dsi_1911

TGGCAAAAGGTTTAGCAAATTTAGTTAGTCTGAAGTAAGCTATTCCGAAGGTAAGGAGCTCATATTTACTATTCAAGATCTCTATACATTAAATTACTATTTATAGATACCAAAAAAATGTAATTTATTTATAGACATTTATTAGTTCAGATAGTAATGGTATGTATATATTTCTAGCCATATAAATTTTATGAGGATAAGCTCCAAACAAATTCCGTCATAATGGC *****************************************************************************************************.((...................(((.((((.((..((((((.......))))))..)).)))).)))))*****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.................................................................................................................................................TTCAGATAGTAATGGTATGTATATATT.......................................................	27	0	1	2.00	2	2	0	0	0
.................................................................................................................................................................................................................AAATTCCGTCATAATGGC	18	0	1	1.00	1	0	1	0	0
.......................................................................................................TAGATACCAAAAAAATGTAATTTATT..................................................................................................	26	0	1	1.00	1	0	1	0	0
.............................................................................................................................................TTAGTTCAGATAGTAATGGTATGTA.............................................................	25	0	1	1.00	1	1	0	0	0
............................TCTGCAGGAAGATATTCCGAAG.................................................................................................................................................................................	22	3	1	1.00	1	0	0	1	0
....................................................................................................GTATAGATACCAAAAAAA.............................................................................................................	18	1	2	0.50	1	0	1	0	0
.........................................................................................................................................................GTAATGGTATGTATA...........................................................	15	0	3	0.33	1	0	0	0	1
...........................GTCTGAAGAAAGCTA.........................................................................................................................................................................................	15	1	5	0.20	1	1	0	0	0
...........................................TCCGAAGGTACGGTGATCA.....................................................................................................................................................................	19	3	14	0.07	1	0	0	0	1
...........................................................................................................................................................................................GTTGTGAGGTTAAGCTCCA.....................	19	3	15	0.07	1	0	0	0	1
...................................................................................................TGTATAGAGACCAAAGAAA.............................................................................................................	19	3	20	0.05	1	1	0	0	0

ACCGTTTTCCAAATCGTTTAAATCAATCAGACTTCATTCGATAAGGCTTCCATTCCTCGAGTATAAATGATAAGTTCTAGAGATATGTAATTTAATGATAAATATCTATGGTTTTTTTACATTAAATAAATATCTGTAAATAATCAAGTCTATCATTACCATACATATATAAAGATCGGTATATTTAAAATACTCCTATTCGAGGTTTGTTTAAGGCAGTATTACCG *****************************************************.((...................(((.((((.((..((((((.......))))))..)).)))).)))))*****************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
........................................AGAAGGCTTCCATGCCTC.........................................................................................................................................................................	18	2	1	1.00	1	1	0	0
........................................AGAAGGCTTCCATTCC...........................................................................................................................................................................	16	1	1	1.00	1	1	0	0
........................................AGAAGGCTTCCATGCCTCC........................................................................................................................................................................	19	3	5	1.00	5	5	0	0
..........................................AAGGCTTCCATGCCTCC........................................................................................................................................................................	17	2	3	1.00	3	3	0	0
...........................................AGGCTTCCATCCCTC.........................................................................................................................................................................	15	1	1	1.00	1	1	0	0
...........................................AGGCTTCCATGCCTC.........................................................................................................................................................................	15	1	3	1.00	3	3	0	0
........................................AGAAGGCTTCCATGCCT..........................................................................................................................................................................	17	2	4	0.50	2	2	0	0
...........................................AGGCTTCCATGCCTCC........................................................................................................................................................................	16	2	18	0.44	8	8	0	0
.........................................GAAGGCTTCCATGCCTC.........................................................................................................................................................................	17	2	4	0.25	1	0	1	0
.........................................GAAGGCTTCCATTCC...........................................................................................................................................................................	15	1	4	0.25	1	1	0	0
............................................GGCTTCCATTCCTCC........................................................................................................................................................................	15	1	6	0.17	1	1	0	0
..........................................AAGGCTTCCATGCCTCCG.......................................................................................................................................................................	18	3	20	0.15	3	3	0	0
........................................................................AGTTCTAGAGATGCGTA..........................................................................................................................................	17	2	9	0.11	1	1	0	0
..........................................................................................................................................................................................AAAATAATCCTATTCCATGT.....................	20	3	19	0.11	2	0	0	2
...........................................AGGCTTCCATGCCTCCG.......................................................................................................................................................................	17	3	20	0.10	2	2	0	0
.........................................GAAGGCTTCCATGCCT..........................................................................................................................................................................	16	2	12	0.08	1	1	0	0
.........................................TAAGGCTTCCTTTCC...........................................................................................................................................................................	15	1	12	0.08	1	1	0	0
....................................TTCGCTAGGGCTTCCAT..............................................................................................................................................................................	17	2	16	0.06	1	0	1	0
........................................AGAAGGCTTCCATGCC...........................................................................................................................................................................	16	2	17	0.06	1	1	0	0
.......................................AAGAAGGCTTCCATTC............................................................................................................................................................................	16	2	20	0.05	1	1	0	0
........................................................................................................................................................................ATAAAGATCGGTATCGT..........................................	17	2	20	0.05	1	0	1	0

Species	Coordinate	ID	Alignment
droSim2	node_14979:3377-3603 -	dsi_1911	T-GGCAAAAGGTTTAGCAAATTTAGTTAGTCTGAAGTAAGCTATTCCGAAGGTAAGGAGCTCA--TATTTACTATTCAAGATCTCTA-TACATT-----------------------------AAATTACTATTTATAGA---------------------------------------------------------------------------------------------------------TACCAAAAAAATGTAATTTATTTATAGACATTTATTAGTTCAG-----------A-------------------------------------------------------------------------------------------------------TAGTAAT-GGTATGTATA-------------------------------------------------------------------------------------------------------TATTTCTAGCCATATAAATTTTATGAGGATAAGCTCCAAACAAATTC--C---GTCATAATGGC
droSec2	scaffold_192:37522-37747 +		T-GGCAAAAGGTTTAGCAAATTTAGTTAGTCTGAAGTAAGCTATTCCGAAGGTAAGGAGCTCA--TATTTACTATTCAAGAACTTTA-TACATT-----------------------------AAATTACTATTTATAGA---------------------------------------------------------------------------------------------------------TACCAAAA-AATGTAATTTATTTATAGACATTTATTAGTTCAG-----------A-------------------------------------------------------------------------------------------------------TAGTAAT-GGTATGTATA-------------------------------------------------------------------------------------------------------TATTTCTAGCCATATAAATTTTATGAGGATAAGCTCCAAACAAATTC--C---GTCATAATGGC
dm3	chr2RHet:1742111-1742335 -		T-GGCAAAAGGTTTAGCAAATTTAGTTAGTCTGAAGTAAGCTATTCCGAAGGTAAGGAGCTCA--TATTTACTATTCAAGAACTTTT-TACCTA-----------------------------AAAGTACTATTTATAGA---------------------------------------------------------------------------------------------------------TACCAAAAAATTTTAATTTATTTATAGACTTTTATTAGTTCAG-----------A-------------------------------------------------------------------------------------------------------TAGTAAT-GGTATT---------------------------------------------------------------------------------------------------------TCTACTTTTAGCTATTTACATTTTATGAGGATAAGCTCCAAACAAATTC--C---GTCATAATGGC
droEre2	scaffold_4929:23718575-23718824 -		T-GGCAAAAGGTTTAGCAAATTTAGTTAGTCTGAAGTAAGCTATTCCGAAGGTAAGCAGCTCA--TATTTACTATTCAAGAACTTTT-TACCTT-----------------------------AAATCACTATTTATAGA---------------------------------------------------------------------------------------------------------TAATACAAAAATGTAATTTATTTATA-----------GTTCAGATATAGTTTAGATATAGAACCAT---------------------------------------------------------------------------------A------TATATACTAAT-GGTGTGCATA-----------------------------------------------------------------TA---------TA----------------------TACTATTTCTAGCTATATAAATTTTATGAGGATAAGCTCAAAACAAATAC--C---GTCATAATGGC
droYak3	chr2h:498531-498790 -		T-GGCAAGAGGTTTAGCAAATTTAGTTAGTCTAAAGTAAGCTATTCCGAAGGTAAGGAGCTCA--TATTTACTATTCAAGAAATTTGTTATCTA-----------------------------AAACCACTATTTATAGA---------------------------------------------------------------------------------------------------------AACTAAAA-AATTTGATTTATTTATAAACTTATATTAGTTTAG-----------ATATAGAACCATATGTATATAT-----------------------------------------------------------------------G------TATATAGTAAT-GGTGTCCATA-----------------------------------------------------------------TA---------TA----------------------TAATATTTCTAGCTATATCAATTTTATGAAGATAAGCTCAAAACAACTAC--C---GTCATAATGGC
droEug1	scf7180000405005:3362-3680 +		T-GGCAAAACGTGCAGAAAATTAAGTTAGTCTGAAGTAAGCTTTTCCGAAGGTAAGGAGCTAA--TATTCACTAAAAAACCTC--TA-TAAATA-----------------------------AATTTATTTATAATTTTAAATAAATTTATTTAT---AATTTTTAAATAAATT-------------TATTTATAA-TTTTTATAAATAAAT-------------TTATTTATTTA----TAGAAACTTAAGAGATG-AATTTATTTTTAAATATTTGT---------------ATATTTAAAGATCCAC---------------------------------------------------------------------------------A------TAGATAATAAT-AGTATGTATT-------------------------------------------------------------TGCACA---------CA----------------------TAATATTTCTAGTTACAAA-ATTTTAAGAGAGCTAGCTCAAAACAATTTATAT---ATAAAAATGGC
droBia1	scf7180000302250:75974-76339 -		TTGGCAAAAGATACACAAAATTTAGTTAGTCTGAAGTAATCCATTCAGAAGGTAAGGAGCTAA--TATTTACCAGTTAATTACTTAA-AACTTA-----------------------------TAAAGGCTCATAATAGAAAATTGG----TATACGAAAATATTTAATAAAATA-------------AACGCATGGT---------------TGCCACAGAAATCATATCAGC------------GC----------TAAGTCATTTAAA-----------ATATATATATA-------------------------TTTATACACATAGAAAGCTAAATGGGCGCTGTACGATATCTGTGGCACTCCGATGAATAAAAATATTGGTGCGTATGTAGGTATACTCTAAT-GATTTA------------------------------------------------------------T---ATATATA---------TA----------------------TATTATTTCTAGTTGCAACATTTTTATTAGGATTAGCTCTGAGCCCATAA--C---GTCATAATGGC
droTak1	scf7180000413396:30761-30976 +		T-GGTAAAAGATGCATCAAATTTAGTTAGTCTGAAGTAAGCTATTCCGAAGGTAAGGAGCTAA--TATTTACTAGTCAACAACTTTA-AAGAT------------------------------AAATTATTTTTTGTAGAAATTACG----GATACGAATATATTTATAATAA-----------------------------------------------------------------------------------------TTTTTTGCAA-----TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT--TT----------------------TTTAATTCCTAGTGACCATTTTTTTATGAGGATTAGCTTAAAGCAAATAA--C---GTCATAATGGC
droEle1	scf7180000488745:19258-19462 -		T-GGCAAAAGGTGCAGAAAATTTAGTTAGTCTGAAGTTAGCTTTTCCGAAGGTAAGGAGCTAA--TATTTACTATTCAACAACTTTC-AAACAA-----------------------------AAATTTCTGTTTAAACA---------------------------------------------------------------------------------------------------------TA-----------------------------------------------------------AACAT---------------------------------------------------------------------------------A------TATATAAAAATAGGTT--------AA----------------------------------------------------C---TTATAAA---------TA----------------------AATTATTTCTAGTTTCAACATTTTTATGTGGATAAGTTCAAATCATATAA--C---GTCATAATGGC
droRho1	scf7180000773850:10736-10990 +		T-GGCAAAAGGTGCAGAAAATTTAGTTAGTCTGAAGTTAGCTATTCCGAAGGTAAGGAGCTAA--TATTTACTAGGCAACAACTTTC-AAAGTA-----------------------------AAATTTCTATTTATAGAAACTATA----TATAAGAATATATTTATTATCA------------------------------------------------------------------------------------------------------TACAT------------------------------------------------------------------------------------------------TGACAAATGGGTACATA------TATATTATTTC-AGTATGTATTTAAA----------------------------------------------------C---TTAAATA---------TA----------------------TATTATTTCTAGTTTCAACATTTTTATGAGGATAAGTTGAAAACATTTAA--C---GTCATAATGGC
droFic1	scf7180000453701:10672-10929 +		T-GGCAAGAGGTGCAGAAAATTTAGTTAGTCTAAAGTAAGCTATTCTAAAGGTAAGGAGCTAA--TATTTACTAGA--ACAAAGTTAAAACCCA-----------------------------AAACTAATGTTTATATA---------------------------------------------------------------------------------------------------------AA-----------------------------------------------------------TACATATGTATATTTATATATA------------------------------------ACTGCAGT---TTAAAATATTAGTATATA------TAT----------GTT--------TA----------------------------------------------------T---TTATACA---------TACATAATATAAGTCTATTTTTAATGATATTTCTAGGGTCAATATTTTTATGACGATTAGCTCAAAAGAAATAA--C---ACCATAATGGC
droKik1	scf7180000299506:6912-7153 +		G---------ATATACAACACTTAGTTAGTCTGAAGTAAACTACTCCAAAGGTAAGGAGCAAT--TATTTACTACCTTACTAACTTA-AACAT------------------------------------TTAATTAAAAAAAAGATA----TATAT---AA--TATATTAATATACTTTAACGTATCAAAATTACGT-TCCTTAAAATTAAGT-------------TCAAACATTTAA---ATGAAATTTAACAATCG-CTTATTTACTAATACATATGA---------------ATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTTTTTAGTTT----------------------------CAAGTAC--C---GTCGTAATGGC
droAna3	scaffold_13230:3455670-3455934 -		T-GGCAACAGCACCAGAAAATTCAGTTAGTCTAAAGTAAGCTACTCCGAAGGTAAGTACCTAC--TATTTACTAAAGAAAAG----------TAAAAATTACACATATATTTGGATCACTTTT-----------TGTTGA---------------------------------------------------------------------------------------------------------GATCAATT-TAACAAAATTTTTTGTAG-----TATTCGATTCG-----------A-------------------------------------------------------------------------------------------------------TAGT------------------------------------------ATATTCGATTATAAATCCCACCAAACTAATCCCTATCCATTTA--ATTTA----------------------TTTTGCTTATAGCT--CACTATTTTATGACGATTGAAATT-AAGTAACAG--C---GTTATAATGGC
droBip1	scf7180000396712:3273653-3273869 -		T-GGCAAGAGCACCAGAAAATTCAGTTAGTCTAAAGTAAGCTACTCCAAAGGTAAGTACCTAC--TATTTACTAAAGAAGAG----------TGGAA-------------------------------------TATACA---------------------------------------------------------------------------------------------------------CA-----------------------------------------------------------ATCCT---------------------------------------------------------------------------------T------TTTACATTTATTTGTT--------GTTATTAAATTTAATTTCTACTAATTTA--------------------------A---CTATCGATTTA--ATT-------------------------TTCCCCCTTAGAGCTCACTATTTTATGTCGATTAAAACT-AACTAACAG--T---GTAATAATGGC
dp5	Unknown_singleton_2543:438-630 -		G-GT-------TTGAGCAAATTTAGTTAGTCTAAAGTAAGCAATTCTTAAGGTAAGGAGCTATTATATTTACTATGTCCGGGTTTTAAT--AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------TAGCCTTCATAAGACTGTATGACTTCGACTCTTCCTCAACTCATCGTT---------------------------------------TGATTTTCTAATTTCAGCACTTTTATGCGGATTAAGAAAATAGAAATAC--C---ATCATAATGGC
droPer2	scaffold_70:271400-271592 +		G-GT-------TTGAGCAAATTTAGTTAGTCTAAAGTAAGCAATTCTTAAGGTAAGGAGCTATTATATTTACTATGTCTGGGTTTTAAT--AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------TAGCCTTCATAAGACTGTATGACTTCGACTCTTCCTCAACTCATCGTT---------------------------------------TGTTTTTCTAATTTCAGCACTTTTATGCGGATTAAGAAAATAGAAATAC--C---ATCATAATGGC
droWil2	scf2_1100000004965:328601-328652 +		G-TTTAA-------ATTAAATGCAGTTAGTTTAAAGTAAGGGATTCTTCAGGTAAGATGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12963:14277724-14277896 +		C-GTCAA------TAACAACTTTAGTTAGTTTGAATTAAGCGAATCTTAAGGTAGTAATTAAA--TAAAT-----------------------------------------------------------------------------------------------------------------------------------------------TGCCACAAAGATC--------TGAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAATATTATTGTTAATAAAGGACAAA---------------------------------TCTGTTA--TT-----------------------ACTA--TTTCGCTTAGGGCATTTTATGAATAAT------AAAGGAACTG--T---GTTATAATGGC
droMoj3	scaffold_6500:30765447-30765614 +		C-ATCAA------TAACAACTTTAGTTAGCTTGAATTAAGCGAATCTTAAGGTACTTCAGAATTTTGTTT----------------------------------------------------------------------------------------------------------------------------------------------------AAAACAGT--------TCAAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTAAGATTTATTGTTAATAAAGGAATAACA-------------------------------TTTA--A-----------------------------TAGCTTTCCTTATAGATATTTTATGATTATA------AAATAAACAG--T---GATAAAATGGC
droGri2	scaffold_15126:1591658-1591842 -		C-GTCAA------TAAAAACTTTAGTTAGTTTGAATTAAGCGAATCTTAAGGTAGTTTAGA-A--TA--T-----------------------------------------------------------------------------------------------------------------------------------------------TGCTATAA-----------------------------------GGTGCTTGAATGAAAGTCATATATTAGTTCATAAGAC----------------------------------------------------------------------------------------------------------------------------------------------C--TGTCACTAAAGGAC-AACA-------------------------------TTTGTTA-----------------------------TTGTTTTCGTTCAAGAAATTTTATGCATAATA------AACGAACAG--TGATATTATAATGGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

T-GGCAAAAGGTTTAGCAAATTTAGTTAGTCTGAAGTAAGCTATTCCGAAGGTAAGGAGCTCA--TATTTACTATTCAAGATCTCTA-TACATT-----------------------------AAATTACTATTTATAGA---------------------------------------------------------------------------------------------------------TACCAAAAAAATGTAATTTATTTATAGACATTTATTAGTTCAG-----------A-------------------------------------------------------------------------------------------------------TAGTAAT-GGTATGTATA-------------------------------------------------------------------------------------------------------TATTTCTAGCCATATAAATTTTATGAGGATAAGCTCCAAACAAATTC--C---GTCATAATGGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................................TTCAG-----------A-------------------------------------------------------------------------------------------------------TAGTAAT-GGTATGTATA-------------------------------------------------------------------------------------------------------TATT............................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTC--C---GTCATAATGGC	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................TAGA---------------------------------------------------------------------------------------------------------TACCAAAAAAATGTAATTTATT.................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TTAGTTCAG-----------A-------------------------------------------------------------------------------------------------------TAGTAAT-GGTATGTA.........................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAT-GGTATGTATA-------------------------------------------------------------------------------------------------------................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

T-GGCAAAAGGTTTAGCAAATTTAGTTAGTCTGAAGTAAGCTATTCCGAAGGTAAGGAGCTCA--TATTTACTATTCAAGAACTTTA-TACATT-----------------------------AAATTACTATTTATAGA---------------------------------------------------------------------------------------------------------TACCAAAA-AATGTAATTTATTTATAGACATTTATTAGTTCAG-----------A-------------------------------------------------------------------------------------------------------TAGTAAT-GGTATGTATA-------------------------------------------------------------------------------------------------------TATTTCTAGCCATATAAATTTTATGAGGATAAGCTCCAAACAAATTC--C---GTCATAATGGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGAGGATAAGCTCCAAACAAATT..................	29	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTTATGAGGATAAGCTC............................	21	1	1.00	1	1	0	0	0

dm3

T-GGCAAAAGGTTTAGCAAATTTAGTTAGTCTGAAGTAAGCTATTCCGAAGGTAAGGAGCTCA--TATTTACTATTCAAGAACTTTT-TACCTA-----------------------------AAAGTACTATTTATAGA---------------------------------------------------------------------------------------------------------TACCAAAAAATTTTAATTTATTTATAGACTTTTATTAGTTCAG-----------A-------------------------------------------------------------------------------------------------------TAGTAAT-GGTATT---------------------------------------------------------------------------------------------------------TCTACTTTTAGCTATTTACATTTTATGAGGATAAGCTCCAAACAAATTC--C---GTCATAATGGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................TTAGTTCAG-----------A-------------------------------------------------------------------------------------------------------TAGTAAT-GGTA.............................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGATAAGCTCCAAACA......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTACATTTTATGAGG....................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATTTTATGAGGATAAGCTCCA..........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GTAAGCTATTCCGAAGGTAAGGAGCTCA--TA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................AGGTAAGGAGCTCA--TATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGCTCCAAACAAATTC--C---GTCAT......	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGGATAAGCTCCAAAC.......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGAGGATAAGCTCCA..........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTACATTTTATGAGGATAAGCT.............................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACATTTTATGAGGATAAGCTCCA..........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TATTCCGAAGGTAAGGAGCTCA--TATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CTGAAGTAAGCTATTCCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AGTCTGAAGTAAGCTATTCCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTTATGAGGATAAG...............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGATAAGCTCCAAACA......................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGATAAGCTCCAAAAT......................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

T-GGCAAAAGGTTTAGCAAATTTAGTTAGTCTGAAGTAAGCTATTCCGAAGGTAAGCAGCTCA--TATTTACTATTCAAGAACTTTT-TACCTT-----------------------------AAATCACTATTTATAGA---------------------------------------------------------------------------------------------------------TAATACAAAAATGTAATTTATTTATA-----------GTTCAGATATAGTTTAGATATAGAACCAT---------------------------------------------------------------------------------A------TATATACTAAT-GGTGTGCATA-----------------------------------------------------------------TA---------TA----------------------TACTATTTCTAGCTATATAAATTTTATGAGGATAAGCTCAAAACAAATAC--C---GTCATAATGGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................TAAGCAGCTCA--TATTTACTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAGGATAAGCTCAAA.........................	20	1	1.00	1	1	0	0	0	0	0	0
...........................AGTCTGAAGTAAGCTATTCCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0

droYak3

T-GGCAAGAGGTTTAGCAAATTTAGTTAGTCTAAAGTAAGCTATTCCGAAGGTAAGGAGCTCA--TATTTACTATTCAAGAAATTTGTTATCTA-----------------------------AAACCACTATTTATAGA---------------------------------------------------------------------------------------------------------AACTAAAA-AATTTGATTTATTTATAAACTTATATTAGTTTAG-----------ATATAGAACCATATGTATATAT-----------------------------------------------------------------------G------TATATAGTAAT-GGTGTCCATA-----------------------------------------------------------------TA---------TA----------------------TAATATTTCTAGCTATATCAATTTTATGAAGATAAGCTCAAAACAACTAC--C---GTCATAATGGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATTTTATGAAGATAAGC..............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAAGATAAGCTCAAA.........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATAAGCTCAAAACAAC....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGCTCAAAACAACTAC--C---GT.........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTATGAAGATAAGCTCA...........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAAGATAAGCTCAAAACAACTA..................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAAGATAAGCTCAAAACA......................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGAAGATAAGCTCA...........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................AGTCTAAAGTAAGCTATTCCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAACTAC--C---GTCATAA....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCTCAAAACAACTAC--C---GTCA.......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

T-GGCAAAACGTGCAGAAAATTAAGTTAGTCTGAAGTAAGCTTTTCCGAAGGTAAGGAGCTAA--TATTCACTAAAAAACCTC--TA-TAAATA-----------------------------AATTTATTTATAATTTTAAATAAATTTATTTAT---AATTTTTAAATAAATT-------------TATTTATAA-TTTTTATAAATAAAT-------------TTATTTATTTA----TAGAAACTTAAGAGATG-AATTTATTTTTAAATATTTGT---------------ATATTTAAAGATCCAC---------------------------------------------------------------------------------A------TAGATAATAAT-AGTATGTATT-------------------------------------------------------------TGCACA---------CA----------------------TAATATTTCTAGTTACAAA-ATTTTAAGAGAGCTAGCTCAAAACAATTTATAT---ATAAAAATGGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTGGCAAAAGATACACAAAATTTAGTTAGTCTGAAGTAATCCATTCAGAAGGTAAGGAGCTAA--TATTTACCAGTTAATTACTTAA-AACTTA-----------------------------TAAAGGCTCATAATAGAAAATTGG----TATACGAAAATATTTAATAAAATA-------------AACGCATGGT---------------TGCCACAGAAATCATATCAGC------------GC----------TAAGTCATTTAAA-----------ATATATATATA-------------------------TTTATACACATAGAAAGCTAAATGGGCGCTGTACGATATCTGTGGCACTCCGATGAATAAAAATATTGGTGCGTATGTAGGTATACTCTAAT-GATTTA------------------------------------------------------------T---ATATATA---------TA----------------------TATTATTTCTAGTTGCAACATTTTTATTAGGATTAGCTCTGAGCCCATAA--C---GTCATAATGGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T-GGTAAAAGATGCATCAAATTTAGTTAGTCTGAAGTAAGCTATTCCGAAGGTAAGGAGCTAA--TATTTACTAGTCAACAACTTTA-AAGAT------------------------------AAATTATTTTTTGTAGAAATTACG----GATACGAATATATTTATAATAA-----------------------------------------------------------------------------------------TTTTTTGCAA-----TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT--TT----------------------TTTAATTCCTAGTGACCATTTTTTTATGAGGATTAGCTTAAAGCAAATAA--C---GTCATAATGGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T-GGCAAAAGGTGCAGAAAATTTAGTTAGTCTGAAGTTAGCTTTTCCGAAGGTAAGGAGCTAA--TATTTACTATTCAACAACTTTC-AAACAA-----------------------------AAATTTCTGTTTAAACA---------------------------------------------------------------------------------------------------------TA-----------------------------------------------------------AACAT---------------------------------------------------------------------------------A------TATATAAAAATAGGTT--------AA----------------------------------------------------C---TTATAAA---------TA----------------------AATTATTTCTAGTTTCAACATTTTTATGTGGATAAGTTCAAATCATATAA--C---GTCATAATGGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T-GGCAAAAGGTGCAGAAAATTTAGTTAGTCTGAAGTTAGCTATTCCGAAGGTAAGGAGCTAA--TATTTACTAGGCAACAACTTTC-AAAGTA-----------------------------AAATTTCTATTTATAGAAACTATA----TATAAGAATATATTTATTATCA------------------------------------------------------------------------------------------------------TACAT------------------------------------------------------------------------------------------------TGACAAATGGGTACATA------TATATTATTTC-AGTATGTATTTAAA----------------------------------------------------C---TTAAATA---------TA----------------------TATTATTTCTAGTTTCAACATTTTTATGAGGATAAGTTGAAAACATTTAA--C---GTCATAATGGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

T-GGCAAGAGGTGCAGAAAATTTAGTTAGTCTAAAGTAAGCTATTCTAAAGGTAAGGAGCTAA--TATTTACTAGA--ACAAAGTTAAAACCCA-----------------------------AAACTAATGTTTATATA---------------------------------------------------------------------------------------------------------AA-----------------------------------------------------------TACATATGTATATTTATATATA------------------------------------ACTGCAGT---TTAAAATATTAGTATATA------TAT----------GTT--------TA----------------------------------------------------T---TTATACA---------TACATAATATAAGTCTATTTTTAATGATATTTCTAGGGTCAATATTTTTATGACGATTAGCTCAAAAGAAATAA--C---ACCATAATGGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

G---------ATATACAACACTTAGTTAGTCTGAAGTAAACTACTCCAAAGGTAAGGAGCAAT--TATTTACTACCTTACTAACTTA-AACAT------------------------------------TTAATTAAAAAAAAGATA----TATAT---AA--TATATTAATATACTTTAACGTATCAAAATTACGT-TCCTTAAAATTAAGT-------------TCAAACATTTAA---ATGAAATTTAACAATCG-CTTATTTACTAATACATATGA---------------ATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTTTTTAGTTT----------------------------CAAGTAC--C---GTCGTAATGGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

T-GGCAACAGCACCAGAAAATTCAGTTAGTCTAAAGTAAGCTACTCCGAAGGTAAGTACCTAC--TATTTACTAAAGAAAAG----------TAAAAATTACACATATATTTGGATCACTTTT-----------TGTTGA---------------------------------------------------------------------------------------------------------GATCAATT-TAACAAAATTTTTTGTAG-----TATTCGATTCG-----------A-------------------------------------------------------------------------------------------------------TAGT------------------------------------------ATATTCGATTATAAATCCCACCAAACTAATCCCTATCCATTTA--ATTTA----------------------TTTTGCTTATAGCT--CACTATTTTATGACGATTGAAATT-AAGTAACAG--C---GTTATAATGGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGATTGAAATT-AAGT......................	18	1	1.00	1	0	0	0	0	0	1

droBip1

T-GGCAAGAGCACCAGAAAATTCAGTTAGTCTAAAGTAAGCTACTCCAAAGGTAAGTACCTAC--TATTTACTAAAGAAGAG----------TGGAA-------------------------------------TATACA---------------------------------------------------------------------------------------------------------CA-----------------------------------------------------------ATCCT---------------------------------------------------------------------------------T------TTTACATTTATTTGTT--------GTTATTAAATTTAATTTCTACTAATTTA--------------------------A---CTATCGATTTA--ATT-------------------------TTCCCCCTTAGAGCTCACTATTTTATGTCGATTAAAACT-AACTAACAG--T---GTAATAATGGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

G-GT-------TTGAGCAAATTTAGTTAGTCTAAAGTAAGCAATTCTTAAGGTAAGGAGCTATTATATTTACTATGTCCGGGTTTTAAT--AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------TAGCCTTCATAAGACTGTATGACTTCGACTCTTCCTCAACTCATCGTT---------------------------------------TGATTTTCTAATTTCAGCACTTTTATGCGGATTAAGAAAATAGAAATAC--C---ATCATAATGGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCGGATTAAGAAAAT.........................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGATTAAGAAAATAGAAA....................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGATTAAGAAAATAGA......................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGCGGATTAAGAAAAT.........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTTTATGCGGATTAAGAAAA..........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGATTAAGAAAATAGAA.....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTTTTATGCGGATTAAG..............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGATTAAGAAAATAGAAATAC--...............	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0

droPer2

G-GT-------TTGAGCAAATTTAGTTAGTCTAAAGTAAGCAATTCTTAAGGTAAGGAGCTATTATATTTACTATGTCTGGGTTTTAAT--AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------TAGCCTTCATAAGACTGTATGACTTCGACTCTTCCTCAACTCATCGTT---------------------------------------TGTTTTTCTAATTTCAGCACTTTTATGCGGATTAAGAAAATAGAAATAC--C---ATCATAATGGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGCGGATTAAGAAAAT.........................	20	1	3.00	3	0	0	0	0	0	3
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGATTAAGAAAATAGA......................	19	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCGGATTAAGAAAAT.........................	19	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTTTTATGCGGATTAAGA.............................	22	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTATGCGGATTAAGAAA...........................	20	1	1.00	1	0	0	0	1	0	0

droWil2

G-TTTAA-------ATTAAATGCAGTTAGTTTAAAGTAAGGGATTCTTCAGGTAAGATGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................AATGCAGTTAGTTTAAAGTAAGGGATTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
................................AAAGTAAGGGATTCTTCAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0

droVir3

C-GTCAA------TAACAACTTTAGTTAGTTTGAATTAAGCGAATCTTAAGGTAGTAATTAAA--TAAAT-----------------------------------------------------------------------------------------------------------------------------------------------TGCCACAAAGATC--------TGAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAATATTATTGTTAATAAAGGACAAA---------------------------------TCTGTTA--TT-----------------------ACTA--TTTCGCTTAGGGCATTTTATGAATAAT------AAAGGAACTG--T---GTTATAATGGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AAAGGAACTG--T---GTTATAAT...	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACAAA---------------------------------TCTGTTA--TT-----------------------AC................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAATAAT------AAAGGAAC...................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACAAA---------------------------------TCTGTTA--TT-----------------------..................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT------AAAGGAACTG--T---GTTATA.....	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT------AAAGGAACTG--T---GTTATAAT...	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAATAAT------AAAGGAACT..................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGCCACAAAGATC--------TGAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAC..............................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAT------AAAGGAACTG--T---GTTATAAT...	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AGTTTGAATTAAGCGAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGACAAA---------------------------------TCTGTTA--TT-----------------------ACT...............................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AGTTAGTTTGAATTAAGCGAATCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TAAGCGAATCTTAAGGTAGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACAAA---------------------------------TCTGTTA--TT-----------------------ACT...............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AGTTTGAATTAAGCGAATCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTTTGAATTAAGCGAATCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TAGTTTGAATTAAGCGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAATAAT------AAAGGAACTG--T---GT.........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------ACTA--TTTCGCTTAGGGCATTTTATGAAT....................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATATTATTGTTAATAAAGGACAAA---------------------------------T...................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTAGTTAGTTTGAATTAAGCGAATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAATAAT------AAAGGAACTG--T---GTT........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TTTGAATTAAGCGAATCTTAAGGTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAT------AAAGGAACTG--T---GTTATAAT...	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTA--TT-----------------------ACTA--TTTCGCTTAGGG................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................T-----------------------------------------------------------------------------------------------------------------------------------------------TGCCACAAAGATC--------TGAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAC..............................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TAAA--TAAAT-----------------------------------------------------------------------------------------------------------------------------------------------TGCCACAAAGATC--------TGAAC.............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAT------AAAGGAACTG--T---GTTA.......	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GCCACAAAGATC--------TGAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAT...........................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AGTTTGAATTAAGCGAATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------------------TCTGTTA--TT-----------------------ACTA--TTTCGCTT....................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TGAATTAAGCGAATCTTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AGTTTGAATTAAGCGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACAAA---------------------------------TCTGTTA--TT-----------------------A.................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAATAAT------AAAGGAACTG--T---...........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTTTGAATTAAGCGAATCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTATTGTTAATAAAGGACAAA---------------------------------T...................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAATAAT------AAAGGAAC...................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAATAAT------AAAGGAACTG--T---...........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AT-----------------------------------------------------------------------------------------------------------------------------------------------TGCCACAAAGATC--------TGAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A..................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TTTGAATTAAGCGAATCTTAAGGGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................AGCGAATCTTAAGGTAGTAATTAAA--TA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TGAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAATATTA.......................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TT-----------------------ACTA--TTTCGCTTAGGGCATT............................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GCCACAAAGATC--------TGAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA.................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AGTTTGAATTAAGCGAATCTTAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TTGAATTAAGCGAATCTTAAGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAAGGACAAA---------------------------------TCTGTTA--TT-----------------------A.................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAT------AAAGGAACTG--T---GTT........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGCCACAAAGATC--------TGAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATATTATTGTTAATAAAGGACAA......................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TTGAATTAAGCGAATCTTAAGGGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TGAATTAAGCGAATCTTAAGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AGTTTGAATTAAGCGAATCTTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGGCATTTTATGAATAAT------AAAGGAC....................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAAT------AAAGGAACTG--T---GTTAT......	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA--TT-----------------------ACTA--TTTCGCTTAGGGCATT............................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TTAAGCGAATCTTAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TGAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAATATTATTGT...................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GAATTAAGCGAATCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------AAAGGAACTG--T---GTTATAATGGC	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTTAATAAAGGACAAA---------------------------------TCTGT...............................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GAATTAAGCGAATCTTAAGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATAAAGGACAAA---------------------------------TCTGTT..............................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................T-----------------------------------------------------------------------------------------------------------------------------------------------TGCCACAAAGATC--------TGAACT............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------------------ACTA--TTTCGCTTAGGGCATT............................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTA--TT-----------------------ACTA--TTTCGCTTAGGGC...............................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TAGTTAGTTTGAATTAAGCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------------------ACTA--TTTCGCTTAGGGCAT.............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TAGTTTGAATTAAGCGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---------------------------------TCTGTTA--TT-----------------------ACTA--TTTCGCTT....................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT------AAAGGAACTG--T---GTTATAATGG.	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAAGGACAAA---------------------------------TCTGTT..............................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

C-ATCAA------TAACAACTTTAGTTAGCTTGAATTAAGCGAATCTTAAGGTACTTCAGAATTTTGTTT----------------------------------------------------------------------------------------------------------------------------------------------------AAAACAGT--------TCAAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTAAGATTTATTGTTAATAAAGGAATAACA-------------------------------TTTA--A-----------------------------TAGCTTTCCTTATAGATATTTTATGATTATA------AAATAAACAG--T---GATAAAATGGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

C-GTCAA------TAAAAACTTTAGTTAGTTTGAATTAAGCGAATCTTAAGGTAGTTTAGA-A--TA--T-----------------------------------------------------------------------------------------------------------------------------------------------TGCTATAA-----------------------------------GGTGCTTGAATGAAAGTCATATATTAGTTCATAAGAC----------------------------------------------------------------------------------------------------------------------------------------------C--TGTCACTAAAGGAC-AACA-------------------------------TTTGTTA-----------------------------TTGTTTTCGTTCAAGAAATTTTATGCATAATA------AACGAACAG--TGATATTATAATGGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................AGTTTGAATTAAGCGAATCTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0

-6.9	-6.3	-6.2	-6.2

dsi_1911

node_14979:3427-3553 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads