ID:

dsi_1914

 Coordinate:

3l:22803776-22803925 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.5 -18.5 -18.5

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_2504  2l:21843551-21843577 -
  2. dsi_1914  3l:22803788-22803814 +
star

Sense Strand Reads

TCTGCCTTGCAATTATCTTTTGCTAGGTAAACAATTGTTTGCGTAAGTAATGTAAAACCGATTGCGATCGTACAGTGTTAGCTTACTAAAATCTAAAAATATTTAAATCTCTTAAATGTCGGTGGACTTACAGATTTACTGTTATTTGTGTTATTTAGAAGAAATATACAATAATATATTGAATCTTACATTTTTTTCAGTTTTATTCGCCTGTGAGGGATTATTCCAAAACTAAGAGTGCTGCCCCAAA
**************************************************(((((...((((....))))...((((......))))....((((...((((((((.....))))))))...))))......((((((.(((((((.((((.((((.....)))))))))))))))...)))))))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 SRR902008
ovaries
 SRR902009
testis
 GSM343915
embryo
..................................................................................................................................................................................................TACAAGTTTTATTCGCCTGTGAGGGA.............................. 26 3 2 47.00 94 45 29 0 10 9 1 0 0 0 0 0
.......................................................................................................................................................................................................GTTTTATTCGCCTGTGAGG................................ 19 0 2 2.00 4 0 0 2 0 0 0 1 1 0 0 0
..................................................................................................................................................................................................TACAAGTTTTATTCGCCTGTGAGGGAT............................. 27 3 2 1.50 3 2 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ACAAGTTTTATTCGCCTGTGAGGGA.............................. 25 3 2 1.50 3 2 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCGCCTGTGAGGGATTATTCCAAAAC.................. 26 0 2 1.00 2 0 0 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TTCAGTTTTATTCGCCTGTGAGGGA.............................. 25 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTATTCCAAAACTAAGAGTGCTGCCC.... 26 0 2 1.00 2 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................TTCGCCTGTGAGGGATTATTCCAAAAC.................. 27 0 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0
............................................................................................................................................................................................................................TTATTCCAAAACTAAGAGTGCT........ 22 0 2 1.00 2 0 0 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................TGTGAGGGATTATTCCAAAACTAAGAG............ 27 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................AAGTTTTATTCGCCTGTGAGGG............................... 22 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................TTTATTCGCCTGTGAGGGATTATTCCA...................... 27 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................ACAAGTTTTATTCGCCTGTGAGG................................ 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAGTTTTATTCGCCTGTGAGG................................ 21 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................TGCGATCGTACAGTGTTAGCTTACTAA................................................................................................................................................................. 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTCGCCTGTGAGGGATTATTCCAAA.................... 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................TCCAGATCTACTGTTATTTGTGGTAT................................................................................................ 26 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................TTCGCCTGTGAGGGATTATTCCAAAACT................. 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGAGGGATTATTCCAAAACTAAGAGTGC......... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GTTTTATTCGCCTGTGAGGGAT............................. 22 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................CAAGTTTTATTCGCCTGTGAGGGA.............................. 24 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................GAGGGATTATTCCAAAACTAAGAGTGC......... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGTTTTATTCGCCTGTGAGGGA.............................. 22 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................TTTTATTCGCCTGTGAGG................................ 18 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................GTTTTATTCGCCTTTGAGG................................ 19 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AAACTAAGAGTGCTGCCCC... 19 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................ATTGAATCTTACATTTTTTTCAGT................................................. 24 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................CAAAACTAAGAGTGCTGCCCC... 21 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................GTTTTATTCGCCTGTGAGGG............................... 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AAAACTAAGAGTGCTGCC..... 18 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TACAAGTTTTATTCGCCTGTGAGGG............................... 25 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATTCCAAAACTAAGAGTGCT........ 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTATTCGCCTGTGAGGGATT............................ 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GTTTTTTTCGCCTGAGAGGTA.............................. 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................TTGTTTTCAGTTTTAT............................................ 16 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................ATTTAAATCCCTTAA....................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

AGACGGAACGTTAATAGAAAACGATCCATTTGTTAACAAACGCATTCATTACATTTTGGCTAACGCTAGCATGTCACAATCGAATGATTTTAGATTTTTATAAATTTAGAGAATTTACAGCCACCTGAATGTCTAAATGACAATAAACACAATAAATCTTCTTTATATGTTATTATATAACTTAGAATGTAAAAAAAGTCAAAATAAGCGGACACTCCCTAATAAGGTTTTGATTCTCACGACGGGGTTT
**************************************************(((((...((((....))))...((((......))))....((((...((((((((.....))))))))...))))......((((((.(((((((.((((.((((.....)))))))))))))))...)))))))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
......................................................TTTGGCTAACGCTAGCATGTCACAAT.......................................................................................................................................................................... 26 0 2 1.50 3 0 1 1 0 1 0
.........................................................................................................................................................AAATCTTCTGTATATG................................................................................. 16 1 4 1.25 5 0 0 0 5 0 0
AGACGGAACGTTAATAGAAAACGATCCAT............................................................................................................................................................................................................................. 29 0 2 1.00 2 2 0 0 0 0 0
.........................................................GGCTAACGCTAGCATGTCACAATCGAAT..................................................................................................................................................................... 28 0 2 0.50 1 0 0 0 0 1 0
.......................................................TTGGCTAACGCTAGCATGTCACAAT.......................................................................................................................................................................... 25 0 2 0.50 1 0 1 0 0 0 0
................................................................................................................................................................................................................CGGACACTCCCTAATAAGGTTTTGATT............... 27 0 2 0.50 1 0 0 0 1 0 0
.............................................................................................................................................................................................................AAGCGGACACTCCCTAATAAGGTTTTGAT................ 29 0 2 0.50 1 0 0 0 1 0 0
......................................................TTTGGCTAACGCTAGCATGTCACAA........................................................................................................................................................................... 25 0 2 0.50 1 0 1 0 0 0 0
................................................................................CGAATGATTTTAGATTTTTATAAATTT............................................................................................................................................... 27 0 2 0.50 1 0 0 1 0 0 0
.........................................................................................................TTAGAGAATTTACAGCCACCTGAATGT...................................................................................................................... 27 0 2 0.50 1 0 0 1 0 0 0
...............AGAAAACGATCCATTTGTTAACAAACGC............................................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0
.......................................................TTGGCTAACGCTAGCATGTCACAATCGA....................................................................................................................................................................... 28 0 2 0.50 1 0 0 1 0 0 0
...............................................................................................................................................................................TATAACTTAGAATGTAAAAAAAGT................................................... 24 0 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................AAGGTTTTGATTCTCACGACGGGGTTT 27 0 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................AAGGTTTTGATTCTCACGACGGGGT.. 25 0 2 0.50 1 0 1 0 0 0 0
......................................................................................................................AGCCACCTGAATGTCTAAATGACAAT.......................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0
.............................................TCATTACATTTTGGCTAACGCT....................................................................................................................................................................................... 22 0 2 0.50 1 0 1 0 0 0 0
.......................................................TTGGCTAACGCTAGCAT.................................................................................................................................................................................. 17 0 2 0.50 1 0 0 0 0 1 0
.......................................................TTGGCTAACGCTAGCATGTCACAATC......................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................ACAGCCACCTGAATGTCTAAATGACAAT.......................................................................................................... 28 0 2 0.50 1 0 0 1 0 0 0
......................................................................................................................................................................................TAGAATGTAAAAAAAGT................................................... 17 0 2 0.50 1 0 0 0 0 1 0
........................................................TGGCTAACGCTAGCATGTCACAATCGA....................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0
........................................................TGGCTAACGCTAGTATGTCACAAT.......................................................................................................................................................................... 24 1 2 0.50 1 0 1 0 0 0 0
........................................................TGGCTAACGCTAGCATGTCACAAT.......................................................................................................................................................................... 24 0 2 0.50 1 0 0 0 1 0 0
.........................................................................................................................................................AAATCTTCTTTACATG................................................................................. 16 1 7 0.29 2 0 1 1 0 0 0
..................................................................................................................................................................................................................................TTTTTGATTCTCACGACCGGTT.. 22 3 4 0.25 1 0 0 1 0 0 0
....................................................................................TGACTTTAGATCTTTATAAAAT................................................................................................................................................ 22 3 16 0.13 2 0 0 0 0 2 0
................................................................................................................................ATGTCTAAATGGCAA........................................................................................................... 15 1 9 0.11 1 0 0 1 0 0 0
.................................................................................................TTACTAATTTAGAGAATTT...................................................................................................................................... 19 2 10 0.10 1 0 0 0 1 0 0
.........................................................................................................................................................AAATCTTCTGTATAT.................................................................................. 15 1 20 0.10 2 0 0 0 2 0 0
..........................................................................................................................................................ATCCTTCTTTATATGTTAT............................................................................. 19 2 11 0.09 1 0 0 1 0 0 0
..............................................................................................................................................................................ATATAACGTAGAGTGTAAA......................................................... 19 2 12 0.08 1 0 0 0 0 1 0
........................................................................................................................................................GAAATCTTCTTTACATG................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0
.....................................................TTTTGGGTACCGCTAGCCT.................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:22803726-22803975 + dsi_1914 TCTGCCTTGCAATTATCTTTTGCTAGGTAAACAATTGTTTGCGTAAGTAATGTAAAACCGATTGC--------------------------------------GATCGTACAGTGTTAGCTTACTAAAATCTAAAAATATTTAAATCTCT---TAAATGTCGGT-------------------------------------------------------------------------------------------------------------------------------------------GGACTTACAGATTTACTGT---TATTTGTGTTATTTAGA-AGAAATATACAATA--------ATATAT--------------------------------------------------------------------------------------------TGAATCT-T-ACAT----------------------------------------------------------------TTTTTTCAGTTTTATTCGCCT---GTGAGGGATTATTCCAAAACTAAGA---GTGCTGCCCCAAA
droSec2 scaffold_41:218561-218810 + TCTGCCTTGCAATTATCTTTTGCTAGGTAAACAATTGTTTGCGTAAGTAATGTAAAACCGATTGC--------------------------------------GATCGTACAGTGTTAGCTTACTAAAATCTAAAAATATTTAAAGCTCT---TAAATGTCGGT-------------------------------------------------------------------------------------------------------------------------------------------GGACTTACAGATTTACTGT---TATTTGTGTTATTTAGA-AGAAATATACAATA--------ATATAT--------------------------------------------------------------------------------------------TGAATCT-T-ACAT----------------------------------------------------------------TTTTTTCAGTTTTATTCGCCT---GTGAGGGATTATTCTAAAACTAAGA---GTGCTGCCCCAAA
dm3 chr3L:23334247-23334424 + TTTGCCTTTCAAATTTCTTTTGCTAGGTAAACAATTGTTTGCGTAAGTAATGTAAAACTGATTGC--------------------------------------GATCGTTCAGTGTCAGTTTACTAAAATCTAAAAATATTTAAATCTCT---TAATTGCTGGT-------------------------------------------------------------------------------------------------------------------------------------------GGACTTATAGGTTTACTGT---AATTCGTGTTTTTTAGA-TGAAATATATAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATA
droEre2 scaffold_4784:22814854-22815146 - TTTGCATTTGAAATTTCTATTGCTAGGTACACAATTGTGTTTGTTAGTTATGTAAAACAGAATGCGGCTGACGTATCATATGATCGTTGATAGTGAC-AGTAAGCTCGATTAATTATATTTTTCTACAATGGAAAATTAATTAAATCTTCTCTTAAGGGTTGGA-------------------------------------------------------------------------------------------------------------------------------------------TGACGGATAGATTTAATATTATAATTTGTGTGTTTTTGAAAAAAACATAAAATA--------ATATGT--------------------------------------------------------------------------------------------TAA-TGA-T-TTTT----------------------------------------------------------------TCGTTTCAGTTTTACTCGCCT---GTGAGGGATTATTCCAAAACTAAGA---GTGCTGCCCCCAA
droYak3 3L:23919398-23919638 + TTTCCCTTTTAAAAATCTAACGCTAGGTACACAATAGTGTGCGTAAGTAATGTAAAACAGATTGCTTCTGAAGT--CACACAATCGTTGA-AGTGTCGAGTGTGCTCGATTCGTTATATTTTACTAAAATCGAAAAGTAAATAAATCTCT---TCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATATAAAATA--------ATATAT--------------------------------------------------------------------------------------------GAAATGA-T-ATTT----------------------------------------------------------------TCTTTTCAGTTTTACTCACCT---GTGAGGGATTATTCCAAAACTAAGA---GTGCTGCCCCCAA
droEug1 scf7180000408990:21492-21625 - ATTTTTG-----AATTCTTTTAATAGACTCACATTAGT----------AA-----------------------------------------------------------------------------------------------------------------------------TATTTCTGAATAAA-----------------------------------------------------------------------------------------------------------------------------------------ATACTTATATTTTTAA-A------------A--------ATATAA-----------------------------------------------------------------------------------------TAA-AAACGA---TTTT----------------------------------------------------------------CCTTTTAAGTTTTTCTCGCCT---TTAAAAG-----------ACTAAGA---GTTCTGCTCCAAT
droBia1 scf7180000297919:4195-4290 - ATATACATAC----------------------------------------------------------------------------------------------------------------------------ATATATAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------ATATTA--------------------------------------------------------------------------------------------TCA-CTT-T-TTCT----------------------------------------------------------------TCGTTTCAGTTTTACTCGCCA---GTGAGGGATTATACAAAAACTAAGA---GTGCTGCACCAAA
droTak1 scf7180000410613:48919-49058 + ACAAAAAGTAA--------------------------------------------------------------------------------------------------------------------------AAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT--A---------------------------------------AATCTATTAAAAACCTA--------CAATTTTTTATTAAA------CCGTCCAT-TTAATAAACA-------------------------------------------------------ATAATTA-AAAATT----------------------------------------------------------------TTTTTTTTATTTTTTTTATGT---ATGATGTA--ATTTAAA----AAGT---ATATTTTTTTAAG
droEle1 scf7180000490982:194934-195156 - TTTTGTA--------TGTTTTAATAAACAAGAA-ACATTTGAATATGCAACGTAAAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTT--A---------------------------------------AAATAACAAATATTTTA--------TAATCAATTTAAATATTTTTCTCTTTGGTTCTCATCCACTTCGGCTTTTAGATATAT--------------------------------------TAATTAT-T-AAATGTTTCTAAAATTTGTCAGTTTACAATTTTCGGCCA---------------------------------------------TAAAT---TTAATAACTGAAAATGTAATTAAAATTTGAACCATATTCAA
droRho1 scf7180000759995:1194-1320 + AATGTATCTGGT-------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGACTTATATTCATAAGAATGATCAAAACAATTTA------------------------------------------------------------------------------------------------------------------------------------------------TAA-----------------------------------------------------------------------------------------TAA-A-AACG-T-CTTT----------------------------------------------------------------TCTTTTCAGTTTTATTCGCCT---GTGAGGGATTATTCGAAAACAAAGA---GTGCTGCACCAAA
droFic1 scf7180000454115:121451-121538 - TGTTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGCTACAATTTTATTAA---TACTTATTTAATTACGA-CATAACATTTAAAA--------AAGACT--------------------------------------------------------------------------------------------TAAACAA-T-ACCT----------------------------------------------------------------TTTTTTCTCTTTT----------------------------------------------------
droKik1 scf7180000302543:122248-122372 + AATATTTAAGAATATATTTTTTTAATAAGAAT----------------------------TTTAG--------------------------------------GTTGGACAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------ATTTTTGT---TATTTAAAATATTTTTA-AGACATATAAATGT--------TGATAA--------------------------------------------------------------------------------------------TCAATTA-TATATT-----------------------------------------------------------------TTATTTTATTTTAT---------------------------------------------TTTAT
droAna3 scaffold_13035:2393-2581 - ATTAAATTCAATAAATTTTTAAATAAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAAATTTAATAAATAAAAAATTTAATAAA--------ATTT------TAATATTAATA-----------TTTT--------------------------------AAAATTAATA-AAAAATTTTAAATA--------AATTAT--------TAAA------TCTTAAAT------------------------------------------------------------------------T-T-CCAT----------------------------------------------------------------CGTTTTCGTTTTTGTATTGAA---AAAACAAATTTTTTTAAAATGGAAA---GTACTAAACAAAA
droBip1 scf7180000393421:6187-6356 + TTAGATT-------------------------------------------------------------------------------------------------------------------ACCAAAATCTAAAAATAAATAAATG-------AAACTTAG-------------CTACG-------------------------------------------------------------------------------------------------------------TTAACTACAATAAGGGAACTTAAATATTG----------TTGAGTTATTTTGA-AT--TGAAACAATA--------AAATTT--------------------------------------------------------------------------------------------TTTACCGCT-ACAT----------------------------------------------------------------GTTTTGGTTTTTGAAGCAC-AACTGTGAAGGCCAATTTTAAAATAAATA---GCG----------
dp5 XL_group3a:1304594-1304721 - TGGAAT----------------------------------------------------------------------------------------------------------------------------ATACATATAATTAAATTTAT---TAAAAATCGTTGGACTTGGTAAAGTTATTGACTAC-------------------------------------------------------------------------------------------------------------------------------------A---TATGTATGTATTTTTAA-AAGCCTCTACAGAACTCCAATAAT--TA--------------------------------------------------------------------------------------------TCT-TGA-T-TGAT----------------------------------------------------------------TTGTTTCAATTT-----------------------------------------------------
droPer2 scaffold_6:3829644-3829811 + AAGTCA------------------------------------------------------ATTAT--------------------------------------GATGGCCCATAATTAATTT-----------------------------------------------------------------------------------AAATATATAAAACACTTTAAAATAAATTTAATATATTACATTTATAGGAAA--------TATA------TTAGAT-------------------------------------------------------------------TTATATATGA--------AAATAT--------------------------------------------------------------------------------------------TTAATTATG-AAAA---------------------------------------------------------------------------TTTTATAAAT---TTAATAAACTAAATAGAAATTAATT---ATGATAGCCTATA
droWil2 scf2_1100000004762:405278-405439 - TGTTTGTTT-----------------------------------------------------------------------------------------------------------------ACTTAAAT------TTATTTAAATTACT---TAACC------------------------------------------------------------AT------------------------------------TTGATTACATTTTTTATTTTCGGT----------------------------------------------------TTCGGTTTGT-AAATATTTCTACTT--------GTATTT-----------------------------------------------------------------------TATTTTATGTTGTACT-----------------AT-----------------GTT--TATGC-------------------------------TCG--------------TGTGACAC-----ATGA-AAAGTATTTCTTAACTTAT-------GGACTTCTAT
droVir3 scaffold_12723:1121666-1121898 - TGTAATTTA-------CTTTTG----GTA----TTTGTTTGTATAAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGATGTAAAGAA-----------------------------------------------------------------------------CTTTT--A---------------------------------------TAGCTTCTCAATATTTA--------CAATAAATTTCAAAATTTTC--TTTTGGTTGCCTTAAACAT-------TTTTTGTAATTTATGTTTATAGTTTGTGCTGTTTTTTATTTTTA----------------------------------------AACCTTTTGCAATTGCTTCAATAAGAGATTGAATTTCGTTTGGTTTTCAGTTGTTTTTGCTT---TTCACGCACTTTTCCA------------------------A
droMoj3 scaffold_6680:13876073-13876298 - TCTGCGTCTACAGTAC--------------------------------------------GTCAA--------------------------------------GTTGGCCAG---------------------------------TTTAT---GAAGCATTATTTAAATTAACAAATTTCT-AAATAT-----------------------GTAC--------TT--AAAATTTATTTATTTATTTATTTAT----TTATTTTTATTTTTTTTTTTTATT----ACCAATTAATTCCTATAAATTTATTTA--------------------------------------------------------------------------------------------------------------------------TATAGTATTTATTCTTTATTTTATTTA----------------------------------------GACCAA----------------------------------------------------CTAA---TTTATGTATTCATTTATAATTGATT---TTATTTACTTTAA
droGri2 scaffold_14906:13557923-13558092 - GCACATT----------------------------------------------------------------------------------------------------------------------AATATATATGTATATTTAAATTTAT---AAAGCGTAA-------------CGTTG---------------------------------------------------------------------------------------------------------------------TTGT--AGATTTATAGATATACC----------ACGTTTCCTTAA-GAAATTATATAATA--------ATTATT--------------------------------------------------------------------------------------------CATTTAC-T-TGTT----------------------------------------------------------------TATTTTCAGTTTTATTCCCCT---ATTAGGGATTATTCTAAAACAAAGA---GTGCAGCTCCGAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCTGCCTTGCAATTATCTTTTGCTAGGTAAACAATTGTTTGCGTAAGTAATGTAAAACCGATTGC--------------------------------------GATCGTACAGTGTTAGCTTACTAAAATCTAAAAATATTTAAATCTCT---TAAATGTCGGT-------------------------------------------------------------------------------------------------------------------------------------------GGACTTACAGATTTACTGT---TATTTGTGTTATTTAGA-AGAAATATACAATA--------ATATAT--------------------------------------------------------------------------------------------TGAATCT-T-ACAT----------------------------------------------------------------TTTTTTCAGTTTTATTCGCCT---GTGAGGGATTATTCCAAAACTAAGA---GTGCTGCCCCAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATTCGCCT---GTGAGG...................................1922.00401120000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCT---GTGAGGGATTATTCCAAAAC.....................2621.00200010000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTTTATTCGCCT---GTGAGGGA.................................2521.00200000002000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTCCAAAACTAAGA---GTGCTGCCC....2621.00200000010000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCT---GTGAGGGATTATTCCAAAAC.....................2721.00200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTCCAAAACTAAGA---GTGCT........2221.00201010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GTGAGGGATTATTCCAAAACTAAGA---G............2720.50100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCGCCT---GTGAGGGATTATTCCA.........................2720.50100000000001000000
..............................................................TGC--------------------------------------GATCGTACAGTGTTAGCTTACTAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCT---GTGAGGGATTATTCCAAA.......................2520.50100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCT---GTGAGGGATTATTCCAAAACT....................2820.50100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGGATTATTCCAAAACTAAGA---GTGC.........2820.50100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATTCGCCT---GTGAGGGAT................................2220.50101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGATTATTCCAAAACTAAGA---GTGC.........2720.50100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTATTCGCCT---GTGAGGGA.................................2220.50100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTCGCCT---GTGAGG...................................1820.50101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTAAGA---GTGCTGCCCC...1920.50100000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................AT--------------------------------------------------------------------------------------------TGAATCT-T-ACAT----------------------------------------------------------------TTTTTTCAGT.......................................................2420.50100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACTAAGA---GTGCTGCCCC...2120.50100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATTCGCCT---GTGAGGG..................................2020.50100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTAAGA---GTGCTGCC.....1820.50100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAAACTAAGA---GTGCT........2020.50100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTCGCCT---GTGAGGGATT...............................2020.50100010000000000000
droSec2
TCTGCCTTGCAATTATCTTTTGCTAGGTAAACAATTGTTTGCGTAAGTAATGTAAAACCGATTGC--------------------------------------GATCGTACAGTGTTAGCTTACTAAAATCTAAAAATATTTAAAGCTCT---TAAATGTCGGT-------------------------------------------------------------------------------------------------------------------------------------------GGACTTACAGATTTACTGT---TATTTGTGTTATTTAGA-AGAAATATACAATA--------ATATAT--------------------------------------------------------------------------------------------TGAATCT-T-ACAT----------------------------------------------------------------TTTTTTCAGTTTTATTCGCCT---GTGAGGGATTATTCTAAAACTAAGA---GTGCTGCCCCAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCCT---GTGAGGGATT...............................1814.0040040
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTCTAAAACTAAGA---GTGC.........2312.0021001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATTCGCCT---GTGAGG...................................1912.0020020
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTCGCCT---GTGAGG...................................1812.0020020
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTAAGA---GTGCTGCCCCA..2012.0021100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTATTCGCCT---GTGAGG...................................2011.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGA---GTGCTGCCCCAA.1811.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCCT---GTGAGGGATTATTCTA.........................2411.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCT---GTGAGGGATTATTCT..........................2111.0010001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTCTAAAACTAAGA---GT...........2111.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCCT---GTGAGGGATTATTC...........................2211.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCGCCT---GTGAGGG..................................1811.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCGCCT---GTGAGGGATTATTCTA.........................2711.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTCGCCT---GTGAGGGATT...............................2011.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTAAGA---GTGCTGCCCCAAA2311.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---GTGAGGGATTATTCTA.........................1811.0010001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAACTAAGA---GTGCTGCCC....2111.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATTCGCCT---GTGAGGGATTATTCT..........................2811.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACTAAGA---GTGCTGCCCC...2111.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCT---GTGAGGGATTATTC...........................2111.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTAAAACTAAGA---GTGCTGCCCC...2611.0010010
.................................................................................................................................................................................................................................................................................................................................T---TATTTGTGTTATTTAGA-AGAAAT.................................................................................................................................................................................................................................................................2411.0010001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTAAGA---GTGCTGCCCCA..1911.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCGCCT---GTGAGGGATTATTCT..........................2611.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATTCGCCT---GTGAGGG..................................2011.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTCTAAAACTAAGA---GTGCT........2411.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATTCGCCT---GTGAGGGATT...............................2311.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTATTCGCCT---GTGAGGGATT...............................2411.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTCGCCT---GTGAGGGA.................................2011.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTATTCGCCT---GTGAG....................................1911.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTAAAACTAAGA---GTGCTGC......2211.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTAAGA---GTGCTGCCCC...1911.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTCGCCT---GTGAGGG..................................1911.0010010
dm3
TTTGCCTTTCAAATTTCTTTTGCTAGGTAAACAATTGTTTGCGTAAGTAATGTAAAACTGATTGC--------------------------------------GATCGTTCAGTGTCAGTTTACTAAAATCTAAAAATATTTAAATCTCT---TAATTGCTGGT-------------------------------------------------------------------------------------------------------------------------------------------GGACTTATAGGTTTACTGT---AATTCGTGTTTTTTAGA-TGAAATATATAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................TTCGTGTTTTTTAGA-TGA....................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CTTATAGGTTTACTGT---AATTCGTG.................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TCT---TAATTGCTGGT-------------------------------------------------------------------------------------------------------------------------------------------GGACTTATAGGT...................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AGGTTTACTGT---AATTCGTGTTTTTT...........................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CTTATAGGTTTACTGT---AATTCGTGT................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AATTGCTGGT-------------------------------------------------------------------------------------------------------------------------------------------GGACTTATAGG....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CTTTTGCTAGGTAAACAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TGC--------------------------------------GATCGTTCAGTGTCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AAACTGATTGC--------------------------------------GATCGTTCAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............TTCTTTTGCTAGGTAAACGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
droEre2
TTTGCATTTGAAATTTCTATTGCTAGGTACACAATTGTGTTTGTTAGTTATGTAAAACAGAATGCGGCTGACGTATCATATGATCGTTGATAGTGAC-AGTAAGCTCGATTAATTATATTTTTCTACAATGGAAAATTAATTAAATCTTCTCTTAAGGGTTGGA-------------------------------------------------------------------------------------------------------------------------------------------TGACGGATAGATTTAATATTATAATTTGTGTGTTTTTGAAAAAAACATAAAATA--------ATATGT--------------------------------------------------------------------------------------------TAA-TGA-T-TTTT----------------------------------------------------------------TCGTTTCAGTTTTACTCGCCT---GTGAGGGATTATTCCAAAACTAAGA---GTGCTGCCCCCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTACTCGCCT---GTGAGGGATT...............................2414.0040000004
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTCCAAAACTAAGA---GTGCT........2414.0040000400
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTACTCGCCT---GTGAGGG..................................2113.0030002100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTAAGA---GTGCTGCCCC...1913.0031000200
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTACTCGCCT---GTGAGG...................................1913.0032000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGCCT---GTGAGGGATTATTCCA.........................2512.0020000200
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTCCAAAACTAAGA---GT...........2112.0020000200
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAAACTAAGA---GTGCTGC......2212.0020100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAGA---GTGCTGCCCCCA.1912.0020000110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTACTCGCCT---GTGAGG...................................2012.0021001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCT---GTGAGGGATTATTCCA.........................2012.0021000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTAAGA---GTGCTGCCCCCA.2012.0022000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTCCAAAACTAAGA---GTGCTGCCC....2811.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCT---GTGAGGGATTATTCCAAA.......................2611.0010000100
......................................GTTTGTTAGTTATGTAAAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCT---GTGAGGGATTATTCCAAAAC.....................2511.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCT---GTGAGGGATTATTCCAA........................2011.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGA---GTGCTGCCCCCA.1811.0010010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTCGCCT---GTGAGGGATTATTCC..........................2611.0010100000
...........................................TTAGTTATGTAAAACAGAATGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTCGCCT---GTGAGGGATTATTCCA.........................2711.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTCCAAAACTAAGA---GC...........2111.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCT---GTGAGGGATTATTCCA.........................2111.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCT---GTGAGGGATTATTCCAAA.......................2311.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCT---GTGAGGGATTATTCCA.........................1911.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTACTCGCCT---GTGAGGGAT................................2211.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTACTCGCCT---GTGAG....................................1811.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCT---GTGAGGGATTATTCCAAAA......................2611.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTACTCGCCT---GTGAGGGATTA..............................2511.0011000000
..................................................................................................................................................CTTCTCTTAAGGGTTGGA-------------------------------------------------------------------------------------------------------------------------------------------TGACGG.........................................................................................................................................................................................................................................................................................................2411.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GTGAGGGATTATTCCAAAA......................2011.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCT---GTGAGGGATTATTCC..........................1911.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCCAAAACTAAGA---GTGCTGCCCC...2611.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGATTATTCCAAAA......................1911.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAAACTAAGA---GTGCTGCCC....2411.0010000100
......................................................................................................................................................TCTTAAGGGTTGGA-------------------------------------------------------------------------------------------------------------------------------------------TGACGG.........................................................................................................................................................................................................................................................................................................2011.0010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCT---GTGAGGGATTATTCCAAAACT....................2611.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCGCCT---GTGAGGGA.................................1811.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCT---GTGAGGGATTATTCCA.........................2211.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTAAGA---GTGCTGCCCCC..1911.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTACTCGCCT---GTGAGGGATT...............................2311.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTACTCGCCT---GTGAGGGATTATTCCA.........................2911.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTCGCCT---GTGAGGGAT................................2111.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAAACTAAGA---GTGCTGCCCCCA.2511.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCT---GTGAGGGATTATTCC..........................2011.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCT---GTGAGGGATTATTCCAAAACT....................2411.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTAAGA---GTGCTGCCCCCA.2111.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTCGCCT---GTGAGGG..................................1911.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTCCAAAACTAAGA---GTG..........2011.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAGA---GTGCTGCCCCC..1811.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTCGCCT---GTGAGGGATTATTCCA.........................2811.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTCCAAAACTAAGA---GTGC.........2311.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCT---GTGAGGGATTATTCCAAAA......................2411.0010000100
..............................................................................................................................................................GTTGGA-------------------------------------------------------------------------------------------------------------------------------------------TGACGGATAGATTTAATATT...........................................................................................................................................................................................................................................................................................2611.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCCAAAACTAAGA---GTGCT........2111.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---GTGAGGGATTATTCCAA........................1911.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAAAACTAAGA---GTGCTGCCCC...2411.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTAAGA---GTGCTGCCCCC..2011.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCT---GTGAGGGATTATTCCA.........................2411.0011000000
droYak3
TTTCCCTTTTAAAAATCTAACGCTAGGTACACAATAGTGTGCGTAAGTAATGTAAAACAGATTGCTTCTGAAGT--CACACAATCGTTGA-AGTGTCGAGTGTGCTCGATTCGTTATATTTTACTAAAATCGAAAAGTAAATAAATCTCT---TCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATATAAAATA--------ATATAT--------------------------------------------------------------------------------------------GAAATGA-T-ATTT----------------------------------------------------------------TCTTTTCAGTTTTACTCACCT---GTGAGGGATTATTCCAAAACTAAGA---GTGCTGCCCCCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTCCAAAACTAAGA---GTGCTGC......2615.00501000040000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTACTCACCT---GTGAGG...................................1915.00505000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTCCAAAACTAAGA---GTGCT........2414.00400000040000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTACTCACCT---GTGAGGGATT...............................2313.00300000120000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTCCAAAACTAAGA---GT...........2113.00300000030000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCT---GTGAGGGATTATTCCA.........................2112.00200000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTCCAAAACTAAGA---GTGC.........2312.00200000020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCT---GTGAGGGATTATTCCA.........................2012.00200000020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTAAGA---GTGCTGCCCCC..2012.00200001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTAAGA---GTGCTGCCCCC..2112.00200000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTACTCACCT---GTGAGGGATT...............................2412.00200000020000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAAACTAAGA---GTGCT........2012.00200000020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGGATTATTCCAAAACTAAGA---G............2511.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAACTAAGA---GTGCTGCCCC...2211.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTCCAAAACTAAGA---GTGCT........2311.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTCACCT---GTGAGGGATTATT............................2411.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCT---GTGAGGGATTATTCCAAAAC.....................2611.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTAAGA---GTGCTGCCCCCA.2011.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTCCAAAACTAAGA---GTGCTG.......2411.00100000010000
........................................................................................GA-AGTGTCGAGTGTGCTCGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTCCAAAACTAAGA---GTGC.........2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTACTCACCT---GTGAGGGAT................................2311.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCT---GTGAGGGATTATTCCAAAA......................2411.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCT---GTGAGGGATTATTCCAA........................2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTCACCT---GTGAGG...................................1811.00101000000000
.................................................................................AATCGTTGA-AGTGTCGAGTGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000
.....................................................................GAAGT--CACACAATCGTTGA-AGTGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCT---GTGAGGGATTATTCCAAAAC.....................2311.00110000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCT---GTGAGGGATTATTCC..........................1911.00100100000000
.................................ATAGTGTGCGTAAGTAATGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAAACTAAGA---GTGCTGC......2011.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTCCAAAACTAAGA---GTGCTGCCCCC..3011.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCCAAAACTAAGA---GTGCTGCCCC...2611.00101000000000
droEug1
ATTTTTG-----AATTCTTTTAATAGACTCACATTAGT----------AA-----------------------------------------------------------------------------------------------------------------------------TATTTCTGAATAAA-----------------------------------------------------------------------------------------------------------------------------------------ATACTTATATTTTTAA-A------------A--------ATATAA-----------------------------------------------------------------------------------------TAA-AAACGA---TTTT----------------------------------------------------------------CCTTTTAAGTTTTTCTCGCCT---TTAAAAG-----------ACTAAGA---GTTCTGCTCCAATSizeHit CountTotal NormTotal
No Reads
droBia1
ATATACATAC----------------------------------------------------------------------------------------------------------------------------ATATATAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------ATATTA--------------------------------------------------------------------------------------------TCA-CTT-T-TTCT----------------------------------------------------------------TCGTTTCAGTTTTACTCGCCA---GTGAGGGATTATACAAAAACTAAGA---GTGCTGCACCAAASizeHit CountTotal NormTotal
No Reads
droTak1
ACAAAAAGTAA--------------------------------------------------------------------------------------------------------------------------AAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT--A---------------------------------------AATCTATTAAAAACCTA--------CAATTTTTTATTAAA------CCGTCCAT-TTAATAAACA-------------------------------------------------------ATAATTA-AAAATT----------------------------------------------------------------TTTTTTTTATTTTTTTTATGT---ATGATGTA--ATTTAAA----AAGT---ATATTTTTTTAAGSizeHit CountTotal NormTotal
No Reads
droEle1
TTTTGTA--------TGTTTTAATAAACAAGAA-ACATTTGAATATGCAACGTAAAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTT--A---------------------------------------AAATAACAAATATTTTA--------TAATCAATTTAAATATTTTTCTCTTTGGTTCTCATCCACTTCGGCTTTTAGATATAT--------------------------------------TAATTAT-T-AAATGTTTCTAAAATTTGTCAGTTTACAATTTTCGGCCA---------------------------------------------TAAAT---TTAATAACTGAAAATGTAATTAAAATTTGAACCATATTCAASizeHit CountTotal NormTotal
No Reads
droRho1
AATGTATCTGGT-------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGACTTATATTCATAAGAATGATCAAAACAATTTA------------------------------------------------------------------------------------------------------------------------------------------------TAA-----------------------------------------------------------------------------------------TAA-A-AACG-T-CTTT----------------------------------------------------------------TCTTTTCAGTTTTATTCGCCT---GTGAGGGATTATTCGAAAACAAAGA---GTGCTGCACCAAASizeHit CountTotal NormTotal
No Reads
droFic1
TGTTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGCTACAATTTTATTAA---TACTTATTTAATTACGA-CATAACATTTAAAA--------AAGACT--------------------------------------------------------------------------------------------TAAACAA-T-ACCT----------------------------------------------------------------TTTTTTCTCTTTT----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AATATTTAAGAATATATTTTTTTAATAAGAAT----------------------------TTTAG--------------------------------------GTTGGACAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------ATTTTTGT---TATTTAAAATATTTTTA-AGACATATAAATGT--------TGATAA--------------------------------------------------------------------------------------------TCAATTA-TATATT-----------------------------------------------------------------TTATTTTATTTTAT---------------------------------------------TTTATSizeHit CountTotal NormTotal
No Reads
droAna3
ATTAAATTCAATAAATTTTTAAATAAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAAATTTAATAAATAAAAAATTTAATAAA--------ATTT------TAATATTAATA-----------TTTT--------------------------------AAAATTAATA-AAAAATTTTAAATA--------AATTAT--------TAAA------TCTTAAAT------------------------------------------------------------------------T-T-CCAT----------------------------------------------------------------CGTTTTCGTTTTTGTATTGAA---AAAACAAATTTTTTTAAAATGGAAA---GTACTAAACAAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................T--------TAAA------TCTTAAAT------------------------------------------------------------------------T-T-CCAT----------------------------------------------------------------CGT..............................................................2211.001010000
droBip1
TTAGATT-------------------------------------------------------------------------------------------------------------------ACCAAAATCTAAAAATAAATAAATG-------AAACTTAG-------------CTACG-------------------------------------------------------------------------------------------------------------TTAACTACAATAAGGGAACTTAAATATTG----------TTGAGTTATTTTGA-AT--TGAAACAATA--------AAATTT--------------------------------------------------------------------------------------------TTTACCGCT-ACAT----------------------------------------------------------------GTTTTGGTTTTTGAAGCAC-AACTGTGAAGGCCAATTTTAAAATAAATA---GCG----------SizeHit CountTotal NormTotal
No Reads
dp5
TGGAAT----------------------------------------------------------------------------------------------------------------------------ATACATATAATTAAATTTAT---TAAAAATCGTTGGACTTGGTAAAGTTATTGACTAC-------------------------------------------------------------------------------------------------------------------------------------A---TATGTATGTATTTTTAA-AAGCCTCTACAGAACTCCAATAAT--TA--------------------------------------------------------------------------------------------TCT-TGA-T-TGAT----------------------------------------------------------------TTGTTTCAATTT-----------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AAGTCA------------------------------------------------------ATTAT--------------------------------------GATGGCCCATAATTAATTT-----------------------------------------------------------------------------------AAATATATAAAACACTTTAAAATAAATTTAATATATTACATTTATAGGAAA--------TATA------TTAGAT-------------------------------------------------------------------TTATATATGA--------AAATAT--------------------------------------------------------------------------------------------TTAATTATG-AAAA---------------------------------------------------------------------------TTTTATAAAT---TTAATAAACTAAATAGAAATTAATT---ATGATAGCCTATASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGTTTGTTT-----------------------------------------------------------------------------------------------------------------ACTTAAAT------TTATTTAAATTACT---TAACC------------------------------------------------------------AT------------------------------------TTGATTACATTTTTTATTTTCGGT----------------------------------------------------TTCGGTTTGT-AAATATTTCTACTT--------GTATTT-----------------------------------------------------------------------TATTTTATGTTGTACT-----------------AT-----------------GTT--TATGC-------------------------------TCG--------------TGTGACAC-----ATGA-AAAGTATTTCTTAACTTAT-------GGACTTCTATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TGTAATTTA-------CTTTTG----GTA----TTTGTTTGTATAAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGATGTAAAGAA-----------------------------------------------------------------------------CTTTT--A---------------------------------------TAGCTTCTCAATATTTA--------CAATAAATTTCAAAATTTTC--TTTTGGTTGCCTTAAACAT-------TTTTTGTAATTTATGTTTATAGTTTGTGCTGTTTTTTATTTTTA----------------------------------------AACCTTTTGCAATTGCTTCAATAAGAGATTGAATTTCGTTTGGTTTTCAGTTGTTTTTGCTT---TTCACGCACTTTTCCA------------------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TCTGCGTCTACAGTAC--------------------------------------------GTCAA--------------------------------------GTTGGCCAG---------------------------------TTTAT---GAAGCATTATTTAAATTAACAAATTTCT-AAATAT-----------------------GTAC--------TT--AAAATTTATTTATTTATTTATTTAT----TTATTTTTATTTTTTTTTTTTATT----ACCAATTAATTCCTATAAATTTATTTA--------------------------------------------------------------------------------------------------------------------------TATAGTATTTATTCTTTATTTTATTTA----------------------------------------GACCAA----------------------------------------------------CTAA---TTTATGTATTCATTTATAATTGATT---TTATTTACTTTAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCACATT----------------------------------------------------------------------------------------------------------------------AATATATATGTATATTTAAATTTAT---AAAGCGTAA-------------CGTTG---------------------------------------------------------------------------------------------------------------------TTGT--AGATTTATAGATATACC----------ACGTTTCCTTAA-GAAATTATATAATA--------ATTATT--------------------------------------------------------------------------------------------CATTTAC-T-TGTT----------------------------------------------------------------TATTTTCAGTTTTATTCCCCT---ATTAGGGATTATTCTAAAACAAAGA---GTGCAGCTCCGACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:16 AM