAATC-----ATTGTATT--TG---T-T---A------TTATTTTTG---CTGTTACA-A-TTAACCCA--TAAACC--------TCAATATA-ATTATGATCTTG------AACTAATAGCGCT-TGAAA-TTTTTAGGAGCTGCTTCGAACCTGGTGGGGAATATTGCCAGTGCGGAGGGAA---------G----AGGCSizeHit CountTotal NormTotal
No Reads
droEle1
AC--AA----------------------AACGTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTATTT-AA-----------------------------------A----------------------------------------------------------------TT-TGTA---------ATC-------------------------AAAACTAACCC-TAAA-------------------------ATGG--CATAGTCTT-GTTA-AA-ACTA---------GTTCGTAGTCTCGTTT----TCCCCGTAGAGCTT-TGTACATT--ATGCTTT---------------CCCACTAAACCAAAAAAAAATAA---AAAATAGTTGCTTGTAGAAAAC---GATGAACATTTGTGGAATCC-----CATTTCTT--TG---T-T---A------TTATTGTTG---CTGTTACA-A-TTAACCCA--TAGAGG--------TCAATGGC-ACCGTGAACCTT------TACTAAACCCGCT-TGAAT-TTTGTAGGAGCTGCTTCGAATCTGGTGGGAAGTGGTG------CCGAGGGAA---------G----AGGASizeHit CountTotal NormTotal
No Reads
droRho1
AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTTATT-AA-----------------------------------A----------------------------------------------------------------GT-TTTA---------ATC-------------------------AAACCTAACCA-A-AA-------------------------CTGG--CATAGTCTT-GTTA-AT-ATTA---------GTTCGTAGTTTCGTTA----TTCCCGTAGAGCTT-TGTACATT--TTACTTT---------------TCCACTAAACCAAA------------AAAATAGTTGCAAGTAGAATGT---GATGAACATCTGTGAAATCC-----CATTTATA--TG---T-A---G------TTACTGTTG---CTGTTACA-A-TTAACCCA--AAA-GG--------TCAATAGC-ACGATAAGACTT------TACTAAACCCGCT-TGAAA-TTTGTAGGAGCTGCTTCGAATCTGGTGGGAAATAGTG------CCGAGGGAA---------G----AGGASizeHit CountTotal NormTotal
No Reads
droFic1
AC--AA----------------------AACTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTATTT-AA-----------------------------------A----------------------------------------------------------------GT-T-TA---------ATC-------------------------AAACCTAATCC-A-AA-------------------------CTGG--CATAGTCTT-GTTA-CA-CTTA---------GTACGTAGTCTCGCTG----TTCCCGTAGAGCTT-TGTAAATT--ATGCGCT---------------CCCACTAAACCCAAAT-----------------AAAATAATGGAACTTGTTGATGTACATTTGTAGAATCC-----CATTTATG--TG---T-T---T------GTATTGTTG---CTGTTACA-A-TTAACCCA--AAATGG--------TCAATATC-GCCAAGAGTATC------TAGTAAACCCGCT-TGAAT-TTTTTAGGAGCTGCTTCGAATCTGGTGGGGAACAGTACAAGTGTCGAGGGAA---------G----AGGASizeHit CountTotal NormTotal
No Reads
droKik1
ATACAA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAA-AGTATTT-AT------AG---------------------------A----------------------------------------------------------------GT-ATTA---------AGCA----------------------ATAAATCTAACCA-AAAA-------------------------CTGT--CATAGTCTTTGCTA-AAAAAAA---------GAACGTAGTCTCCTTG----ATCCCGTAGAGCTT-TGTACATT--ATGC-------------------CCACTAAACTTAAAAC-----AAA-AAATTAGCTAAAAATAGT---T---GTTAAACATTTGTGTTATCC-----CATTTATA--TG---T-TACTG-----TTTATTGTTG---ATGTTACT-A-TTAACCCC-GAAA-GG-------ATCAATAAATGGCAAAAATAAG------TGCTAATCCCGCT-TGACA-TTTCTAGGAGCTGCATCGAACCTGGTTGGCAATAGCTCTAGTCCAGACGGAA---------G------GGSizeHit CountTotal NormTotal
No Reads
droAna3
AA--AAAAAACA------------AAAATTCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATGTCACGCTT-GA-TAAA--GTATTT-AA----------------------------------------------------------------------------------------------------GTAAT-TAAATATGTAATTAAAAT----------------AAGTAATCCTAACCC--------------------------------GA--CATAGTTCT-CCTA-AA-A---------------------------------TCCCTTAGAGCTT-TGTAAATT--ATGCTTT----------------CCACTAATCCCCC----------------------AAAATGGAA------GACAATCATTTGTGTTATCT-----CATT-ATT--TGTTGT-A---T---TTCTTGTCGTTG---CTGTTGAA-A-TTAACAAA--AAAAAA--------AAAACTTA-AATTAAACTATT------TGCTAACAAAGAT-TGTGA-TTTTTAGGAGCTGCCTCGACGCTGGTGGGAAGCAATTCGAGCTCAGAGAGCC---------G----GGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAA------GACAATCATTTGTGT..........................................................................................................................................................................................................2112.002000020
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAT-TGTGA-TTTTTAGGAG............................................................2011.001000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGTCGTTG---CTGTTGAA-A-T............................................................................................................................................2111.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGAA------GACAATCATTTGT............................................................................................................................................................................................................2111.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCGACGCTGGTGGGAA.......................................1911.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAA------GACAATCATTTG.............................................................................................................................................................................................................2111.001000100
..............................CTTAGCTTCATCTGGCTTATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCTCGACGCTGGTGGG.........................................2111.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCTGCCTCGACGCTGGT............................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCGACGCTGGTGGGAAG......................................2111.001100000
....................................................................................................................................................................................................................................................................................................................TCT-CCTA-AA-A---------------------------------TCCCTTAGAGC...............................................................................................................................................................................................................................................................................................................2111.001000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGGAAGCAATTCGAGCTCAGA.......................2411.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-TGTGA-TTTTTAGGAGCTGC........................................................2111.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCTCAGAGAGCC---------G----GGGA2111.001100000
droBip1
AC--AAAAAACC--------------AATTCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATGTCACGCTT-GA-TAAA-AGTATTT-AA-----------------------------------A----------------------------------------------------------------TA-TTTA---------AGT--------------------------AACCTAACCC--------------------------------GA--CATAGTTCT-TCTA-AA-ATT------------TCGTAGT-----TA----ATCCTTAAGAGCTT-TGTATATT--ATGCTTT----------------CTACTAATCCCTA------------------------AATGGAACCC----AATCTCATTTGTGTTATCT-----CATTTATT--TGACGT-A---T---TTGTTGTTGTTG---CTGTTAAATA-TTAACTAA--AAA-AA--------CCTATT---ATTAAAAGTATG------TGCTAATATGGGT-TGTAA-TTTTTAGGAGCTGCCTCCTCGCTGGTGGGAAACAATTCAAGCTCAGAGAGCC---------G----GGGASizeHit CountTotal NormTotal
No Reads
dp5
AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-GA-TAAAAAGTATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTTTA-------ACTA------------------------AAACGTAACCC-A-AACTAAAAAAAAAAACAATAACAAATCCTAT--CATAGTCTT-GTTGAAAATGTA---------TTCCGTAGATTTTCTCCTGTAGCCTGTAGAGCTT-TGTACATAAAATGCTAT----CCCCCCTCCAACCCACTAAAATG----------AACA-----AATT----TTAGAAAAA---TAGAAACATTTGTGTAATTC-----CATTTAGC--TG---TTG---GTTGCCGTTGTATTTG---TTGTTGAA-A-TTAACCTACCAAA-GGT------CTCAGCATC-GCCATGAACTCT------TGCTAATCCTGATGCTGTT-CTTTTAGGAGCTGCCTCAACGCTGGTGGGGAACAACAACAACAACTCTGGCT---------CTGGTGGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAACAACAACAACTCTGGC...................2211.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT------CTCAGCATC-GCCATGAACTCT------TGC.......................................................................................2711.0010100000000
droPer2
AC--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAAGATTTACGCATTCTTCACCGGTAAATATTTCACGCTTTGA-TAAAAAGTATTT-AA-----------------------------------A----------------------------------------------------------------GT-TTTTAA-------ACTA------------------------AAGCGTAACCC-A-GACTAAAAC-AAAAACAATAACAAATCCTAT--CATAGTCTT-GTTCAAAATGTA---------TTCCGTAGATTTTCTCCTGTAGCCGGTAGAGCTT-TGTACATAAAATGCTAT----ACCCCCTCCAACCCACTAAAATG----------AACA-----AATT----TTAGAAAAA---TAGAAACATTTGTGTAAACC-----CATTTAGC--CG---TTG---GTTGCCGTTGTATTTG---TTGTTGAA-A-TTAACCTACCAAA-GGT------CTCAGCATC-GCCATGAACTCT------TCCTAATCCTGATACTGTT-CTTTTAGGAGCTGCCTCAACGTTGGTGGGGAACAAC------AACTCTGGCT---------C----TGGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGGGGAACAAC------AACTCTGG....................2311.001010000
droWil2
AC--AATCA-------------------ATATTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATGTCACGCTT-AAATTAA-AATCGTT-A---------------------------------------------------------------------------------------------------------------------ATTAAAAAAAAAAAAAGCATTTTAAAGTAAA-----CCCCA-GAA------------------AAAATTTTGGAAAATGGTCTG-GCTA-AA-TCTA---------ATTTGTAGTTTTCCTATTC-TTCCTGTAGAGCTTTTGTATATAAGTTGCTTTTGTTTTGCTTTTCTACCCACTAATCCATA------------------------------------------------------------------ATGT--CG---TTG-TTGTTAACAATGTTATTG---TTGTTGTT-T-TTAACCAAT-TTGCAATCAATATTTTTA-------TATAAACATTAACTTAATACAATTTGCATATCAAC-TTTTTAGGGGCTGCCTCTACAATAATGGGCAATAACA--ATCAACAATCGAG---------C----AATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGGCAATAACA--ATCAACAAT......................2411.00100001
droVir3
GA--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-ACGTAAA-AGTTCTATAAATATATAT---------------------ATATAATGATAT-----TACCCGTAATACAACCCAACTAAAAACCAA--AAAATAAAT------------------------------------------------------------------AC-A-TT-------------------------ATTG----TAAGCTA-TTTA-AG--CTGTCTA-----GTATGTTGTCG----A----CTCCTGT--AGCTT-TGTACATATATTGCTCT----AAC-GTT----CCCACTTATTTA-----------ACA--------------------------------ATTTT-----TACCATTTC---TCTT--TGTTGT-T---G---TTGTTGTTGTTG---TTGTTGCA-GTTTAACCCA--TATAAT--------GACTATTT-CATTCGAGATAA------AATTAACCAAAGA-TAAAT-TTTGCAGGCGCAGCATCCACGCTGGTGGGTGGCAATAACGGAGAGGTGAG------TGCACG----CGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACGGAGAGGTGAG------TGC...........2011.001000000000001000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGAGAGGTGAG------TGCA..........1811.001000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTG---TTGTTGCA-GTTT...........................................................................................................................................1990.111000001000000000000000000000000000000000000000000000000000000000
droMoj3
AC--AAAAATTATTCTACTACGAAATACTACTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-AAGTAAA-AGTTCTATAAATATATATTATAAAAAATATATTAATATGATATACTGATATATAACAACCCGTAATACAACCCGACTAAAAAACT------------------------------------------------------------------------------TC-A-TT-------------------------ATTG--CATTG----------AA-GCTGTTGAGTGTATTTA---GACG----C----CTCCTGT--AGCTT-TGTATATATATTGCTCT----AACTGTA----ACCACTTAAATA-----------------------------------------------------------------------ACCTA---C-G---T------TTACCGTTT---C-----TC-G-TTAACCCA--TCGACT--------GCAGCTGA-CATGAGCGAAGT------ATCTAATCCAATT-TGGTA-ATTACAGGCGCAGCATCCACGCTGGTGGGTGGCAGTGGTGGT---GAGGGAAGTGGTGCACG----AGGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGGTGGGTGGCAGTGGTGGT---.........................2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGTGGTGGT---GAGGGAAGTGGT.............2411.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAGTGGTGGT---GAGGGAAGTGGT.............2611.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGT---GAGGGAAGTGGTGCAC.........2411.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGGTGGT---GAGGGAAGTGGTTT...........2511.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGTGGTGGT---GAGGG....................1811.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGGTGGCAGTGGTGGT---GAGGGA...................2511.001000001
droGri2
GA--AA----------------------ATCTTAGCTTCATCTGGCTTATCACAA-ATTTACGCATTCTTCACCGGTAAATATTTCACGCTT-AAGTAAA-AGTTCCTTAAATATATAG---------------------------A-ATAT-----ACCAAATAATACAACTCAACTAAATATCTATATAAATACATATATAGTTGTTTGCTAAT-TA-ATCTG-------------------------------------------------------------------------------T------------AA-TCTG---------TTGAGTAGATTGCCGC----CTCCTGT--AGCTT-TGTACATATATTGCTCTT---AACTGTG----TCTACGTACCTA----------------------------------------ATAACTATTTGC---TTAC-----CAATTTTA--CG---T-T---A------TTGTTGTAG---TTGTTTCC-GTTTAACCCA--GAAAAT--------TCATTTTT-CATATGAGGCAC------AACTAATATATTT-TGGAATTTTACAGGTGCCGCTTCCACGCTGGTGGGTGGCATCAACGGGGAGGTGAA------TTCACG----TGGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 02:56 AM