ID:

dsi_19135

 Coordinate:

3l:7933427-7933489 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7933295_7933426_+]; CDS [3l_7933295_7933426_+]; CDS [3l_7933490_7933702_+]; exon [3l_7933490_7934543_+]; intron [3l_7933427_7933489_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------##################################################
CATTTGGTGGCTTCTTTGCCTCTGGATTTAAGAGAGCTTTCAAAATTAAGGTAAGTACTCTTTTTGGAACACAGGTCTTTTCAATTTAACGCAACACGCCATCTCGTTTGCAGGACTTTGGTGACATGATACCCGGACATGGCGGCATTATGGATCGTTTCGA
**************************************************.........((.............................(((..(((......))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M023
head
 M024
male body		 M025
embryo
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
..............................................................................................................................................CGGCATTATGGATCGTTTCGA 21 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0
.........................................................................................................GTTTGCAGGACTTCGGCGACAA.................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................GAGAGCTTTCAAAATTAAGGACC............................................................................................................. 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................CATGGCGGGATTATGGATCGT..... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......TGGCTTCTTTGCCTCTGGATT....................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................CCATCTCGTTTGCAGGACTTT............................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
................................AGAGCTTTCAAAATTAAG................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................GTTTGCAGGACTTCGGCGAC...................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................TTAAGAGAGCTTTCAAAATTAAGGAC.............................................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................ATACCCGGACATGGCGGCATTT............. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................GGGAGAGCTTTCAAAATTAAG................................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............CTTTGCCTCTGGATTTAA.................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................ACACGCCATCTCGTTTGCAGGACT.............................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................AAGGACTTCGGCGACATGATACCCGGACA........................ 29 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................TCTGGATTTAAGAGAGCT............................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................GAGCTTTCAAAATTAAGGACT............................................................................................................. 21 3 4 0.75 3 0 0 0 3 0 0 0 0 0 0
.................................GAGCTTTCAAAATTAAGGACC............................................................................................................. 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................ACCGGGACATGGCGGC................. 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................CCGGGACATGGCGGC................. 15 1 9 0.33 3 3 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGAAAACCGGACATGGC.................... 17 2 20 0.25 5 0 5 0 0 0 0 0 0 0 0
..................................................................................................................................ACCGGGACATGGCGG.................. 15 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................GCGACATGATGCCCGGACAC....................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0
...........................................................CTTGTTGGAACTCAGGTTTT.................................................................................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0
................................................................TGGAACACAGGTGTT.................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 0 0 1 0
...................................................................AACACAGGTCTGTTCGA............................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 0 1 0
...................................................................AACACAGGTCTTTGCGA............................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 0 1 0
....................................................................ACACAGGTCTGTTCGA............................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................AAAACCGGACATGGCG................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........................................................CCTCTTTTTGGACCAAAGG........................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTAAACCACCGAAGAAACGGAGACCTAAATTCTCTCGAAAGTTTTAATTCCATTCATGAGAAAAACCTTGTGTCCAGAAAAGTTAAATTGCGTTGTGCGGTAGAGCAAACGTCCTGAAACCACTGTACTATGGGCCTGTACCGCCGTAATACCTAGCAAAGCT
**************************************************.........((.............................(((..(((......))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.....................GACCTAAGTTCTCTCGAAAGTTT....................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..........................................................AGAAAAACCTTGTGTCCAGAA.................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.......ACCCAAGAAAGGGAGACC.......................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0
..................................................................................................................................TGGGCCTGTAGCGCGGT................ 17 2 9 0.22 2 0 0 2 0 0
.................................................................................................................................ATGGGCCTGGACAGCCG................. 17 2 7 0.14 1 1 0 0 0 0
..................................................................................................................................TGGGCCTGTAGCGCGGTTA.............. 19 3 14 0.14 2 0 0 1 1 0
...........................................................................AGAAAAGTTCGATTGCG....................................................................... 17 2 20 0.05 1 0 0 0 1 0
..................................TCGAAAGTTTTACTTCG................................................................................................................ 17 2 20 0.05 1 0 0 0 0 1
...........................................................................AGAAAAGTTACATTG......................................................................... 15 1 20 0.05 1 0 1 0 0 0
.................................CTCGAAAGTTATAAT................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0
......................................................CATGAGGAACACCTTGT............................................................................................ 17 2 20 0.05 1 0 0 0 0 1

Generated: 04/24/2015 at 10:33 AM