ID:

dsi_19122

 Coordinate:

2l:9613690-9613950 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.5 -14.5 -14.4

Flybase annnotation

CDS [2l_9613671_9613689_+]; five_prime_UTR [2l_9613544_9613670_+]; CDS [2l_9613951_9614117_+]; exon [2l_9613951_9614117_+]; exon [2l_9613544_9613689_+]; intron [2l_9613690_9613950_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTTTTATTTAAGAGTGAACCACCTTAGAAAATGTCTGCCGCGACCAAAGGTAACTATGTGAATCCTTTAGGATATGCCTATGCTGTTGGTAGTCTAGATAAGAGATCATCTCGCTTGAGAGATCTGAACTTTGGACTTGTTGGTGTCTTATCTGATGCTATATCCCCCCCGCGCCCAGCCGGTTGCACTTTGGACCTGTTGAATCGAAAACAAAAATCCGCCTTCGTTCGAGCTAAATTTGTGCTATCACTCTGCCTACGCACATTATATATGTCGTACATATGTTCATATGTATCTTCTCCCTTGTAAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTTGGAACCTTCGGTGGA
***********************************************************************************************************************************************************************************************.(((..((((........))))....))).........(((..((.((.(((((...............)))))..)).))..)))(((((((....)))))))..**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
...............TGAACCACCTTAGAAAATG....................................................................................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................TACGGCCTTTGGAACCTTCGGTGGA 25 0 1 2.00 2 0 2 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................CGTACGGCCTTTGGAACCTT....... 20 0 1 2.00 2 2 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................GCTAAAGTTGAGCTATCA............................................................................................................... 18 2 12 1.75 21 0 0 0 21 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................GTGGCTGCCAAGCGTACGGCC.................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................TAGAAAATGTCTGCCGCAACCAAAG....................................................................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................AAAAACTCTGCCTACGCACATTATA........................................................................................... 25 3 1 1.00 1 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................TATGTCGTACATATGTTCATATGTATC................................................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0
.....TATTTAAGAGTGAACCACC................................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGACCTGTTGAATCGAAAACAAAAA................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................CACTTTGGACCTGTTGAATCG.......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGACCTGTTGAATCGAAAA...................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................CGCTTGAGAGATCTGAACT...................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................TACGGCCTTCGGAACCTTCGGTGGA 25 1 1 1.00 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................................ATTTGTGCTATCACTCTGCCC....................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................................TGGACTCGTTGGTGTCTTAT................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................................................GAGATCATCTCGCTTGAGAGA.............................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................TACGAGATCATTTCGCATGAGA................................................................................................................................................................................................................................................ 22 3 1 1.00 1 0 0 0 0 1 0 0 0
...........AGAGTGAACCACCTGA.............................................................................................................................................................................................................................................................................................................................................. 16 1 4 0.50 2 0 0 0 0 2 0 0 0
...............................................................................................................TCGCTTGAGAGAACT........................................................................................................................................................................................................................................... 15 1 7 0.43 3 0 2 0 0 1 0 0 0
.........................................................................................................................................................................................................................................CTAAAGTTGAGCTATCACT............................................................................................................. 19 2 3 0.33 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................ACGGCTTTTGGATCATTCGG.... 20 3 4 0.25 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................................CTTCGGACCTGATGAAAC........................................................................................................................................................... 18 3 20 0.25 5 2 0 3 0 0 0 0 0
.......................................................................................................................................ACCTGTTGGTGTCTTAGCGG.............................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TGTGGCGGCCAAGCGGACCG.................... 20 3 8 0.13 1 0 0 0 1 0 0 0 0
.........CAAGAGTGAACCACC................................................................................................................................................................................................................................................................................................................................................. 15 1 9 0.11 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................GTGGCGGCCAAGCGTGCG..................... 18 2 9 0.11 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................AGCTAAAGTTGAGCTATC................................................................................................................ 18 2 10 0.10 1 0 0 0 1 0 0 0 0
....TTATTTGAAAATGAACCACC................................................................................................................................................................................................................................................................................................................................................. 20 3 20 0.10 2 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TGTGGCTGCCAATCGT........................ 16 1 12 0.08 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................GTGGCAGTCAAGCGTAC...................... 17 2 14 0.07 1 0 0 0 0 1 0 0 0
........GCAAGAGTGAACCACCTGA.............................................................................................................................................................................................................................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................GTTGAATCGATAAAAAAAA................................................................................................................................................ 19 2 19 0.05 1 0 0 0 0 0 0 1 0
.............................................................................................TCTAAATAAGAGATCCT........................................................................................................................................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 1 0 0 0
................................................................................................................CGCTTGAGAGAACTGC......................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................GCTAAAGTTGAGCTATCAG.............................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................GCCTTCGCTCGAGCGA............................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................TCTGGTACCTTCGGTG.. 16 2 20 0.05 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................GTTGAATCGAAAAAAAAAAA............................................................................................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 1 0
........................................................................................GGTAGTCAAGATGAGA................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0
........GCAAGAGTGAACCACCTG............................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................CTAAAGTTGAGCTATCAGT............................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................TCATATGTATCCTCTCGG......................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0
............AAGTGAACGACCGTAGAA........................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

ACAAAATAAATTCTCACTTGGTGGAATCTTTTACAGACGGCGCTGGTTTCCATTGATACACTTAGGAAATCCTATACGGATACGACAACCATCAGATCTATTCTCTAGTAGAGCGAACTCTCTAGACTTGAAACCTGAACAACCACAGAATAGACTACGATATAGGGGGGGCGCGGGTCGGCCAACGTGAAACCTGGACAACTTAGCTTTTGTTTTTAGGCGGAAGCAAGCTCGATTTAAACACGATAGTGAGACGGATGCGTGTAATATATACAGCATGTATACAAGTATACATAGAAGAGGGAACATTCCATAGATATAACACCGACGGTTCGCATGCCGGAAACCTTGGAAGCCACCT
****************************************************************.(((..((((........))))....))).........(((..((.((.(((((...............)))))..)).))..)))(((((((....)))))))..*********************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body
...............................................................AGGAAATCCTATACGGACACGACAACCT.............................................................................................................................................................................................................................................................................. 28 2 1 4.00 4 4 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CGGAAGCAAGCTCGATTTAAACACGAT.................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGGCGGAAGCAAGCTCGATTTAAACACGA................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................AGCGGACTCTCTAGGCTT........................................................................................................................................................................................................................................ 18 2 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TTGTTTTTAGGCGGAAGCAAGCTCGA.............................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................TAGTGAGCCGGATGCGTGA................................................................................................ 19 2 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................TTTTAGGCGGAAGGAGGGTCG............................................................................................................................... 21 3 2 1.00 2 0 0 0 0 2 0 0 0
.................................................................................................................................................................................................................TTGTTTTTAGGCGGAAGCAAGCTCGATT............................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGCGGAAGCAAGCTCGATTTAAACAC..................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................CGGAAGCAAGCTCGATTTAAACAC..................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................GCGGACTCTCTAGGCTTG....................................................................................................................................................................................................................................... 18 2 1 1.00 1 0 0 0 0 0 1 0 0
...................................................................................................ATTCTCTAGTAGAGCGAACTCTCT.............................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGAAGCAAGCTCGATTTAAACACGAT.................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................CGGAAGCAAGCTCGATTTAAACACGA................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGGCGGAAGCAAGCTCGATTTAAACACGAT.................................................................................................................. 30 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAGCAAGCTCGATTTAAACACGATAGT............................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TAGGCGGAAGCAAGCTCGATTTAAACACGAT.................................................................................................................. 31 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................ACGTGAAACCTGGACAACTTAGCTTTT...................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTCGATTTCAACTCGATAGT............................................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................................................ACTCTCTAGGCTTGA...................................................................................................................................................................................................................................... 15 1 4 0.75 3 0 3 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................AGAGTGAACGTTCGATAGATAT......................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTCGGCGGAAGCTAGCTCGA.............................................................................................................................. 21 2 2 0.50 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................AGACTACGAGATAGG................................................................................................................................................................................................... 15 1 7 0.43 3 0 0 3 0 0 0 0 0
.......................................................................................................................................................................................................................................TCGATTTCAACTCGATAGT............................................................................................................... 19 2 8 0.38 3 0 0 0 3 0 0 0 0
........................................................................................................................................................................................................................................CGATTTCAACTCGATAGT............................................................................................................... 18 2 12 0.33 4 0 0 0 4 0 0 0 0
.............................................................................................................................................................................................................GCTTTTGCTTTTTGGCGGAA........................................................................................................................................ 20 2 3 0.33 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................GGGGCGAGGGTCGGCC.................................................................................................................................................................................. 16 1 4 0.25 1 0 0 0 0 0 1 0 0
...............................................................................................................AGCGGACTCTCTAAGCTTGA...................................................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................AGTGAGCCGGATGCG................................................................................................... 15 1 5 0.20 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................AGTGAGCCGGATGCGTGAAC.............................................................................................. 20 3 8 0.13 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................AGTCTTCGATATAGGGG................................................................................................................................................................................................. 17 2 10 0.10 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................TCGATTTCAACTCGATAG................................................................................................................ 18 2 10 0.10 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................ATAGAAGAGGCCACTTTC.................................................. 18 3 20 0.10 2 0 0 2 0 0 0 0 0
.............................................................................................................................................ACTACTGAATAGACTAC........................................................................................................................................................................................................... 17 2 12 0.08 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTTTAGGCGGATACAGGCT................................................................................................................................. 19 3 12 0.08 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................ATCGATTTCAACTCGATAGT............................................................................................................... 20 3 14 0.07 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................CGATATAGGGGTGGAGCAG......................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 1 0 0 0 0
................................................................................................................GCGGACTCTCTATGCTTG....................................................................................................................................................................................................................................... 18 3 16 0.06 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TGGATTTCAACTCGATAGT............................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................GCCGGAAGGAAGCTCG............................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0
..................................GGAAGGCGCTGGTTTC....................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTAGCCGGAAGCAAGTGC................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1 0
..........................................CTGGTTGCCATTGTTACAG............................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1
........................................................................................................................TCTGGACTTGAACCCTGGA.............................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0
...AAAAAGATTCTCACTGGGT................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:9613640-9614000 + dsi_19122 TGTTTTA------TTTA-----------------------------AGAGTGAACCA-CC--TTAGAAAATGTCTGCCGCGACCAAAGGTAA-C-----------------------------------------------------------T---AT-GT-------G----------A-------ATCCTTTAGGATATG------------CCTA-------------TGCTGTT----------------------------------GGT-A-GTCTA-GATAA----GAGATCATCTCGCTTGAG---------AGATCTGAACTTTGGACTTGTTGGTGTCT----TATCT------GATGCT-ATATC----------CCC---------CC--CG---------------------------------CGCCCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCCTTCGTTCG----AGCTAAATTTGTGCTATCA------CT------------C--TGCCT--ACGCACATTATA----------TATGTCGTACAT--ATGT-----TCATATGTATCTTCTCCCTTGT-AAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTTGGAACCTTCGGTGGA
droSec2 scaffold_3:5362867-5363225 + TGTTTTA------TTTA-----------------------------AGAGTGAACCA-CC--TTAGAAAATGTCTGCCGCAACCAAAGGTAA-C-----------------------------------------------------------T---AT-GT-------G----------A-------ATCCTTTAGGATATG------------CCTA-------------TGCTTTT----------------------------------GGA-A-GTCTA-GATAA----GAGATCATCTCGAT-GAG---------AGATCTGAACTTTGGACTCGTTGGTGTCT----TATCT------GATGCT-ATATC-----------CC---------CC--CG---------------------------------CGCCCAGCCGATTGCACTTTGGACCTGTTGAATG----------GAAAAC--A------AAAATCCGCCTTCGTTCG----AGCTAAATTTGTCCTATCA------CT------------C--TGCCT--GCGCACATTATA----------TAAGTTGTACAT--ATGT-----TCATATGTATCTTCTCCATTGT-AAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGA
dm3 chr2L:9915316-9915674 + TGTTTTA------TTTA-----------------------------AGAGTGAACCCACC--TTAGAAAATGTCTGCCGCAACCAAAGGTAA-T-----------------------------------------------------------T---AT-GT-------G----------A-------ATCCTTTAGGATATG------------CCTA-------------TGCTGTT----------------------------------GGA-A-GTCTA-GATAA----GAGATGATCTCGCTAGAG---------AGATCTGAACTTTGGACTCGTTGGTGTCT----TATCT------GATGCT-A--TC--CCC----CCCC---------CC--CG---------------------------------CGTCCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCCTTCGTTCG----AGCTAAATTTGTGCTATCA------C--------------------T--ACGCACATTATA----------TATGTTATACAT--ATGT-----TCGTATGTTTCTTCTCCTTTGTAAAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGA
droEre2 scaffold_4929:10531320-10531680 + TGTTTGA------TTTA-----------------------------AGAGTGTAGCA--C--TTAGACAATGTCTGCCGCAACCAAAGGTAA-C-----------------------------------------------------------T---AT----------G----------A-------ATCCTTTAGGATATC------------AGTA-------------TACC-CT----------------------------------AGA-A-GTCTA-CATAA----GTGGTGATCTCGCCAAAG---------AGATCTGAACTTTGGACTCGTTGATGTCT----TATCT------GATGCT-ATTCC----------CCC---------CC--GG---------------------------------CGACCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCTTTCGTTAG----TGCTGAATTTGTTCTATCA------CG------------C--TGCCT--ACGCACATTATA----------TATGTTATACAT--GAGT-ATGTATGTATGTATCTTCTGCTTTAT-AAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGA
droYak3 2L:12606560-12606920 + TGTTTGA------TTTA-----------------------------AGAGTGAAGCA--C--TTACAAAATGTCTGCCGCAACCAAAGGTAA-C-----------------------------------------------------------T---AT-GT-------G----------C-------ATCCTTTAGGATATC------------CCTA-------------TGCT-TT----------------------------------AGC-A-GTCCA-GATAA----GAGGTGATCTCGCCTAAG---------AGATCTGTACTTTGGACCCGTTGGTGTCT----TATCT------GATGCT-A--TC----------CCC---------CCCGCG---------------------------------CGTCCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAACCCGAGTTCGTTAG----TGCTAAATTTGTGCTATCA------CT------------C--TGCCT--ACGCACATTATA--------TATATGTTCTACAT--ATGT-----TCGTATGTGTCTTCCCCTTTAT-AAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTCGGAACCTTTGGTGGA
droEug1 scf7180000409554:4997680-4998038 - TATTTTA------ATTA-----------------------------AGAGTGAAAA---A--TTACAGAATGTCTGCAGCAACTAAAGGTAA-T-----------------------------------------------------------T---TT-AG-------G----------A-------ATCCTTTTCGGTAAA-----------AAAAA-------------TATT-TC----------------------------------AAC-A-GTTTA-GGTGC----GAGATGATCTCGTTTATG---------GGGTATGAACTTTGGACTTGTTGATGTCT----TATCT------GATGCT-A--TC----------CCC---------CC--CG---------------------------------CACTCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCTTTCGTTTA---TTGCTAAATTTGTGCTATCA------CT------------CTTTGCTT--TCGCACATTATA----------TATGTCCTACAACAATGT-----TCATATGTCTG---TCGCCTAA-AAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTTGGAACTTTCGGTGGG
droBia1 scf7180000301468:14844-15191 + TATTTTA------ATTA------------AGTGT-------T--------TAAAAAA--A--TCGCAAAATGTCTGCAGCAACTAAAGGTGAGC-----------------------------------------------------------T---TT-GT-------A----------A-------ATCCTTCCGGATAAC------------CCAG-------------TATT-CC----------------------------------TGC-C-GACTC-GCTGC----GAGATGATCTTCGCAAAG---------AGATCTGAACTTTGGACTTGTTGATGTAC----TATCT------GATGCT-A--TC-----------CC---------CC--CG---------------------------------CACTCAGCCGGTTGCACTTTGGACCTGTTGAGTC----------GAAAAC--A------AAAATCCGCTTTCGTTT------------TTCGTGCTATCACTATCACT------------CTTTGCCT--ACGCATAATATA----------TGTGTTCTACAT--ATGT-------------ATC---TCCTATAT-AAGGTATCTATATTGTGGCTGCCAAGCGAACGGCCTTTGGAACCTTCGGTGGA
droTak1 scf7180000415667:603036-603399 - TATTTTT------ACTA-----------------------------AGAGTGAAAAA--A--TCACAAAATGTCTGCAGCAACTAAAGGTAA-T-----------------------------------------------------------T---AT-GT-------G----------C-------ATTCTTCTGGGTAAC------------CCAA-------------TATT-CA----------------------------------ACC-C-GCTTA-GCTAC----GAGATGATCTTGCTAAAG---------GGATCTGAACTTTGGACTTGTTGATGTCT----TATCT------GATGCT-A--TC----------CCCTCC----CCCC--CG---------------------------------CACTCAGCCGGTTGTACTTTGGACCTGTTGAATG----------GAAAAC--A------AAAATCCGCTTTCGTTTA---TTGCTAATTTTGTGCTATCA------CT------------CTTTGCCT--ACGCACAATATA----------TATGTTCTACAT--ATGT-----TTGTATGTCTATT-CTCTATAT-AAGGTATCTATATTGTGGCCGCCAAGCGAACGGCCTTTGGAACCTTCGGTGGA
droEle1 scf7180000491186:2961879-2962245 + CATTTTT------ATTA-----------------------------AGAGTGAAATA--A--TTACAAAATGTCTGCAGCAACTAAAGGTAA-T-----------------------------------------------------------T---TA-GT-------G----------C-------ATCCATCTGGATATG------------TTAA-------------TACT-TG----------------------------------GCG-C-GGCTT-AATGC----TAAATGATCTTATA-CGG---------CCGTCTGAACTTTGGACTTGTTGGTGTCT----TATCT------GATGCT-CAATC----------CCCCCA----CCCC--CG---------------------------------CACTCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCTTTCGTTTT---TTACTAAATTCGTGCTATCA------CT------------CTTTGCCT--ACGCACATTATA------CATATATGTTCTACAT--CTGT-----CCGCATATCTG---TCCCATAA-AAGGTATCTATATTGTGGCTGCCAAGCGCACGGCCTTTGGAACCTTCGGTGGA
droRho1 scf7180000779234:280801-281156 - TATTTTA------A-TA-----------------------------AAAGTGAAAAA--A--TCACAAAATGTCTGCAGCAACTAAAGGTAA-A-----------------------------------------------------------T---TT-GT-------G----------C-------ACCCATCTGGATATG------------ACAA-------------TACT-CA----------------------------------ACC-C-TTCTA-GGTGC----GAAATGATCTTGGTTA-G---------CAGTCTGAACTTTGGACCTGTTGATGTCT----TATCT------GATGCT-A--CC-----------CC---------CC--CG---------------------------------CACTGAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCTTTCGTTTA---TTGCTAAATTTGTGCTATCA------CT------------CTTTGCCT--ACGCACATTATA--------TGTATGTTCTACAT--CTGT-----ACGATTGTCTG---TCCTATAT-AAGGTATCTATATTGTGGCTGCCAAGCGCACGGCCTTTGGAACCTTCGGTGGA
droFic1 scf7180000454144:331570-331944 + TATAATA------ATTA-----------------------------GGAGTGAAAAT--A--TTACAAAATGTCTGCAGCAACTAAAGGTAA-T-----------------------------------------------------------T---TT-GT-------G----------C-------TCCGATTTGTATA-------------------------------------------GATACATATATAGA---TCGATATAAT--GCC-C-GGTTA-AGTGC----GAGATGATCTTGTCATGG---------GGGTCTGTACTTTGGACTTGTTGATGTCT----TATCT------GATGCT-A--TC----------CCC---------TC--CG---------------------------------GACTCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCTTTCGTTTA---TTGCTGAATTTGTGCTATCA------TT------------CTTTGCCT--ACGCACATTATATATGTACATATATGTTCTACAT--ATGT-----TTGTAT----G---TTCTATAT-AAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTTGGAACCTTTGGTGGA
droKik1 scf7180000302677:212020-212397 - ATTTT-A------TTT--------TT---------ACCATAAGTAAGAAGTGAATAA-GT--CCGCAAAATGTCTGCTGCTACAAAAGGTAT-A-----------------------------------------------------------T---AATCG------TG----------A-CTCCCCGTCCTTCTGGGTATT------------AAAG-----------GATG---CT----------------------------------TGC-G-GCTGA-GATGC----AAAATGATCGTATCTAGT---------GGGTCTGAACTTTGGACTTGTTGATGTCT----TATCT------GATGCT-A--TC------------C---------CC--CG---------------------------------CGCTCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AGAGTCCGCCTTAGTTAA---TTGCT--ATTTTAGCTATCA------CT------------CT-TGTCT--ACGCACATTAGAC----ACATGTATGTTCTATAT--TTAT-----GTATATTTGTG---TTCTATAT-AAGGTATCTATATTGTGGCTGCCAAGCGCACGGCCTTTGGCACTTTCGGTGGC
droAna3 scaffold_12916:13754855-13755194 + dan_702 TATTTTA------ATT----------------TTCACTTTA-----AGAGTAAAATT--TTAAAACATAATGTCTGCGGCAACTAAAGGTAA-T-----------------------------------------------------------T---TT-GT-------T----------A-------GTTCTTCCAATCATA-----CAAGGA------------------GG--------------------------------------CTGTACT--AGCGAGAGA----TAGATGATCCACTTTCCT---------GGGTTTGAACTTTGGACTTG---GTCTTT----AATCT------GATGCC-TCGTC---------GCCC---------CC--CG---------------------------------CACATAGCCGGGTGCACTTTGGACCTGTTGA-TC----------AAAAAC--AA----AAAAAGCTGCTTTCGTTT--------------TTAGTTATCA------TT------------CCCT-CCT--ACACACGTAATA----------TATGCTCTACAT--------------------------TCTATTG-AAGGTATCTATATTGTGGCTGCCAAGCGCACGGCCTTTGGAACTTTCGGTGGC
droBip1 scf7180000396535:715596-715942 + TTTTTTA------CTTA-----------------------A-----AGAGTAAAGTT--TTAAAACATAATGTCTGCAGCAACTAAAGGTAA-T-----------------------------------------------------------T---TT-AA-------T--------AGC-------ATT---------AAACCTAACGTGGA------------------AG--------------------------------------CTGTAC-TATTA-AGAGA----TAGATGATCTACTTTCCT---------G--GTTGAACTTTGGACTGG---GTCTTT----AATCT------GATGCT-T--CC---TC----GCCC---------CC--CG---------------------------------CATTTAGCCGGGTGCACTTTGGACCTGTTGA-TC----------ACAAACCAAA----AAAAAACTGCTTTCGTTT--------------TTAGTTATCA------TT------------CTTT-TCT--ACACACGTTATA----------TATGCTCTACAT--TAGT-----GTGCCTGGTTT---ATCTATTA-AAGGTATCTATATTGTGGCTGCCAAGCGAACGGCCTTTGGAACCTTTGGTGGC
dp5 4_group3:255215-255563 - dps_1471 CATTTGATAAAGAATTA-----------------------------AAAGTGAAATC--C--ACACAAGATGTCTGCAGCAACAAAAGGTAT-A-----------------------------------------------------------A---ATTGG-------G----------CACACCCC---CA--TC-----------GGAGGACAGTGGGTTCCTGGGAGACG-------------------------------------GATGTGCG--TGAGAGGGACTGGT------------AG--AGGCTTTGCTGAGAGTGAACTTTGGACTTGTTTCAGCCT----TATCT------GATGCT-A--TC------------C---------CC--CG---------------------------------CACAGAGCCGGTTGCACTTTGGACCTGTTGAATG----------AAAAAC--A------ACGTTCTGATTTAGTTCC------CACAATTTGAATAATCA------TT------------T--TGCTT--ACACGCATACTATA--------ATAATTGTAC----------------------------------G-TAGGTATTTATATCGTGGCTGCCAAGCGCACGGCCTTTGGTACCTTCGGAGGC
droPer2 scaffold_1:1729942-1730290 - CATTTGATAAAGAATTA-----------------------------AAAGTGAAATC--C--ATACAAGATGTCTGCAGCAACAAAAGGTAT-A-----------------------------------------------------------T---ATTGG-------G----------CACACCCC---CA--TC-----------GGAGGATAGTGGGTTCCTGGGAGACG-------------------------------------GTTGTGCG--TGAGAGGGACTGGT------------AG--AGGCTTTGCTGACAGTGAACTTTGGACTTGTTTCGGCCT----TATCT------GATGCT-A--TC------------C---------CC--CG---------------------------------CACAGAGCCGGTTGCACTTTGGACCTGTTGAATG----------AAAAAC--A------ACATTCTGATTTAGTTCC------CACAATTTGAATAATCA------TT------------T--TGCTT--ACACGCATACTATA--------ATAATTGTAC----------------------------------G-TAGGTATTTATATCGTGGCTGCCAAGCGCACGGCCTTTGGTACCTTCGGAGGC
droWil2 scf2_1100000004577:2522471-2522847 + dwi_1583 TATATTATT----AATA-----------------------------AAAGTGAAATT--A-AAAGAAAAATGTCTGCTGTAACAAAAGGTAT-T-------------------------------------------------CTAAGAAATAA---CT-GT-------G----------A-TTTTTTTTAAAAAATGGGGTT------------AAAT-----------GGCG---TC----------------------------------AAG-G-GCGG--AACGG----AAA-ACATTTTTTTTTGTGGTTTTCACGATAATGAACTTTGGACTTGTTGATGTCT----TATCTGCATCTGATGCC-G--CA--CTTTC---GCC---------CC--CA---CATAGA-----------------GGCACGACTATGAGCCGGTTAGACTTTGGACCTGTTGAATGAAACAGAGAGGAAAAA--A------AAAACAAGA--------------GCAAAAC----------A------TT------------T--TG--------TGA------------------------ATAAT-TTATT----GAAATTGAC-CTTTCAAT-TTA-TAGGTATTTACATTGTGGCTGCTAAACGTACGGCTTTTGGTACATTCGGCGGC
droVir3 scaffold_12963:14552847-14553238 + dvi_11883 TATCCGTTT---------------ACTCGATTGT-------CGCAACAAGTGCAATT--T--GTGCAAAATGTCCGCGGTAACAAAAGGTAA-C-----------------------------------------------------------ATGAATTGCATATTGTTGTCTTGTT--T-------GTT--------------------------TT-------------TTCT-TCGTGCGGATGGGCATCGAGAGTTT-------------------TGA-TATGC---------------------T---------AAATGTGAACTTTGGACCTGTTGCTGTGT----TATCT------GATGCCCGGCGGCCCCTTGGCCCGCCCC--TCGCCCAGCACTAACTGGGCACCGGCAAGGG-------------GAGCGAGCGTCCGCACTTTGGACCCGTTGAGCA----------AATAGA--C------AAGATTTGCTTTAGTTAACA-TTTCCCAATTGGA-----------------------------------------ATAATCTT----------CATATCTTACAT--ATTT-----A--AT----TG---CTGTCTTC-TAGGCATTTATATTGTGGCTGCCAAGCGCACGGCCTTTGGAACCTTCGGCGGC
droMoj3 scaffold_6500:17471901-17472256 + ------------------------------------------------------------------AAAATGTCTGCAGTTACAAAAGGTAC-C-------------------------------------------------TGACTATAT-ATGAATTGC-------A----------TATATTTC---T--------------------------T-------------TGTT--T---------GCCAGC-------------------GAA-A-G----------------------------------TTTTGATGAAAGTGAACTTTGGACTTGTTGCTGCGTTCGTTATCT------TCTGCC-GGCTG----------CCCCCAACTCCCCC--TTTAACATAGACAAA------T-----GG-----------GAACGCCTGCACTTTGGACCTGTTGAGGG----------GCAAAT--AAAAAACAAGATTTGCTTTCGTTAACCATT-CCTAATTTGAATAATCT------TTATATCAGACAGGC--TGTATAAACACACACTA------------------ATGCAT--GTGT-----ATATATTTATT---TGCTCACG-CAGGCATCTATATTGTCGCTGCCAAGCGCACGGCCTTTGGCACCTTTGGCGGT
droGri2 scaffold_2736:386-714 - TATATAT---TGTTTTCACCGTACACTCGATTC------------------CCAAAT--T--GTGCAAAATGTCTGCAGCTACAAAAGGTAG-TAAAAAGTTGTTCTTGCGTCAACAATTTGTTGCATGTGATGTTAACAACCT---------------------------------------------------------------------------------------------------------------------------------------------GA--------------------T--AT---------AAAATTGTACTTTGGACTCGCTGCTGTCC----TATCT------GCACCC-T--TC------------C--A----CCTC--CGCTACATAACCAAAGTCATGGGAGGGGG-----------GTTTCTCTGTACTTTGGACTTGTTGATT-----------GAATTT--T------AATATTTGC-------------------------GTTATGA------TT-----------------------TGTATATTATT----------TTT----------------------------------ATCTAATT-AAGGTATATATATTGTTGCCGCTAAGCGAACGGCCTTTGGAACTTTCGGTGGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGTTTTA------TTTA-----------------------------AGAGTGAACCA-CC--TTAGAAAATGTCTGCCGCGACCAAAGGTAA-C-----------------------------------------------------------T---AT-GT-------G----------A-------ATCCTTTAGGATATG------------CCTA-------------TGCTGTT----------------------------------GGT-A-GTCTA-GATAA----GAGATCATCTCGCTTGAG---------AGATCTGAACTTTGGACTTGTTGGTGTCT----TATCT------GATGCT-ATATC----------CCC---------CC--CG---------------------------------CGCCCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCCTTCGTTCG----AGCTAAATTTGTGCTATCA------CT------------C--TGCCT--ACGCACATTATA----------TATGTCGTACAT--ATGT-----TCATATGTATCTTCTCCCTTGT-AAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTTGGAACCTTCGGTGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................TGAACCA-CC--TTAGAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGCCTTTGGAACCTTCGGTGGA2512.00200000000200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACGGCCTTTGGAACCTT.......2012.00202000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGCCAAGCGTACGGCC..................2111.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTCGTACAT--ATGT-----TCATATGTATC.................................................................2711.00100000010000000000
.....TA------TTTA-----------------------------AGAGTGAACCA-CC--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCTGTTGAATC----------GAAAAC--A------AAAA............................................................................................................................................................................................2611.00100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTTGGACCTGTTGAATC----------G..............................................................................................................................................................................................................2111.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACCTGTTGAATC----------GAAAA..........................................................................................................................................................................................................2111.00110000000000000000
................................................................................................................................................................................................................................................................................................................CGCTTGAG---------AGATCTGAACT.....................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCTATCA------CT------------C--TGCCC--.........................................................................................................................2111.00110000000000000000
......................................................................................................................................................................................................................................................................................................GAGATCATCTCGCTTGAG---------AGA.............................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
droSec2
TGTTTTA------TTTA-----------------------------AGAGTGAACCA-CC--TTAGAAAATGTCTGCCGCAACCAAAGGTAA-C-----------------------------------------------------------T---AT-GT-------G----------A-------ATCCTTTAGGATATG------------CCTA-------------TGCTTTT----------------------------------GGA-A-GTCTA-GATAA----GAGATCATCTCGAT-GAG---------AGATCTGAACTTTGGACTCGTTGGTGTCT----TATCT------GATGCT-ATATC-----------CC---------CC--CG---------------------------------CGCCCAGCCGATTGCACTTTGGACCTGTTGAATG----------GAAAAC--A------AAAATCCGCCTTCGTTCG----AGCTAAATTTGTCCTATCA------CT------------C--TGCCT--GCGCACATTATA----------TAAGTTGTACAT--ATGT-----TCATATGTATCTTCTCCATTGT-AAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGCTGCCAAGCGTAC......................2013.0030120
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGCTGCCAAGCGTACGGC...................2513.0030030
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGCTGCCAAGCGTAC......................2212.0020020
.GTTTTA------TTTA-----------------------------AGAGTGAACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...TTTA------TTTA-----------------------------AGAGTGAACCA-CC--T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.............................................................................CGCAACCAAAGGTAA-C-----------------------------------------------------------T---AT-GT-------G----------A-------ATCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTATATTGTGGCTGCCAAG...........................2211.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCGGAACCTTCGGTGG.2011.0010010
TGTTTTA------TTTA-----------------------------AGAGTGAACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTGCCAAGCGTACGG....................2011.0011000
....TTA------TTTA-----------------------------AGAGTGAACCA-CC--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...TTTA------TTTA-----------------------------AGAGTGAACCA-C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTACGGCCTTCGGAAC..........1911.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGCCTTCGGAACCTTC......2011.0010010
......A------TTTA-----------------------------AGAGTGAACCA-CC--T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....TA------TTTA-----------------------------AGAGTGAACCA-CC--T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAAGCGTACGGCCTTCGGAAC..........2411.0010100
......A------TTTA-----------------------------AGAGTGAACCA-CC--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTGGCTGCCAAGCGTAC......................2411.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGCTGCCAAGCGTACGGC...................2311.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACCTGTTGAATG----------GAAAA..........................................................................................................................................................................................................2111.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAAGCGTACGGCCTTCG..............2111.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTACGGCCTTCGGAACCTTCGGT...2511.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGCTGCCAAGCGTACG.....................2311.0010010
TGTTTTA------TTTA-----------------------------AGAGTGAACCA-CC--T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGCTGCCAAGCGTACGGCC..................2411.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCCAAGCGTACGGCCTTCGGAACC.........2811.0010010
..........................................................................................................................................................................................................................................................................................................................................CTTTGGACTCGTTGGTGT.....................................................................................................................................................................................................................................................................................................................................................1811.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTTTGGACCTGTTGAATG----------GA.............................................................................................................................................................................................................2411.0010010
....................................................AACCA-CC--TTAGAAAATGTCTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
dm3
TGTTTTA------TTTA-----------------------------AGAGTGAACCCACC--TTAGAAAATGTCTGCCGCAACCAAAGGTAA-T-----------------------------------------------------------T---AT-GT-------G----------A-------ATCCTTTAGGATATG------------CCTA-------------TGCTGTT----------------------------------GGA-A-GTCTA-GATAA----GAGATGATCTCGCTAGAG---------AGATCTGAACTTTGGACTCGTTGGTGTCT----TATCT------GATGCT-A--TC--CCC----CCCC---------CC--CG---------------------------------CGTCCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCCTTCGTTCG----AGCTAAATTTGTGCTATCA------C--------------------T--ACGCACATTATA----------TATGTTATACAT--ATGT-----TCGTATGTTTCTTCTCCTTTGTAAAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGCCTTCGGAACCTTCGGTGGA2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................CCCACC--TTAGAAAATGTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000002000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGCTGCCAAGCGTACGG....................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTGCCAAGCGTACGGC...................2114.0040000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................AACTTTGGACTCGTTGGTGTC....................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............TTA-----------------------------AGAGTGAACCCACC--TTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................GTT----------------------------------GGA-A-GTCTA-GATAA----GAGA.......................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGCTGCCAAGCGTAC......................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................AGGATATG------------CCTA-------------TGCTGTT----------------------------------GG..............................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTGCCAAGCGTACGG....................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............TA-----------------------------AGAGTGAACCCACC--TTAGAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATATTGTGGCTGCCAAG...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTGGCTGCCAAGCGTACGG....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTCG----AGCTAAATTTGTGCTATCA------.................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTGCCAAGCGTACGGCCT.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................CCACC--TTAGAAAATGTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................CCACC--TTAGAAAATGTCTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................A-GTCTA-GATAA----GAGATGATCT.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTGTGGCTGCCAAGCGT........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGTATCTATATTGTGGCTGCCAAGCGTACG.....................3311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTCG----AGCTAAATTTGTGC............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
droEre2
TGTTTGA------TTTA-----------------------------AGAGTGTAGCA--C--TTAGACAATGTCTGCCGCAACCAAAGGTAA-C-----------------------------------------------------------T---AT----------G----------A-------ATCCTTTAGGATATC------------AGTA-------------TACC-CT----------------------------------AGA-A-GTCTA-CATAA----GTGGTGATCTCGCCAAAG---------AGATCTGAACTTTGGACTCGTTGATGTCT----TATCT------GATGCT-ATTCC----------CCC---------CC--GG---------------------------------CGACCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCTTTCGTTAG----TGCTGAATTTGTTCTATCA------CG------------C--TGCCT--ACGCACATTATA----------TATGTTATACAT--GAGT-ATGTATGTATGTATCTTCTGCTTTAT-AAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATATTGTGGCTGCCAAGC..........................2211.0010100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTATATTGTGGCTGCCAAGC..........................2311.0010100000
.................................................................................................................................................................................................................................................................................................................................................CTCGTTGATGTCT----TATCT------GATG................................................................................................................................................................................................................................................................................................................................2211.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGCTGCCAAGCGTACGGC...................2511.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATATTGTGGCTGCCAAGCGTACG.....................2711.0010000100
........................................................A--C--TTAGACAATGTCTGCCGCAACCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAAGCGTACGGCCTTCGGAACC.........2711.0010100000
.................................................GTGTAGCA--C--TTAGACAATGTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGCTGCCAAGCGTAC......................2011.0010000010
.....................................................AGCA--C--TTAGACAATGTCTGCCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
droYak3
TGTTTGA------TTTA-----------------------------AGAGTGAAGCA--C--TTACAAAATGTCTGCCGCAACCAAAGGTAA-C-----------------------------------------------------------T---AT-GT-------G----------C-------ATCCTTTAGGATATC------------CCTA-------------TGCT-TT----------------------------------AGC-A-GTCCA-GATAA----GAGGTGATCTCGCCTAAG---------AGATCTGTACTTTGGACCCGTTGGTGTCT----TATCT------GATGCT-A--TC----------CCC---------CCCGCG---------------------------------CGTCCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAACCCGAGTTCGTTAG----TGCTAAATTTGTGCTATCA------CT------------C--TGCCT--ACGCACATTATA--------TATATGTTCTACAT--ATGT-----TCGTATGTGTCTTCCCCTTTAT-AAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTCGGAACCTTTGGTGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGGTTGCACTTTGGAC...................................................................................................................................................................................................................................1912.00220000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCA------CT------------C--TGCCT--ACGCAC...................................................................................................................2011.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGCTGCCAAGCGTAC......................2011.00100000010000
.....................................................................ATGTCTGCCGCAACCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
......A------TTTA-----------------------------AGAGTGAAGCA--C--TTACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...................................................................................................................................................................................................................................................................................................................CTAAG---------AGATCTGTACTTTGGA................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.GTTTGA------TTTA-----------------------------AGAGTGAAGCA--C--T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCACTTTGGACCTGTTGAATC----------...............................................................................................................................................................................................................2511.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGTCTTCCCCTTTAT-AAG..................................................2211.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGCCTTCGGAACCTTTGGT...2311.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGTCTTCCCCTTTAT-AA...................................................2211.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATATTGTGGCTGCCAAGCGTAC......................2611.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTGGCTGCCAAGCGTACGGC...................2711.00100000010000
droEug1
TATTTTA------ATTA-----------------------------AGAGTGAAAA---A--TTACAGAATGTCTGCAGCAACTAAAGGTAA-T-----------------------------------------------------------T---TT-AG-------G----------A-------ATCCTTTTCGGTAAA-----------AAAAA-------------TATT-TC----------------------------------AAC-A-GTTTA-GGTGC----GAGATGATCTCGTTTATG---------GGGTATGAACTTTGGACTTGTTGATGTCT----TATCT------GATGCT-A--TC----------CCC---------CC--CG---------------------------------CACTCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCTTTCGTTTA---TTGCTAAATTTGTGCTATCA------CT------------CTTTGCTT--TCGCACATTATA----------TATGTCCTACAACAATGT-----TCATATGTCTG---TCGCCTAA-AAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTTGGAACTTTCGGTGGGSizeHit CountTotal NormTotal
No Reads
droBia1
TATTTTA------ATTA------------AGTGT-------T--------TAAAAAA--A--TCGCAAAATGTCTGCAGCAACTAAAGGTGAGC-----------------------------------------------------------T---TT-GT-------A----------A-------ATCCTTCCGGATAAC------------CCAG-------------TATT-CC----------------------------------TGC-C-GACTC-GCTGC----GAGATGATCTTCGCAAAG---------AGATCTGAACTTTGGACTTGTTGATGTAC----TATCT------GATGCT-A--TC-----------CC---------CC--CG---------------------------------CACTCAGCCGGTTGCACTTTGGACCTGTTGAGTC----------GAAAAC--A------AAAATCCGCTTTCGTTT------------TTCGTGCTATCACTATCACT------------CTTTGCCT--ACGCATAATATA----------TGTGTTCTACAT--ATGT-------------ATC---TCCTATAT-AAGGTATCTATATTGTGGCTGCCAAGCGAACGGCCTTTGGAACCTTCGGTGGASizeHit CountTotal NormTotal
No Reads
droTak1
TATTTTT------ACTA-----------------------------AGAGTGAAAAA--A--TCACAAAATGTCTGCAGCAACTAAAGGTAA-T-----------------------------------------------------------T---AT-GT-------G----------C-------ATTCTTCTGGGTAAC------------CCAA-------------TATT-CA----------------------------------ACC-C-GCTTA-GCTAC----GAGATGATCTTGCTAAAG---------GGATCTGAACTTTGGACTTGTTGATGTCT----TATCT------GATGCT-A--TC----------CCCTCC----CCCC--CG---------------------------------CACTCAGCCGGTTGTACTTTGGACCTGTTGAATG----------GAAAAC--A------AAAATCCGCTTTCGTTTA---TTGCTAATTTTGTGCTATCA------CT------------CTTTGCCT--ACGCACAATATA----------TATGTTCTACAT--ATGT-----TTGTATGTCTATT-CTCTATAT-AAGGTATCTATATTGTGGCCGCCAAGCGAACGGCCTTTGGAACCTTCGGTGGASizeHit CountTotal NormTotal
No Reads
droEle1
CATTTTT------ATTA-----------------------------AGAGTGAAATA--A--TTACAAAATGTCTGCAGCAACTAAAGGTAA-T-----------------------------------------------------------T---TA-GT-------G----------C-------ATCCATCTGGATATG------------TTAA-------------TACT-TG----------------------------------GCG-C-GGCTT-AATGC----TAAATGATCTTATA-CGG---------CCGTCTGAACTTTGGACTTGTTGGTGTCT----TATCT------GATGCT-CAATC----------CCCCCA----CCCC--CG---------------------------------CACTCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCTTTCGTTTT---TTACTAAATTCGTGCTATCA------CT------------CTTTGCCT--ACGCACATTATA------CATATATGTTCTACAT--CTGT-----CCGCATATCTG---TCCCATAA-AAGGTATCTATATTGTGGCTGCCAAGCGCACGGCCTTTGGAACCTTCGGTGGASizeHit CountTotal NormTotal
No Reads
droRho1
TATTTTA------A-TA-----------------------------AAAGTGAAAAA--A--TCACAAAATGTCTGCAGCAACTAAAGGTAA-A-----------------------------------------------------------T---TT-GT-------G----------C-------ACCCATCTGGATATG------------ACAA-------------TACT-CA----------------------------------ACC-C-TTCTA-GGTGC----GAAATGATCTTGGTTA-G---------CAGTCTGAACTTTGGACCTGTTGATGTCT----TATCT------GATGCT-A--CC-----------CC---------CC--CG---------------------------------CACTGAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCTTTCGTTTA---TTGCTAAATTTGTGCTATCA------CT------------CTTTGCCT--ACGCACATTATA--------TGTATGTTCTACAT--CTGT-----ACGATTGTCTG---TCCTATAT-AAGGTATCTATATTGTGGCTGCCAAGCGCACGGCCTTTGGAACCTTCGGTGGASizeHit CountTotal NormTotal
No Reads
droFic1
TATAATA------ATTA-----------------------------GGAGTGAAAAT--A--TTACAAAATGTCTGCAGCAACTAAAGGTAA-T-----------------------------------------------------------T---TT-GT-------G----------C-------TCCGATTTGTATA-------------------------------------------GATACATATATAGA---TCGATATAAT--GCC-C-GGTTA-AGTGC----GAGATGATCTTGTCATGG---------GGGTCTGTACTTTGGACTTGTTGATGTCT----TATCT------GATGCT-A--TC----------CCC---------TC--CG---------------------------------GACTCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AAAATCCGCTTTCGTTTA---TTGCTGAATTTGTGCTATCA------TT------------CTTTGCCT--ACGCACATTATATATGTACATATATGTTCTACAT--ATGT-----TTGTAT----G---TTCTATAT-AAGGTATCTATATTGTGGCTGCCAAGCGTACGGCCTTTGGAACCTTTGGTGGASizeHit CountTotal NormTotal
No Reads
droKik1
ATTTT-A------TTT--------TT---------ACCATAAGTAAGAAGTGAATAA-GT--CCGCAAAATGTCTGCTGCTACAAAAGGTAT-A-----------------------------------------------------------T---AATCG------TG----------A-CTCCCCGTCCTTCTGGGTATT------------AAAG-----------GATG---CT----------------------------------TGC-G-GCTGA-GATGC----AAAATGATCGTATCTAGT---------GGGTCTGAACTTTGGACTTGTTGATGTCT----TATCT------GATGCT-A--TC------------C---------CC--CG---------------------------------CGCTCAGCCGGTTGCACTTTGGACCTGTTGAATC----------GAAAAC--A------AGAGTCCGCCTTAGTTAA---TTGCT--ATTTTAGCTATCA------CT------------CT-TGTCT--ACGCACATTAGAC----ACATGTATGTTCTATAT--TTAT-----GTATATTTGTG---TTCTATAT-AAGGTATCTATATTGTGGCTGCCAAGCGCACGGCCTTTGGCACTTTCGGTGGCSizeHit CountTotal NormTotal
No Reads
droAna3
TATTTTA------ATT----------------TTCACTTTA-----AGAGTAAAATT--TTAAAACATAATGTCTGCGGCAACTAAAGGTAA-T-----------------------------------------------------------T---TT-GT-------T----------A-------GTTCTTCCAATCATA-----CAAGGA------------------GG--------------------------------------CTGTACT--AGCGAGAGA----TAGATGATCCACTTTCCT---------GGGTTTGAACTTTGGACTTG---GTCTTT----AATCT------GATGCC-TCGTC---------GCCC---------CC--CG---------------------------------CACATAGCCGGGTGCACTTTGGACCTGTTGA-TC----------AAAAAC--AA----AAAAAGCTGCTTTCGTTT--------------TTAGTTATCA------TT------------CCCT-CCT--ACACACGTAATA----------TATGCTCTACAT--------------------------TCTATTG-AAGGTATCTATATTGTGGCTGCCAAGCGCACGGCCTTTGGAACTTTCGGTGGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................GTCTTT----AATCT------GATGCC-TCGTC---------GC.............................................................................................................................................................................................................................................................................................................2411.001100000
........................................................................................................................................................................................................................................................................................................................................................GTCTTT----AATCT------GATGCC-TCGTC---------GCC............................................................................................................................................................................................................................................................................................................2511.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGGCCTTTGGAACTTTC......2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCACGGCCTTTGGAACTTTCGG....2511.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGCTGCCAAGCGCACGGC...................2211.001100000
........................................................T--TTAAAACATAATGTCTGCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..................................................................ATAATGTCTGCGGCAACTAAAGGTAT-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAAGCGCACGGCCTTTG..............2011.001100000
.....................................................AATT--TTAAAACATAATGTCTGCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGGCCTTTGGAACTTTCGGT...2311.001100000
....................................................................................................................................................................................................................................................................................ACT--AGCGAGAGA----TAGATGAT...................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAAGCGCACGGCCTTTGGA............2411.001100000
..............................................................AAACATAATGTCTGCGGCAACTAAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droBip1
TTTTTTA------CTTA-----------------------A-----AGAGTAAAGTT--TTAAAACATAATGTCTGCAGCAACTAAAGGTAA-T-----------------------------------------------------------T---TT-AA-------T--------AGC-------ATT---------AAACCTAACGTGGA------------------AG--------------------------------------CTGTAC-TATTA-AGAGA----TAGATGATCTACTTTCCT---------G--GTTGAACTTTGGACTGG---GTCTTT----AATCT------GATGCT-T--CC---TC----GCCC---------CC--CG---------------------------------CATTTAGCCGGGTGCACTTTGGACCTGTTGA-TC----------ACAAACCAAA----AAAAAACTGCTTTCGTTT--------------TTAGTTATCA------TT------------CTTT-TCT--ACACACGTTATA----------TATGCTCTACAT--TAGT-----GTGCCTGGTTT---ATCTATTA-AAGGTATCTATATTGTGGCTGCCAAGCGAACGGCCTTTGGAACCTTTGGTGGCSizeHit CountTotal NormTotal
No Reads
dp5
CATTTGATAAAGAATTA-----------------------------AAAGTGAAATC--C--ACACAAGATGTCTGCAGCAACAAAAGGTAT-A-----------------------------------------------------------A---ATTGG-------G----------CACACCCC---CA--TC-----------GGAGGACAGTGGGTTCCTGGGAGACG-------------------------------------GATGTGCG--TGAGAGGGACTGGT------------AG--AGGCTTTGCTGAGAGTGAACTTTGGACTTGTTTCAGCCT----TATCT------GATGCT-A--TC------------C---------CC--CG---------------------------------CACAGAGCCGGTTGCACTTTGGACCTGTTGAATG----------AAAAAC--A------ACGTTCTGATTTAGTTCC------CACAATTTGAATAATCA------TT------------T--TGCTT--ACACGCATACTATA--------ATAATTGTAC----------------------------------G-TAGGTATTTATATCGTGGCTGCCAAGCGCACGGCCTTTGGTACCTTCGGAGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCGTGGCTGCCAAGCGCACGGCC..................2811.0010100000000
....................................................................GATGTCTGCAGCAACAAAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
....................................................................................................................................................................................................................................................................................GCG--TGAGAGGGACTGGT------------AG--A.........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGGCCTTTGGTACCTT.......1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCGTGGCTGCCAAGCGCAC......................2411.0010100000000
.....................................................AATC--C--ACACAAGATGTCTGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................C--ACACAAGATGTCTGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
..................................................................................................................................................................................................................................................................................GTGCG--TGAGAGGGACTGGT------------AG--AGGC......................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
......................................................................................................................................................................................................................................................................................G--TGAGAGGGACTGGT------------AG--AGGC......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAAGCGCACGGCCTT................1911.0010010000000
.................................................GTGAAATC--C--ACACAAGATGTCTGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
......ATAAAGAATTA-----------------------------AAAGTGAAATC--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTTTGGTACCTTCGGA...1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATCGTGGCTGCCAAGCG.........................2011.0010100000000
....................................................................................................................................................................................................................................................................................GCG--TGAGAGGGACTGGT------------AG--AG........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
...................................................................................................................................................................................................................................................................................TGCG--TGAGAGGGACTGGT------------AG--AG........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
.................................................GTGAAATC--C--ACACAAGATGTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................CAGCCT----TATCT------GATGCT-A--TC------------C---------CC--C.............................................................................................................................................................................................................................................................................................2411.0010100000000
droPer2
CATTTGATAAAGAATTA-----------------------------AAAGTGAAATC--C--ATACAAGATGTCTGCAGCAACAAAAGGTAT-A-----------------------------------------------------------T---ATTGG-------G----------CACACCCC---CA--TC-----------GGAGGATAGTGGGTTCCTGGGAGACG-------------------------------------GTTGTGCG--TGAGAGGGACTGGT------------AG--AGGCTTTGCTGACAGTGAACTTTGGACTTGTTTCGGCCT----TATCT------GATGCT-A--TC------------C---------CC--CG---------------------------------CACAGAGCCGGTTGCACTTTGGACCTGTTGAATG----------AAAAAC--A------ACATTCTGATTTAGTTCC------CACAATTTGAATAATCA------TT------------T--TGCTT--ACACGCATACTATA--------ATAATTGTAC----------------------------------G-TAGGTATTTATATCGTGGCTGCCAAGCGCACGGCCTTTGGTACCTTCGGAGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................GTGCG--TGAGAGGGACTGG...........................................................................................................................................................................................................................................................................................................................................................................................................1813.003000003
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATATCGTGGCTGCC..............................2012.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATATCGTGGCTGCC..............................1812.002101000
..................................................................................................................................................................................................................................................................................GTGCG--TGAGAGGGACTGGT------------..............................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..................................................................................................................................................................................................................................................................................GTGCG--TGAGAGGGACTGGT------------AG--AGG.......................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTACCTTCGGAGG.1811.001100000
..........................................................................................................................................................................................................................GGGTTCCTGGGAGACG-------------------------------------GTTGTGCG--........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droWil2
TATATTATT----AATA-----------------------------AAAGTGAAATT--A-AAAGAAAAATGTCTGCTGTAACAAAAGGTAT-T-------------------------------------------------CTAAGAAATAA---CT-GT-------G----------A-TTTTTTTTAAAAAATGGGGTT------------AAAT-----------GGCG---TC----------------------------------AAG-G-GCGG--AACGG----AAA-ACATTTTTTTTTGTGGTTTTCACGATAATGAACTTTGGACTTGTTGATGTCT----TATCTGCATCTGATGCC-G--CA--CTTTC---GCC---------CC--CA---CATAGA-----------------GGCACGACTATGAGCCGGTTAGACTTTGGACCTGTTGAATGAAACAGAGAGGAAAAA--A------AAAACAAGA--------------GCAAAAC----------A------TT------------T--TG--------TGA------------------------ATAAT-TTATT----GAAATTGAC-CTTTCAAT-TTA-TAGGTATTTACATTGTGGCTGCTAAACGTACGGCTTTTGGTACATTCGGCGGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................ATT--A-AAAGAAAAATGTCTGCTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.00300300
.......................................................................GTCTGCTGTAACAAAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
....................................................................................................................................................................................................................................................................................................................................................GTTGATGTCT----TATCTGCATCT....................................................................................................................................................................................................................................................................................................................................2111.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGCTGCTAAACGTACGG....................2211.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTTTTGGTACATTCGGC...2011.00100010
...........................................................A-AAAGAAAAATGTCTGCTGTAACAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
...............................................................AGAAAAATGTCTGCTGTAACAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGCTGCTAAACGTACGGC...................2311.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-TAGGTATTTACATTGTGGCTG................................2411.00100100
..............................................................................................................................................................................................................................................................................................................................CACGATAATGAACTTTGGACTTGTTG.........................................................................................................................................................................................................................................................................................................................................................2611.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGTGGCTGCTAAACG.........................1811.00100001
...........................................................A-AAAGAAAAATGTCTGCTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTAAACGTACGGCTTTTGGT............2211.00100100
.............................................................AAAGAAAAATGTCTGCTGTAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.................................................................................................................................................................................................................................................................................................................................GATAATGAACTTTGGACTTGTTGATGT.....................................................................................................................................................................................................................................................................................................................................................2711.00100010
.....................................................AATT--A-AAAGAAAAATGTCTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..........................................................................................................................................................................................TTTTAAAAAATGGGGTT------------AAAT-----------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTACGGCTTTTGGTACATTC......2311.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------TGA------------------------ATAAT-TTATT----GAAATTGAC-CTT...............................................................2611.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTTACATTGTGGCTGCTAAAC..........................2511.00101000
.........................................................................................................................................................................................................................................................................................................................................ACTTTGGACTTGTTGATGTC....................................................................................................................................................................................................................................................................................................................................................2011.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGACTATGAGCCGGT...............................................................................................................................................................................................................................................1811.00100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTA-TAGGTATTTACATTGTGGC..................................2311.00100001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGCTTTTGGTACATTCGGCGGC2511.00100010
.....................................................AATT--A-AAAGAAAAATGTCTGCTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
droVir3
TATCCGTTT---------------ACTCGATTGT-------CGCAACAAGTGCAATT--T--GTGCAAAATGTCCGCGGTAACAAAAGGTAA-C-----------------------------------------------------------ATGAATTGCATATTGTTGTCTTGTT--T-------GTT--------------------------TT-------------TTCT-TCGTGCGGATGGGCATCGAGAGTTT-------------------TGA-TATGC---------------------T---------AAATGTGAACTTTGGACCTGTTGCTGTGT----TATCT------GATGCCCGGCGGCCCCTTGGCCCGCCCC--TCGCCCAGCACTAACTGGGCACCGGCAAGGG-------------GAGCGAGCGTCCGCACTTTGGACCCGTTGAGCA----------AATAGA--C------AAGATTTGCTTTAGTTAACA-TTTCCCAATTGGA-----------------------------------------ATAATCTT----------CATATCTTACAT--ATTT-----A--AT----TG---CTGTCTTC-TAGGCATTTATATTGTGGCTGCCAAGCGCACGGCCTTTGGAACCTTCGGCGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................ATGTCCGCGGTAACAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002001000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTGCCAAGCGCACGGC...................2112.002001100000000000000000000000000000000000000000000000000000000000
.ATCCGTTT---------------ACTCGATTGT-------CGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000000000000000000002000000000000000000000000000000000000000000
.......................................................TT--T--GTGCAAAATGTCCGCGGTAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
.................................................................CAAAATGTCCGCGGTAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----A--AT----TG---CTGTCTTC-TAGG.................................................1911.001000000000000000000000010000000000000000000000000000000000000000
...............................TGT-------CGCAACAAGTGCAATT--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TCT------GATGCCCGGCGGCCC.....................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.....................................................AATT--T--GTGCAAAATGTCCGCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGGCCTTTGGAACCTTCGGCGGC2611.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TCT-TCGTGCGGATGGGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.................................T-------CGCAACAAGTGCAATT--T--GTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGCGTCCGCACTTTGGACCCGTTGA............................................................................................................................................................................................................................2811.001000000000000000000100000000000000000000000000000000000000000000
.ATCCGTTT---------------ACTCGATTGT-------CGCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................ACTTTGGACCTGTTGCTGTGT----...............................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
...........................CGATTGT-------CGCAACAAGTGCAATT--T--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
...........................................CAACAAGTGCAATT--T--GTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................T--GTGCAAAATGTCCGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
......................................................................TGTCCGCGGTAACAAAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
......TTT---------------ACTCGATTGT-------CGCAACAAGTGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................GTT--T-------GTT--------------------------TT-------------TTCT-TCGTGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGCTGCCAAGC..........................1811.001000100000000000000000000000000000000000000000000000000000000000
.......TT---------------ACTCGATTGT-------CGCAACAAGTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
.....................................................AATT--T--GTGCAAAATGTCCGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................GTCCGCGGTAACAAAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGCTGCCAAGCGCACGGCCT.................2411.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................ATGTCCGCGGTAACAAAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCACGGCCTTTGGAACCTTCGGT...2511.001000000000000001000000000000000000000000000000000000000000000000
...........................................................T--GTGCAAAATGTCCGCGGTAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
..................................................................AAAATGTCCGCGGTAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................GTGCGGATGGGCATCGAGAGTTT-------------------TGA-TATGC---------------------..........................................................................................................................................................................................................................................................................................................................................................................................3111.001000000000000000000000000000000000000000000000000000100000000000
........................ACTCGATTGT-------CGCAACAAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGCTGCCAAGCGCAC......................2211.001001000000000000000000000000000000000000000000000000000000000000
................................................AGTGCAATT--T--GTGCAAAATGTCCGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCCAAGCGCACGGC...................1811.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
------------------------------------------------------------------AAAATGTCTGCAGTTACAAAAGGTAC-C-------------------------------------------------TGACTATAT-ATGAATTGC-------A----------TATATTTC---T--------------------------T-------------TGTT--T---------GCCAGC-------------------GAA-A-G----------------------------------TTTTGATGAAAGTGAACTTTGGACTTGTTGCTGCGTTCGTTATCT------TCTGCC-GGCTG----------CCCCCAACTCCCCC--TTTAACATAGACAAA------T-----GG-----------GAACGCCTGCACTTTGGACCTGTTGAGGG----------GCAAAT--AAAAAACAAGATTTGCTTTCGTTAACCATT-CCTAATTTGAATAATCT------TTATATCAGACAGGC--TGTATAAACACACACTA------------------ATGCAT--GTGT-----ATATATTTATT---TGCTCACG-CAGGCATCTATATTGTCGCTGCCAAGCGCACGGCCTTTGGCACCTTTGGCGGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCACGGCCTTTGGCACC.........2111.001100000
.......................................................................GTCTGCAGTTACAAAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATATTGTCGCTGCCAAGC..........................2211.001100000
................................................................................TACAAAAGGTAC-C-------------------------------------------------TGACTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCACGGCCTTTGGCACCTTTGGCGG.2711.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTATATTGTCGCTGCCAA............................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCT------TTATATCAGACAGGC--TGTAT...........................................................................................................................2511.001100000
............................................................................................................................................................................................................................................................................................................................................TTGGACTTGTTGCTGCGTTCG................................................................................................................................................................................................................................................................................................................................................2111.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTCGCTGCCAAGCGCA.......................2111.001100000
droGri2
TATATAT---TGTTTTCACCGTACACTCGATTC------------------CCAAAT--T--GTGCAAAATGTCTGCAGCTACAAAAGGTAG-TAAAAAGTTGTTCTTGCGTCAACAATTTGTTGCATGTGATGTTAACAACCT---------------------------------------------------------------------------------------------------------------------------------------------GA--------------------T--AT---------AAAATTGTACTTTGGACTCGCTGCTGTCC----TATCT------GCACCC-T--TC------------C--A----CCTC--CGCTACATAACCAAAGTCATGGGAGGGGG-----------GTTTCTCTGTACTTTGGACTTGTTGATT-----------GAATTT--T------AATATTTGC-------------------------GTTATGA------TT-----------------------TGTATATTATT----------TTT----------------------------------ATCTAATT-AAGGTATATATATTGTTGCCGCTAAGCGAACGGCCTTTGGAACTTTCGGTGGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAACGGCCTTTGGAACT.........1921.00220
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGCTAAGCGAACG.....................1820.50110
.............................ATTC------------------CCAAAT--T--GTGCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50110
............................GATTC------------------CCAAAT--T--GTGCAAAATGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50101
............................................................................................................................GCATGTGATGTTAACAACCT---------------------------------------------------------------------------------------------------------------------------------------------GA--------------------T--A..........................................................................................................................................................................................................................................................................................................................................................................................2420.50110
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCCGCTAAGCGAACG.....................2120.50110
....................................................CAAAT--T--GTGCAAAATGTCTGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50110

Generated: 05/18/2015 at 11:43 AM