ID:

dsi_191

 Coordinate:

2l:13735597-13735652 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.6 -6.5 -6.5

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_191  2l:13735604-13735626 -
  2. node_93918:97-119 -
  3. node_43385:34-56 -
  4. node_123614:93-115 +
  5. node_52548:96-118 -
  6. node_54670:848-870 +
  7. node_69143:131-153 -
  8. node_64018:114-136 -
  9. node_131474:124-146 -
  10. node_79765:400-422 +
  11. node_71253:72-94 +
  12. node_67743:31-53 +
  13. node_73031:191-213 -
  14. node_75979:559-581 -
  15. node_34109:238-260 +
  16. node_43724:22-44 -
  17. node_66089:284-306 +
  18. node_86828:18-40 -
  19. node_93589:38-60 +
  20. node_128430:170-192 +
star

Sense Strand Reads

CGGCACAGTGCAAATATAGTTTTTGTTTATGGTATATAATTCTAGTGATTGTCAACTTAATATTTTTAACATATATTTACCGAATATTTTTAAGTAAACTTAATCTTTCTAGTATATTTTTAATTTATAATTTTTGATAATTTTATATATAATGTT
***********************************......((((.(((((...((((((............((((((...))))))..)))))).....)))))...)))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
............................................................................TTACCGAATATTTTTAAGTAAAC......................................................... 23 0 20 5.40 108 108 0 0 0 0 0 0 0 0
..............TATAGTTTTTGTTTATGGTATATAA..................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............AATATAGTTTTTGTTTATGGTATATAA..................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................ATGCTTGTGATTGTCAACT................................................................................................... 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0
............................................GTGATTGTCAACTTAATATTTTTAACA..................................................................................... 27 0 4 0.25 1 0 0 0 1 0 0 0 0 0
...........................................AGTGATTGTCAACTTAATATTTTTAACATA................................................................................... 30 0 4 0.25 1 0 0 0 0 0 1 0 0 0
.............................................................................TACCGAATATTTTTAAGTAAACTT....................................................... 24 0 20 0.15 3 0 0 0 0 0 1 1 0 1
.........................................................................................TTAAGTAAACTTAATCTTTCTAGTATA........................................ 27 0 20 0.15 3 0 2 0 1 0 0 0 0 0
..............................................................................................TAAACTTAATCTTTCTACTATATTT..................................... 25 1 20 0.10 2 0 0 2 0 0 0 0 0 0
...............................................................................CCGAATATTTTTAAGTAAACTTAAT.................................................... 25 0 20 0.10 2 0 0 0 1 0 0 0 1 0
..........................................................................................TAAGTAAACTTAATCTTTCTAGTA.......................................... 24 0 20 0.10 2 0 0 0 2 0 0 0 0 0
............AATATAGTTTTTGTTTATGAT........................................................................................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 1 0
...............................................................................CCGAATATTTTTAAGTAAACTTAATC................................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0
.............................................................................TACCGAATATTTTTAAGTAAACT........................................................ 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0
.........................................................................TATTTACCGAATATTTTTAAGTAAACT........................................................ 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0
......AGTGCAAATATAGTTTTTGTTTATGGTA.......................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 1
..........................................................................................TAAGTAAACTTAATCTTTCTAGTATA........................................ 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...........................................................................TTTACCGAATATTTTTAAGTA............................................................ 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0
............AATATAGTTTTTGTTTATGGTATATA...................................................................................................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................TTTGATAATTTTATATATAATGTT 24 0 20 0.05 1 0 0 0 0 0 0 0 1 0
.............................................................................TACCGAATATTTTTAAGTAAACTTGA..................................................... 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0
...........................................................................TTTACCGAATATTTTTAAGTAAACT........................................................ 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0
............AATATAGTTTTTGTTTATGGCAT......................................................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 1 0 0
............AATATAGTTTTTGTTTATGG............................................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0
........................................................................................................CTTTCTAGTATATTTTTAATTTA............................. 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0
......................................................................................TTTTTAAGTAAACCTAATCTTTCTAGTATA........................................ 30 1 20 0.05 1 0 1 0 0 0 0 0 0 0
........TGCAAATATAGTTTTTGTTTATGGTA.......................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0
..............TATAGTTTTTGTTTAT.............................................................................................................................. 16 0 20 0.05 1 0 0 0 0 0 0 1 0 0
.................................................TGTCAACTTAATATTTTTAACAA.................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.................................................TGTCAACTTAATATTTATAACATA................................................................................... 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0
.................................................TGTCAACTTAATATTTTTAACATATATT............................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 1 0 0
........................................................................................................CTTTCTAGTATATTTTTTATTTATAA.......................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0
...............................................................................CCGAATATTTTTAAGTAAACTTAATA................................................... 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GCCGTGTCACGTTTATATCAAAAACAAATACCATATATTAAGATCACTAACAGTTGAATTATAAAAATTGTATATAAATGGCTTATAAAAATTCATTTGAATTAGAAAGATCATATAAAAATTAAATATTAAAAACTATTAAAATATATATTACAA
***********************************......((((.(((((...((((((............((((((...))))))..)))))).....)))))...)))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR902009
testis
 M053
female body
 M025
embryo
..................................ATATTAAGATCACTAACAGTTGAAT................................................................................................. 25 0 1 72.00 72 28 39 0 4 0 1 0 0 0
....................................................................................ATAAAAATTCATTTGAATTAGAAAGATCAT.......................................... 30 0 20 23.85 477 302 4 151 20 0 0 0 0 0
............................................................ATAAAAATTGTATATAAATGGCTT........................................................................ 24 0 20 21.15 423 423 0 0 0 0 0 0 0 0
...........................................................TATAAAAATTGTATATAAATGGCTT........................................................................ 25 0 20 6.55 131 130 0 0 0 0 0 0 1 0
......................................................................................AAAAATTCATTTGAATTAGAAAGATCAT.......................................... 28 0 20 5.10 102 0 0 42 17 43 0 0 0 0
..........................................................................................ATTCATTTGAATTAGAAAGATCAT.......................................... 24 0 20 4.40 88 26 0 16 25 11 0 3 7 0
..............................................................AAAAATTGTATATAAATGGCTTAT...................................................................... 24 0 20 4.10 82 0 0 82 0 0 0 0 0 0
........................................................................................AAATTCATTTGAATTAGAAAGATCAT.......................................... 26 0 20 3.15 63 11 0 7 5 40 0 0 0 0
............................................................................................TCATTTGAATTAGAAAGATCAT.......................................... 22 0 20 2.05 41 23 9 7 0 2 0 0 0 0
.........................................................ATTATAAAAATTGTATATAAATGGCTT........................................................................ 27 0 20 1.80 36 35 0 0 0 0 1 0 0 0
.............................................................TAAAAATTGTATATAAATGGCTTAT...................................................................... 25 0 20 1.80 36 0 0 0 17 0 0 19 0 0
............................................................ATAAAAATTGTATATAAATGGCTTAT...................................................................... 26 0 20 1.80 36 0 0 36 0 0 0 0 0 0
.......................................................................................AAAATTCATTTGAATTAGAAAGATCAT.......................................... 27 0 20 1.80 36 0 0 5 6 23 0 2 0 0
................................................................................................TTGAATTAGAAAGATCATATAAAAATT................................. 27 0 20 1.45 29 14 13 0 0 2 0 0 0 0
...........................................................TATAAAAATTGTATATAAATGGCT......................................................................... 24 0 20 1.30 26 26 0 0 0 0 0 0 0 0
..CGTGTCACGTTTATGTCAAAAACAAAT............................................................................................................................... 27 1 20 1.20 24 9 6 0 9 0 0 0 0 0
...........................................TCACTAACAGTTGAAT................................................................................................. 16 0 5 1.20 6 0 1 0 2 3 0 0 0 0
.................................................................AATTGTATATAAATGGCTTATAAA................................................................... 24 0 20 1.10 22 0 0 0 0 6 16 0 0 0
....................................................................................ATAAAAATTCATTTGAATTAGAAAGAT............................................. 27 0 20 1.10 22 7 5 9 1 0 0 0 0 0
....................................ATTAAGATCACTAACAGTTGAAT................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................ATATTAAGATCACTAACAGTTGAGT................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................ATATATTAAGATCACTAACAGTTGAAT................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................ATATTAAGATCACTAACAGTTGAATT................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................AAAAATTCATTTGCATTAGAAAGATCAT.......................................... 28 1 20 1.00 20 11 7 2 0 0 0 0 0 0
..................................ATATTAAGATCACTAACAGTTGAA.................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................ATATTAAGATCACTAACAGTTGAATTAT.............................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................AAAAATTGTATATAAATGGCTT........................................................................ 22 0 20 0.95 19 19 0 0 0 0 0 0 0 0
............................................................ATAAAAATTGTATATAAATGGCTTATAAA................................................................... 29 0 20 0.75 15 0 0 15 0 0 0 0 0 0
...............................................................AAAATTGTATATAAATGGCTTATAAA................................................................... 26 0 20 0.75 15 0 14 0 0 0 0 0 1 0
..........................................................ATATAAAAATTGTATATAAATGGCT......................................................................... 25 1 20 0.70 14 13 0 1 0 0 0 0 0 0
............................................................ATAAAAATTGTATATAAATGGCTTATA..................................................................... 27 0 20 0.60 12 11 0 0 0 0 0 0 1 0
...........................................................................................TTCATTTGAATTAGAAAGATCAT.......................................... 23 0 20 0.60 12 0 3 0 0 7 0 2 0 0
................................................................................................TTGAATTAGAAAGATCAT.......................................... 18 0 20 0.55 11 0 0 0 0 11 0 0 0 0
.........................................................ATTATAAAAATTGTATATAAATGGCTTAT...................................................................... 29 0 20 0.50 10 8 0 0 2 0 0 0 0 0
............................................................ATAAAAATTGTATATAAATGGCTTA....................................................................... 25 0 20 0.45 9 0 0 9 0 0 0 0 0 0
...............................................................AAAATTGTATATAAATGGCTT........................................................................ 21 0 20 0.45 9 5 0 0 4 0 0 0 0 0
................................................................................................TTGAATTAGAAAGATCATATAAAAAT.................................. 26 0 20 0.45 9 6 0 0 3 0 0 0 0 0
..........................................................................................ATTCATTTGCATTAGAAAGATCAT.......................................... 24 1 20 0.40 8 5 3 0 0 0 0 0 0 0
....................................................................................ATAAAAATTCATTTGCATTAGAAAGATCAT.......................................... 30 1 20 0.40 8 7 0 0 1 0 0 0 0 0
..............................................................AAAAATTGTATATAAATGGCT......................................................................... 21 0 20 0.40 8 3 5 0 0 0 0 0 0 0
.......................................................................ATATAAATGGCTTATAAAAATTCAT............................................................ 25 0 19 0.37 7 2 3 0 2 0 0 0 0 0
........................................................AATTATAAAAATTGTATATAAATGGCTT........................................................................ 28 0 20 0.35 7 0 6 0 1 0 0 0 0 0
..........................................................TTATAAAAATTGTATATAAATGGCT......................................................................... 25 0 20 0.35 7 0 0 0 7 0 0 0 0 0
.....................................................................................AAAAAATTCATTTGAATTAGAAAGATCAT.......................................... 29 1 20 0.35 7 4 3 0 0 0 0 0 0 0
.............................................................TAAAAATTGTATATAAATGGCT......................................................................... 22 0 20 0.30 6 4 0 2 0 0 0 0 0 0
.............................................................TAAAAATTGTATATAAATGGCTT........................................................................ 23 0 20 0.30 6 0 0 5 0 0 1 0 0 0
..................................................................................................GAATTAGAAAGATCAT.......................................... 16 0 20 0.25 5 0 0 0 0 5 0 0 0 0
.........................................................AGTATAAAAATTGTATATAAATGGCTT........................................................................ 27 1 20 0.25 5 0 3 0 2 0 0 0 0 0
........................................................AATTATAAAAATTGTATATAAATGGCT......................................................................... 27 0 20 0.25 5 0 0 3 2 0 0 0 0 0
......................................................................................AAAAATTCAATTGAATTAGAAAGATCAT.......................................... 28 1 20 0.25 5 0 1 3 1 0 0 0 0 0
...............................................................................................TTTGAATTAGAAAGATCAT.......................................... 19 0 20 0.25 5 0 0 0 0 5 0 0 0 0
..CGTGTCACGTTTATATCAAAAACAAAT............................................................................................................................... 27 0 20 0.25 5 0 4 0 0 0 0 0 1 0
.........................................................................................AATTCATTTGAATTAGAAAGATCAT.......................................... 25 0 20 0.20 4 0 0 0 0 0 4 0 0 0
..................................ATATGAAGATCACTAACAGTTGAAT................................................................................................. 25 1 5 0.20 1 0 0 1 0 0 0 0 0 0
...................................................................TTGTATATAAATGGCTTATAAA................................................................... 22 0 20 0.20 4 0 0 0 0 0 4 0 0 0
............................................................................AATGGCTTATAAAAATTCATTTGAAT...................................................... 26 0 20 0.20 4 0 1 1 2 0 0 0 0 0
.......CACGTTTATATCAAAAACAAATACCAT.......................................................................................................................... 27 0 20 0.20 4 0 0 0 0 0 4 0 0 0
..............................................TTAACAGTTGAATTATAAAAAT........................................................................................ 22 1 5 0.20 1 0 0 1 0 0 0 0 0 0
................................................................................................TTGCATTAGAAAGATCAT.......................................... 18 1 20 0.20 4 0 1 0 0 3 0 0 0 0
..............................................................AAAAATTGTATATAAATGGCTTATAAAAAT................................................................ 30 0 20 0.20 4 0 0 4 0 0 0 0 0 0
...........................................................................AAATGGCTTATAAAAATTCATTTGAATT..................................................... 28 0 20 0.20 4 1 0 1 1 0 0 0 1 0
............................................................ATAAAAATTGTATATAAATGGCTTATAA.................................................................... 28 0 20 0.20 4 0 0 4 0 0 0 0 0 0
........................................AGATCACTAACAGTTGAAT................................................................................................. 19 0 5 0.20 1 0 0 0 0 1 0 0 0 0
.......................................................................................TATATTCATTTGAATTAGAAAGATCAT.......................................... 27 2 20 0.15 3 0 0 0 0 0 0 3 0 0
.......................................................................................AAAATTCATTTGCATTAGAAAGATCAT.......................................... 27 1 20 0.15 3 0 3 0 0 0 0 0 0 0
..........................................................................................ATTCATTTGAATTAGAAAGATCATAT........................................ 26 0 20 0.15 3 1 1 0 1 0 0 0 0 0
...GTGTCACGTTTATGTCAAAAACAAAT............................................................................................................................... 26 1 20 0.15 3 0 0 3 0 0 0 0 0 0
..........................................................ATATAAAAATTGTATATAAATGGCTTA....................................................................... 27 1 20 0.15 3 2 0 1 0 0 0 0 0 0
................................................................................................TTGAATTAGAAAGATGATATAAAAAT.................................. 26 1 20 0.15 3 0 0 0 0 0 3 0 0 0
...........................................................................................TTCATTTGAATTAGAAAGATCATA......................................... 24 0 20 0.15 3 3 0 0 0 0 0 0 0 0
............................................................................................TCATTTGAATTAGAAAGATCATATAA...................................... 26 0 20 0.15 3 0 3 0 0 0 0 0 0 0
.......................................................................................AAAATTCAATTGAATTAGAAAGATCAT.......................................... 27 1 20 0.15 3 2 1 0 0 0 0 0 0 0
...................................................................TTGTATATAAATGGCTTATAAAAAT................................................................ 25 0 20 0.15 3 0 1 0 0 2 0 0 0 0
.......CACGTTTATATCAAAAACAAATACCATAT........................................................................................................................ 29 0 20 0.15 3 2 0 0 0 0 1 0 0 0
......................................................................................................TAGAAAGATGATATAAAAATTAAATAT........................... 27 1 20 0.15 3 0 0 0 0 0 3 0 0 0
.........................................................................................AATTCATTTGAATTAGAAAGATGAT.......................................... 25 1 20 0.15 3 0 0 0 0 0 3 0 0 0
................................................................................................TTGAATTAGAAAGATCATATAAGAATT................................. 27 1 20 0.15 3 2 0 0 1 0 0 0 0 0
......................................................................................AAAAATTCATTTGGATTAGAAAGATCAT.......................................... 28 1 20 0.15 3 0 3 0 0 0 0 0 0 0
.................................................................................................TGAATTAGAAAGATCATATAAAAAT.................................. 25 0 20 0.15 3 1 0 2 0 0 0 0 0 0
.................................................................................................TGAATTAGAAAGATCATATAAAAATT................................. 26 0 20 0.15 3 0 0 3 0 0 0 0 0 0
................................................................................................TTGAATTAGAAAGATCATATAAGAAT.................................. 26 1 20 0.15 3 0 0 0 3 0 0 0 0 0
.........CGTTTATATCAAAAACAAATACCAT.......................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0
.......................................................................................AAAATTCATTTGGATTAGAAAGATCAT.......................................... 27 1 20 0.10 2 0 0 2 0 0 0 0 0 0
.....................................................................................TAAAAATTCATTTGAATTAGAAAGATCAT.......................................... 29 0 20 0.10 2 0 0 0 1 0 0 0 1 0
................................................................AAATTGTATATAAATGGCTTATAAA................................................................... 25 0 20 0.10 2 0 0 2 0 0 0 0 0 0
...........................................................TATAAAAAATGTATATAAATGGCTT........................................................................ 25 1 20 0.10 2 0 0 0 2 0 0 0 0 0
..........................................................ATATAAAAATTGTATATAAATGGCTTATAAA................................................................... 31 1 20 0.10 2 0 0 2 0 0 0 0 0 0
......................................................................................AAAAGTTCATTTGAATTAGAAAGATCAT.......................................... 28 1 20 0.10 2 0 2 0 0 0 0 0 0 0
................................................................................................TTGAATTAGAAAGAT............................................. 15 0 20 0.10 2 1 0 0 0 1 0 0 0 0
............................................................................AATGGCTTATAAAAATTCATTTGAATT..................................................... 27 0 20 0.10 2 0 0 1 1 0 0 0 0 0
..........................................................................AAAATGGCTTATAAAAATTCATTTGAATT..................................................... 29 1 20 0.10 2 0 0 0 2 0 0 0 0 0
..................................................................ATTGTATATAAATGGCTTATAAAAAT................................................................ 26 0 20 0.10 2 0 0 0 0 2 0 0 0 0
..........................................................ATATAAAAATTGTATATAAATGGCTTAT...................................................................... 28 1 20 0.10 2 0 0 0 2 0 0 0 0 0
.........................................................................ATAAATGGCTTATAAA................................................................... 16 0 20 0.10 2 2 0 0 0 0 0 0 0 0
..........................................................CTATAAAAATTGTATATAAATGGCTT........................................................................ 26 1 20 0.10 2 0 0 0 2 0 0 0 0 0
.....GTCACGTTTATATCAAAAACAAAT............................................................................................................................... 24 0 20 0.10 2 0 0 0 0 0 0 0 0 2
................................................................................................TTGAATTAGAAAGATCATATAAAAA................................... 25 0 20 0.10 2 0 1 1 0 0 0 0 0 0
..............................................................................................ATTTGAATTAGAAAGATCAT.......................................... 20 0 20 0.10 2 1 0 0 0 1 0 0 0 0
...................................................................TTGTATATAAATGGCTTATAA.................................................................... 21 0 20 0.10 2 0 0 0 0 2 0 0 0 0
........................................................................................AAATTCATTTGCATTAGAAAGATCAT.......................................... 26 1 20 0.10 2 1 0 0 0 0 1 0 0 0
...........................................................TATAAAAATTGTATATAAATGTCTT........................................................................ 25 1 20 0.10 2 1 0 1 0 0 0 0 0 0
..........................................................ATATAAAAATTGTATATAAATGGCTGAT...................................................................... 28 2 20 0.10 2 0 0 2 0 0 0 0 0 0
..............................................................AAAAATTGTATATAAATGGCTTATA..................................................................... 25 0 20 0.10 2 0 0 0 2 0 0 0 0 0
......................................................................................AAAGATTCATTTGAATTAGAAAGATCAT.......................................... 28 1 20 0.10 2 0 0 2 0 0 0 0 0 0
....................................................................................ATAAAAATTCATTTGGATTAGAAAGATCAT.......................................... 30 1 20 0.10 2 0 0 2 0 0 0 0 0 0
............................................................................................TCATTTGAATTAGAAAGATCATATAAA..................................... 27 0 20 0.10 2 2 0 0 0 0 0 0 0 0
.................................................................AATTGTATATAAATGGCTTAT...................................................................... 21 0 20 0.10 2 0 0 0 2 0 0 0 0 0
..........................................................ATATAAAAATTGTATATAAATGGCTTATA..................................................................... 29 1 20 0.10 2 1 0 1 0 0 0 0 0 0
......................................................................................AAGTATTCATTTGAATTAGAAAGATCAT.......................................... 28 2 20 0.10 2 0 0 0 0 0 0 2 0 0
..................................ATATTAAGATCACCAACAGTTGAAT................................................................................................. 25 1 12 0.08 1 0 1 0 0 0 0 0 0 0
.................................TATATTAAGATCACGAACAGTTGAAT................................................................................................. 26 1 15 0.07 1 0 0 0 0 0 0 1 0 0
..................................ATATTAAGATCACGAACAGTTGAAT................................................................................................. 25 1 15 0.07 1 1 0 0 0 0 0 0 0 0
............................................................................AATGGCTTATAAAAATTCATTTGAATTA.................................................... 28 0 19 0.05 1 0 0 0 1 0 0 0 0 0
.............................................................................ATGGCTTATAAAAATTCATTTGAATT..................................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0
............................................................................AATGGCTTATAAAAATTCATT........................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0
.......CACGTTTATATCAAAAACAAATACCA........................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0
....................................................................................ATAAAAATTCATTTGCATTAGAAAGAT............................................. 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................TTTAAAAATTGTATATAAATGGCTTAT...................................................................... 27 1 20 0.05 1 0 0 0 0 0 0 1 0 0
...............................................................AAAATTGTATATAAATGGCTTAC...................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................AAATGGCTTATAAAA.................................................................. 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.......................................................................................AAAATTCATTTGAATTAGAAAGAT............................................. 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0
............................................................ATAAAAATTGTATATAAATGGGTTA....................................................................... 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0
..........................................................TTATAAAAATTGTATATAAATGGCTTAT...................................................................... 28 0 20 0.05 1 0 0 1 0 0 0 0 0 0
......................................................................................AAAAATTCATTTGAATTAGAAAGATC............................................ 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................AAATGGCTTATAAAAATTCAATTGAATT..................................................... 28 1 20 0.05 1 0 0 0 1 0 0 0 0 0
..CGGGTCACGTTTATGTCAAAAACAAATAC............................................................................................................................. 29 2 20 0.05 1 1 0 0 0 0 0 0 0 0
............................................................................................TCATTTGAATTAGAAAGATCATA......................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0
............................................................ATAAAAATTGTATACAAATGGCTT........................................................................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..........................................................TATTAAAAATTGTATATAAATGGCTT........................................................................ 26 2 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................AAATTCATTTGAATTAGAACGATCAT.......................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0
......................................................................................AAAAATTCATTTGAATTAGAAAGATCGT.......................................... 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0
.......................................................................................AAAATTCATTTGAATTAGAAAGTTCAT.......................................... 27 1 20 0.05 1 0 0 0 0 1 0 0 0 0
............................................................................................TCAATTGAATTAGAAAGATCATATAAA..................................... 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0
......................................................................................AAAAATTCATTTGAATTAGAAAGATCA........................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 1 0
.........................................................................................AATTCATTTAAATTAGAAAGATCAT.......................................... 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0
.....................................................................................TAAAAATTCATTTGAATTAGAAAGATCA........................................... 28 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.....................................................................................TTCAAATTCATTTGAATTAGAAAGATCAT.......................................... 29 2 20 0.05 1 0 0 0 0 1 0 0 0 0
....................................................................................ATAAAAATTCATTTGAATTTGAAAGATCAT.......................................... 30 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.......................................................................................AAAATTAATTTGAATTAGAAAGATCAT.......................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................................................................GAATTAGAAAGATGATATAAAAATT................................. 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0
....................................................................TGTATATAAATGGCTT........................................................................ 16 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..........................................................................................ATTCATTTGAATTAGAAAGATGAT.......................................... 24 1 20 0.05 1 0 0 0 0 0 0 1 0 0
............................................................ATAAAAATTGTATATAAATGGCTTATAAAAAT................................................................ 32 0 20 0.05 1 0 0 1 0 0 0 0 0 0
..............................................................AAAAATTGTACATAAATGGCTTAT...................................................................... 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0
.....................................................................................AAAAAATTCAATTGAATTAGAAAGATCAT.......................................... 29 2 20 0.05 1 0 0 0 0 0 1 0 0 0
......................................................................................AAAAATTCATTTGAA....................................................... 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0
................................................................................................TTGCATTAGAAAGATCATATAAAAAT.................................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................AAAAATTCATTTGAATTAGAAAGAT............................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................AAATTGTATATAAATGGCTT........................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0
....................................................................................ATAAAAATTCATTTGAATTAGAAAGATCATAT........................................ 32 0 20 0.05 1 0 0 1 0 0 0 0 0 0
..............................................................AAAAATTGCATATAAATGGCTTAT...................................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 1 0
........................................................................................AAATTCATTTGAATTAGAAAGATTAT.......................................... 26 1 20 0.05 1 0 0 0 0 0 1 0 0 0
............................................................................................TCATTTGAATTAGAAAGATCATAT........................................ 24 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.......................................................ACATTATAAAAATTGTATATAAATGGCT......................................................................... 28 2 20 0.05 1 0 1 0 0 0 0 0 0 0
................................................................................................TTGAATTAGAAAGATGATATAAAAA................................... 25 1 20 0.05 1 0 0 0 0 0 0 1 0 0
.......................................................................................AAAATTCATTTGAATTA.................................................... 17 0 20 0.05 1 0 0 0 0 1 0 0 0 0
....................................................................................ATAAACATTCATTTGAATTAGAAAGATCAT.......................................... 30 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..CGTGTCACGTTTATATCAAAAACAAATA.............................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................ATATTCATTTGAATTAGAAAGATCAT.......................................... 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0
........ACGTTTATATCAAAAACAAATACCATAT........................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................AAAAATTGTATATAAACGGCTTATAAAAAT................................................................ 30 1 20 0.05 1 0 0 0 1 0 0 0 0 0
........................................................................................AAATTCATTTGAATTAGAAAGAT............................................. 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0
................................................................................................TTGAATTAGAAAGATGATATAAAAATT................................. 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0
..CGTGTGACGTTTATATCAAAAACAAAT............................................................................................................................... 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0
.....................................................ATGAATTATAAAAATTGTATATAAATGGCT......................................................................... 30 1 20 0.05 1 0 0 1 0 0 0 0 0 0
.........................................................................ATAAATGGCTTATAAAAATTCATTTGAATT..................................................... 30 0 20 0.05 1 0 0 0 1 0 0 0 0 0
..............................................................AAAAATTGTATATAAAGGGCTT........................................................................ 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0
............................................................ATAAAAAATGTATATAAATGGCTTATAAA................................................................... 29 1 20 0.05 1 0 0 0 1 0 0 0 0 0
............................................................................................TCATTTGAATTAGAAAGATGATATAA...................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.......................................................GAATTATAAAAATTGTATATAAATGGCTT........................................................................ 29 0 20 0.05 1 0 0 0 1 0 0 0 0 0
..........................................................................................ATTCATTTGAATTAGAAAGATCATA......................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 1 0
.................................................................................................TGCATTAGAAAGATCATATAAAAAT.................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................................................ATAAAAATTCATTTGAGTTAGAAAGATCAT.......................................... 30 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................AAAAATTGTACATAAATGGCTTATAAA................................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................AAATTCAATTGAATTAGAAAGATCAT.......................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0
....................................................................................ATAAAAATTCATTTGAATTATAAAGATCAT.......................................... 30 1 20 0.05 1 0 0 1 0 0 0 0 0 0
.............................................................................................CATTTGAATTAGAAAGATCATA......................................... 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0
........................................................................................AAATTCATTTGGATTAGAAAGATCAT.......................................... 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0
............................................................................................TCGTTTGAATTAGAAAGATCAT.......................................... 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0
....................................................................................ATAAAGATTCATTTGAATTAGAAAGATCAT.......................................... 30 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.................................................ACAGTTGAATTATAAAAATTGTATATA................................................................................ 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0
...............................................................AAAATTGTATATAAATGGCT......................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...............................................................................................TTTGGATTAGAAAGATCATAT........................................ 21 1 20 0.05 1 0 0 1 0 0 0 0 0 0
.....................................................................................TAAAAATTCATTTGGATTAGAAAGATCAT.......................................... 29 1 20 0.05 1 0 0 1 0 0 0 0 0 0
..........................................................................................ATTCATTTGAATTAGAAACATCAT.......................................... 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.......................................................................................................AGAAAGATGATATAAAAATTAAATAT........................... 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0
.......................................................................ATATAAATGGCTTATAAAAA................................................................. 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0
...............................................................................................TTTGAATTAGAAAGATGATATAAAAATT................................. 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.............................................................CAAAAATTGTATATAAATGGCTT........................................................................ 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................................................AAAATTTGTATATAAATGGCTTATAAA................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0
....................................................................................ATAAAAATTCATTTGAATTAGAAAGATCGT.......................................... 30 1 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................AAAAATTCATTTGAATTAGGAAGATCAT.......................................... 28 1 20 0.05 1 0 0 0 1 0 0 0 0 0
..............................................................AAAAATTGTATATAAATGGCTTA....................................................................... 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0
..........................................................................................ATTCAGTTGAATTAGAAAGATCAT.......................................... 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0
....................................................................................ATAAAAATTCATTTAAATTAGAAAGATCAT.......................................... 30 1 20 0.05 1 0 0 1 0 0 0 0 0 0
..........GTTTATATCAAAAACAAATACCATAT........................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0
......................................................................................AAAAATACATTTGAATTAGACAGATCAT.......................................... 28 2 20 0.05 1 0 0 0 1 0 0 0 0 0
................................................................................................TTGAATTAGAAAGATCATATAAGAG................................... 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0
..........................................................................................ATTCATTTGAATTAGAAAGATCA........................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0
................................................................AAATTGTATATAAATGGCTTATAAAAAT................................................................ 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.................................................................................................TGAATTAGAAAGATCATATAAAAATTAAAT............................. 30 0 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................AAATTCATTTGAATTAGGAAGATCAT.......................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0
GCCGTGTCACGTTTATATCAAAAACAAAT............................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................AAAAATTGTTTATAAATGGCT......................................................................... 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0
................................................................................................TTGAATTAGAAAGATCATATAAAAATTA................................ 28 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.............................................................CAAAAATTGTATATAAATGGCTTAT...................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0
GCCGTGTCACGTTTATGTCAAAAACAA................................................................................................................................. 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.................................................................................................TGAATTAGAAAGATCAT.......................................... 17 0 20 0.05 1 0 0 1 0 0 0 0 0 0
......................................................................................AAAAATTCATTTGAATTAGTAAGATCAT.......................................... 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..........................................................................TAAATGGCTTATAAAAAT................................................................ 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.........................................................................ATAAATGGCTTATAAAAATTCATTTGAAT...................................................... 29 0 20 0.05 1 0 0 1 0 0 0 0 0 0
........................................................................................AAATTAATTTGAATTAGAAAGATCAT.......................................... 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0
...............................................................CAAAATGTATATAAATGGCTTAT...................................................................... 23 2 20 0.05 1 0 0 0 0 0 0 0 0 1
...........................................................TTTAAAAATTGTATATAAATGGCT......................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.................TCAAAAACAAATACCATAT........................................................................................................................ 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.......................................................CAAATATAAAAATTGTATATAAATGGCTT........................................................................ 29 2 20 0.05 1 0 0 1 0 0 0 0 0 0
...........................................................TATAAAAATTGTATCTAAATGGCTT........................................................................ 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................TTCATTTGAATTAGAAAG............................................... 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.....GTCACGTTTATATCAAAAACAAATACC............................................................................................................................ 27 0 20 0.05 1 0 0 0 0 0 0 0 0 1
........................................................................................AAATTCATTTGAATTAGAGAGATCAT.......................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0
..........................................................................TAAATGGCTTATAAA................................................................... 15 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.......................................................................................................AGAAAGATCATATAAAAATTAAATATT.......................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................TTCATTTGCATTAGAAAGATCAT.......................................... 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:13735547-13735702 - dsi_191 CGGCACAGTGCAAATATAGTTTTTGTTT-ATG--------------------------------------------------------------------------------------------------------------------GTATATAATTCTAGTGATTGTCAACTTAATATTTTTAACATA--TATTTACCGAATAT-----------------------------TTTTA-AGT----------AAACTTAATCTTTCTAGTATATTTTT--AATT-TATAATTTTTGATAATTTTATATATAATGTT
droSec2 scaffold_442:658-813 + CGGCACAGTGCAAATATAGTTTTTGTTT-CTA--------------------------------------------------------------------------------------------------------------------GTATATATTTCTAGTGTTTGTCAACTTAATATTTTTAACATA--TATTTACCGAATAT-----------------------------TTTTA-AGT----------AAACTTAATCTTTCTAGTATATTTTT--AATT-TATAATATTTGATAATTTTATATATAATGTT
dm3 chrX:6059673-6059841 - CGGCACGGTGCAAATATAGTTTTTGTTC-CTA--------------------------------------------------------------------------------------------------------------------GTAAATATTTGTAGTATTTATCAACTTAATATTTTTAATATAGAAATATACCAAATAT-----------------------------TTTTA--GTATATACCTACATACTTTATCTTTCTAGTATATTTTTATAATT-TAAATTTTTTTTCATTTTTTTATATAATCAT
droEre2 scaffold_3710:631-775 + ATAAA-------------ATGTTTATTTGTTAGTAAATTTTAATAGAATTTAAACATTTCCAATCTGTTTAAAATATGCGCATTTGCAGATTATAACCTAAAG----------------------------------------------------------------------------------CTATT--CATTTAGTCACTAT-----------------------------TTTTT--TTATATTAAT----GTAA-----------------------------------------AGAATACAAAATTTAAT
droYak3 X:2070021-2070206 - CGGCAAGTTGAAAATATACCTAATAGTT-CTG----------------------------------------------------GTATTT-----ATATACTAAATAGTGAAAGTGCTAATATACTGAACAGTGCTAGTTTTTATATACTATATAGTGCTAGTTTTTATATACTAAATAGTTTTAGTATT--TATATACCAAATAT-----------------------------TTCTA--GTATATAAAT----ACTAAAAATTTCTTGTATAT-------------------------------------ATGTT
droEle1 scf7180000490141:783599-783603 - CAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000778072:260303-260447 - AGCATGAATCGAATGATTATT----------A--------------------------------------------------------------------------------------------------------------------TTGAAAAGCTGCAGTGAT---------------------------------CTTATTGGCTTTATCAGTATAATCTTTGGTAAAGATTTTTGTGAT----------AGATTTGTAATTACTTTAATATTGTT--TATT-TAAGATCTT-AGAAATGTAATAAATTAAGTT
droAna3 scaffold_12916:11452099-11452241 - CCGAAAATTGAAAATAAAATATTTTTTT-TTT----------------------------------GTGTTAATTTTGTTTCTTGTTTTTTCAATGTTTATTG-----------------------------------------------------------------------------TTTTTTGTTG-------------------TTGTTATTGTACTGTTTGTTGTACAT-----------------------------------------ATTT--TGTTGTAT-TTTTTTTGTAATTTTTTTTTTTTAATT
droBip1 scf7180000395520:28767-28925 - CTGAAAACTCGGGTTTTTATGTTTATTT-GTT----------------------------------TTT-------------------------------------------------------------------------------GTAATTAGTTTTTGTTGTTGTAATATGATTGTTGTTGTAATT--TTTTGTTGTTGTAATTTTTGTTGTTGTAATTTTTGTTGTAATT-----------------------------------------TTTT--TTTGGTATTTTTTGTTGTAATTTTTTTTCTAGTATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGGCACAGTGCAAATATAGTTTTTGTTT-ATG--------------------------------------------------------------------------------------------------------------------GTATATAATTCTAGTGATTGTCAACTTAATATTTTTAACATA--TATTTACCGAATAT-----------------------------TTTTA-AGT----------AAACTTAATCTTTCTAGTATATTTTT--AATT-TATAATTTTTGATAATTTTATATATAATGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................TTACCGAATAT-----------------------------TTTTA-AGT----------AAAC............................................................23205.401080000108000000000000
..............TATAGTTTTTGTTT-ATG--------------------------------------------------------------------------------------------------------------------GTATATAA..................................................................................................................................................................2511.00100000000100000000
............AATATAGTTTTTGTTT-ATG--------------------------------------------------------------------------------------------------------------------GTATATAA..................................................................................................................................................................2711.00100000000000010000
.................................................................................................................................................................GTGATTGTCAACTTAATATTTTTAACA..................................................................................................................................2740.25100000001000000000
................................................................................................................................................................AGTGATTGTCAACTTAATATTTTTAACATA--..............................................................................................................................3040.25100000010000000000
....................................................................................................................................................................................................TACCGAATAT-----------------------------TTTTA-AGT----------AAACTT..........................................................24200.15300010010010000000
.............................................................................................................................................................................................................................................TTA-AGT----------AAACTTAATCTTTCTAGTATA...........................................27200.15300000001200000000
......................................................................................................................................................................................................CCGAATAT-----------------------------TTTTA-AGT----------AAACTTAAT.......................................................25200.10200000001001000000
..............................................................................................................................................................................................................................................TA-AGT----------AAACTTAATCTTTCTAGTA.............................................24200.10200000002000000000
......................................................................................................................................................................................................CCGAATAT-----------------------------TTTTA-AGT----------AAACTTAATC......................................................26200.05100000001000000000
....................................................................................................................................................................................................TACCGAATAT-----------------------------TTTTA-AGT----------AAACT...........................................................23200.05100000000010000000
................................................................................................................................................................................................TATTTACCGAATAT-----------------------------TTTTA-AGT----------AAACT...........................................................27200.05100000000100000000
......AGTGCAAATATAGTTTTTGTTT-ATG--------------------------------------------------------------------------------------------------------------------GTA.......................................................................................................................................................................28200.05100010000000000000
..............................................................................................................................................................................................................................................TA-AGT----------AAACTTAATCTTTCTAGTATA...........................................26200.05100000000100000000
..................................................................................................................................................................................................TTTACCGAATAT-----------------------------TTTTA-AGT----------A...............................................................21200.05100000001000000000
............AATATAGTTTTTGTTT-ATG--------------------------------------------------------------------------------------------------------------------GTATATA...................................................................................................................................................................26200.05100000001000000000
......................................................................................................................................................................................................................................................................................................TTTGATAATTTTATATATAATGTT24200.05100000000001000000
..................................................................................................................................................................................................TTTACCGAATAT-----------------------------TTTTA-AGT----------AAACT...........................................................25200.05100000000100000000
............AATATAGTTTTTGTTT-ATG--------------------------------------------------------------------------------------------------------------------G.........................................................................................................................................................................20200.05100000000001000000
.......................................................................................................................................................................................................................................................................CTTTCTAGTATATTTTT--AATT-TA.............................23200.05100000000100000000
........TGCAAATATAGTTTTTGTTT-ATG--------------------------------------------------------------------------------------------------------------------GTA.......................................................................................................................................................................26200.05100000000010000000
..............TATAGTTTTTGTTT-AT...............................................................................................................................................................................................................................................................................................16200.05100000000010000000
......................................................................................................................................................................TGTCAACTTAATATTTTTAACAA.................................................................................................................................23200.05100001000000000000
......................................................................................................................................................................TGTCAACTTAATATTTTTAACATA--TATT..........................................................................................................................28200.05100000000010000000
......................................................................................................................................................................................................CCGAATAT-----------------------------TTTTA-AGT----------AAACTTAATA......................................................26200.05100000001000000000
droSec2
CGGCACAGTGCAAATATAGTTTTTGTTT-CTA--------------------------------------------------------------------------------------------------------------------GTATATATTTCTAGTGTTTGTCAACTTAATATTTTTAACATA--TATTTACCGAATAT-----------------------------TTTTA-AGT----------AAACTTAATCTTTCTAGTATATTTTT--AATT-TATAATATTTGATAATTTTATATATAATGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................TA--------------------------------------------------------------------------------------------------------------------GTATATATTTCTAGTGTTTGTCA...................................................................................................................................................25200.0511000
dm3
CGGCACGGTGCAAATATAGTTTTTGTTC-CTA--------------------------------------------------------------------------------------------------------------------GTAAATATTTGTAGTATTTATCAACTTAATATTTTTAATATAGAAATATACCAAATAT-----------------------------TTTTA--GTATATACCTACATACTTTATCTTTCTAGTATATTTTTATAATT-TAAATTTTTTTTCATTTTTTTATATAATCATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................ATTTTTATAATT-TAAATT.........................1812.0020000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AGTTTTTGTTC-CTA--------------------------------------------------------------------------------------------------------------------GTAAATA...................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATATAGTTTTTGTTC-CTA--------------------------------------------------------------------------------------------------------------------G.........................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AGTTTTTGTTC-CTA--------------------------------------------------------------------------------------------------------------------GTAAATATTT................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CTA--------------------------------------------------------------------------------------------------------------------GTAAATATTTGTAG............................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GTATATACCTACATACTT..........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATATAGTTTTTGTTC-CTA--------------------------------------------------------------------------------------------------------------------GT........................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................ATTTGTAGTATTTATCAACTT...............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TTTTCATTTTTTTATATAAC...2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................ATTTTTTTATATAATCT.17200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATAAA-------------ATGTTTATTTGTTAGTAAATTTTAATAGAATTTAAACATTTCCAATCTGTTTAAAATATGCGCATTTGCAGATTATAACCTAAAG----------------------------------------------------------------------------------CTATT--CATTTAGTCACTAT-----------------------------TTTTT--TTATATTAAT----GTAA-----------------------------------------AGAATACAAAATTTAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CGGCAAGTTGAAAATATACCTAATAGTT-CTG----------------------------------------------------GTATTT-----ATATACTAAATAGTGAAAGTGCTAATATACTGAACAGTGCTAGTTTTTATATACTATATAGTGCTAGTTTTTATATACTAAATAGTTTTAGTATT--TATATACCAAATAT-----------------------------TTCTA--GTATATAAAT----ACTAAAAATTTCTTGTATAT-------------------------------------ATGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEle1
CAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGCATGAATCGAATGATTATT----------A--------------------------------------------------------------------------------------------------------------------TTGAAAAGCTGCAGTGAT---------------------------------CTTATTGGCTTTATCAGTATAATCTTTGGTAAAGATTTTTGTGAT----------AGATTTGTAATTACTTTAATATTGTT--TATT-TAAGATCTT-AGAAATGTAATAAATTAAGTTSizeHit CountTotal NormTotal
No Reads
droAna3
CCGAAAATTGAAAATAAAATATTTTTTT-TTT----------------------------------GTGTTAATTTTGTTTCTTGTTTTTTCAATGTTTATTG-----------------------------------------------------------------------------TTTTTTGTTG-------------------TTGTTATTGTACTGTTTGTTGTACAT-----------------------------------------ATTT--TGTTGTAT-TTTTTTTGTAATTTTTTTTTTTTAATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CTGAAAACTCGGGTTTTTATGTTTATTT-GTT----------------------------------TTT-------------------------------------------------------------------------------GTAATTAGTTTTTGTTGTTGTAATATGATTGTTGTTGTAATT--TTTTGTTGTTGTAATTTTTGTTGTTGTAATTTTTGTTGTAATT-----------------------------------------TTTT--TTTGGTATTTTTTGTTGTAATTTTTTTTCTAGTATTSizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 03:17 PM