ID:

dsi_19146

 Coordinate:

2r:4783319-4783468 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_4783469_4783576_+]; exon [2r_4783469_4783576_+]; intron [2r_4783124_4783468_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGCAAGGGTAGAACCCTAATCGAATCTTTTACTTCAAGATTTAAATATTTGTTTGTATGCAAGTTCTGCTTAACAATTCGCCCCACCCGAAAGAAGGCTAATCTTCATTTTGTTTACTGTTTTTCTTCTCTCCTAACACATTTAATGCTCGCTTATGTCCCAAAAAACCCAAACCGCAATCGCGCTCCGCACCTAACAGCGGCAATGCGAGCTCTGCCTACCTCACATCCGGATATTCAACACCACAAA
**************************************************...((((..(((.....)))...))))...........(((((((((......)))).)))))....(((((................((((.............))))................(((....)))..........)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
....................................................................................................................................................................................................CGAGCGGCAATGCGAGCTC................................... 19 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................................................................................ATGCGAGCTCTGCCTACCT.......................... 19 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TGCCTACCTCACATCCGGATATTCGA......... 26 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................................................................GCGGCAATGCGAGCTCTGCCT.............................. 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................AGCGGCAATGCGAGCTCTGCC............................... 21 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................................GCGAGCTCTGCCTACCTCACATC.................... 23 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................................................................................GCAATGCGAGCTCTGCCT.............................. 18 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................................GCGGCAATGCGAGCTCTG................................. 18 0 1 1.00 1 0 0 0 1 0 0
...............................................................................................................................................................................................................................TCACATCCGGATTTGCAACGCC..... 22 3 3 0.33 1 0 0 0 1 0 0
...................................................................................................................................................................................ATCGGGCTCGGCACCTA...................................................... 17 2 4 0.25 1 0 0 0 0 1 0
.................TAATTGAATCTTTAACTTCGA.................................................................................................................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 1
....................................................................................................................................................................................................ACAGCGGAACTGCGAG...................................... 16 2 20 0.10 2 0 0 0 0 2 0
.................................................................................CCGGACCCGAAAGAAGG........................................................................................................................................................ 17 2 11 0.09 1 0 0 0 1 0 0
...............................................................................GGCCGGACCCGAAAGAAGG........................................................................................................................................................ 19 3 11 0.09 1 0 0 0 1 0 0
.....................................AGATTTGAATATCTGGTTGT................................................................................................................................................................................................. 20 3 19 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GTCGTTCCCATCTTGGGATTAGCTTAGAAAATGAAGTTCTAAATTTATAAACAAACATACGTTCAAGACGAATTGTTAAGCGGGGTGGGCTTTCTTCCGATTAGAAGTAAAACAAATGACAAAAAGAAGAGAGGATTGTGTAAATTACGAGCGAATACAGGGTTTTTTGGGTTTGGCGTTAGCGCGAGGCGTGGATTGTCGCCGTTACGCTCGAGACGGATGGAGTGTAGGCCTATAAGTTGTGGTGTTT
**************************************************...((((..(((.....)))...))))...........(((((((((......)))).)))))....(((((................((((.............))))................(((....)))..........)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
........................................................ATACGGTCAAGACGAATGGTT............................................................................................................................................................................. 21 2 1 4.00 4 2 0 0 1 0 1 0 0
..............................................................TCAAGACGAATTGTT............................................................................................................................................................................. 15 0 1 2.00 2 0 1 0 0 1 0 0 0
..........................................................AAGCTCCAGACGAATTGTTAAG.......................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................TTCAAGACGAATGGTT............................................................................................................................................................................. 16 1 5 0.60 3 0 0 0 0 0 0 3 0
..............................................................TCAAGACGAATTTTTCACCGG....................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0
...........................................................CGTTCAAGACGAATGGTT............................................................................................................................................................................. 18 1 3 0.33 1 0 0 0 1 0 0 0 0
........................................................ATACGGTCAAGACGAATGGTTT............................................................................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 0 1 0
...................................................................................................................................................CGAGAGAGTACACGGTTTTTT.................................................................................. 21 3 4 0.25 1 0 1 0 0 0 0 0 0
.............................................................GTCAAGACGAATTGTT............................................................................................................................................................................. 16 1 6 0.17 1 0 1 0 0 0 0 0 0
...........................................................CGGTCAAGACGAATT................................................................................................................................................................................ 15 1 9 0.11 1 0 0 0 0 0 0 0 1
...................................................................................................................................................CGAGAGAGTACACGGTTTTT................................................................................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................AGAGTAGGCCTAGAAGTGGT....... 20 3 13 0.08 1 0 1 0 0 0 0 0 0
...................................................................ACCAATTGTTAAGGGGG...................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0
............................................................CTTCAAGACGAATGGTT............................................................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0
...............................................................................................................................TGAGCGGATTGTGTAA........................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0
.........................................................TCCGGTCAAGACGAAT................................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0

Generated: 04/23/2015 at 03:43 AM