dsi_19094

Name	Class	Family	Strand
R1_DYa	LINE	R1	-

AGCATCCCCAGTCGCAGTCGCCGCACCAGCAGCAGCAGTCGCAGCAGCAGGCCGCCGCAGCAGCCGCCGCTGCAGCCGCAGCAGCCCACCATCAGCAGCAGCAGGCGGTGGCCGCCGCAGTCTGTGCCGCCCAGCAGCAGGCGGTGGTGGTGCAGCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCCAAAGAATCAG ************************************************((.((.((.(((((....))))).)).)).))..................((..((((((((.((.((.((..((((((((........)))))(((((.(((.((....)).))).)))))....)))..)).)).)).)))))))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	O001 Testis	SRR618934 dsim w501 ovaries	M053 female body	M024 male body	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo
...........................................................GCAGCCGCCGCTGCAGCCGC............................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0
..........GTCGCAGTCGCCGCACCAGCAGC..........................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................GTGGTGGCGCAGCGGCAGCAG.......................................................................................	21	2	7	0.14	1	0	0	0	1	0	0	0
......................TCACCAGCAGCAGCAGTCGCTTCA.............................................................................................................................................................................................................	24	3	7	0.14	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................AGCAGAAGGTGCTCT...................................	15	1	17	0.12	2	0	0	2	0	0	0	0
.....................................................................................................................................................................................GCAGTAGCAGTCGACGCGGCA.................................................	21	3	20	0.10	2	1	0	0	0	1	0	0
..........................CAGCAGCAGCAGTCGCA................................................................................................................................................................................................................	17	0	20	0.05	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................AAACAGGGTAAGCAAAAG......	18	2	20	0.05	1	0	0	0	0	0	0	1

TCGTAGGGGTCAGCGTCAGCGGCGTGGTCGTCGTCGTCAGCGTCGTCGTCCGGCGGCGTCGTCGGCGGCGACGTCGGCGTCGTCGGGTGGTAGTCGTCGTCGTCCGCCACCGGCGGCGTCAGACACGGCGGGTCGTCGTCCGCCACCACCACGTCGTCGTCGTCGTCATGGTCTAGGTGAGCGTCGTCGTCAGCGGCGTCGTCGTCGTCCACGAGACGTAGAGCGGGTTCGTCCCATTCGGTTTCTTAGTC ************************************************((.((.((.(((((....))))).)).)).))..................((..((((((((.((.((.((..((((((((........)))))(((((.(((.((....)).))).)))))....)))..)).)).)).)))))))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	O001 Testis	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR618934 dsim w501 ovaries
...........................................................................................................................................................................................................................AGAGCGGGTTCGTGCGA...............	17	2	8	2.88	23	9	8	4	0	1	1	0
...........................................................................................................................................................................................................................AGAGCGGGTTCGTGC.................	15	1	4	2.75	11	4	2	3	0	2	0	0
...........................................................................................................................................................................................................................AGAGCGGGTTCGTGCG................	16	2	20	1.40	28	17	5	5	0	1	0	0
.........................................................................................................................................................................................................................ATAGAGTGGGTTCGTCCCATTGG...........	23	3	1	1.00	1	1	0	0	0	0	0	0
.................................................................CGGCGACGTCGGCGTCGT........................................................................................................................................................................	18	0	2	1.00	2	0	0	0	2	0	0	0
.........................................................................................................................................................TCATAGTCGTCGTCATGGTCT.............................................................................	21	2	2	0.50	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................AGAGCGGGTTCGTGCGAAT.............	19	3	9	0.44	4	4	0	0	0	0	0	0
.........................................................................................................................................................TCCTCGACGTCGTCATGGTCT.............................................................................	21	2	6	0.17	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................GGAGAGCGGGTTCGT...................	15	1	9	0.11	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGAGCGGGTTCGTGCA................	16	2	20	0.10	2	1	1	0	0	0	0	0
.....................................................................................................................................................CAAGTCGTCCTGGTCGTCAT..................................................................................	20	3	20	0.10	2	0	2	0	0	0	0	0
........................................................................GTCGTCGTCGTCGGGTGGT................................................................................................................................................................	19	1	13	0.08	1	0	0	0	0	0	0	1
.......................................................................................................................................................................ATGGTCTAGCTAAGCGT...................................................................	17	2	17	0.06	1	0	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:23274065-23274315 +	dsi_19094	AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAGCAGCAGGCCG---CCGCAGCAGCCGCCG---CTGCAGCCGCA------GCAGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCCGCAGTCTGTGCCGCCCAGCAGCAGGCGGTGGTGGTGCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCCAAAGAA--------------------------------------------------------------------------------------------TCAG------------------------------
droSec2	scaffold_22:497817-498070 +		AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCATCAG------------------CAGCAGCAGTCGCAGCAGCAGGTCG---CCGCAGCAGCCGCCG---CTGCAGCCGCA------GCAGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCAGCAGTCTGTGCCGCCCAGCAGCAGGCGGTGGTGGTGCAGCA---------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATATCGCCCAAGCAGGGTAAGCCAAAGAA--------------------------------------------------------------------------------------------TCAG------------------------------
dm3	chr3R:23875789-23876045 +		AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAGCAGCAGGCCG---CCGCAGCAGCCGCCG---CTGCAGCCGCA------GCAGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCAGCAGTCTGTGCTGCCCAGCAGCAGGCGGTGGTGGTGCAGCAG------------------------------------------------------CAGCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCCAAAGAA--------------------------------------------------------------------------------------------ACAG------------------------------
droEre2	scaffold_4820:4164665-4164924 -		AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAGCAGCAGGCCG---CCGCAGCAGCCGCCGCCGCTGCAGCCGCA------GCAGCCCACCATCAGCAGCAGCAG---------GCCGTGGCCGCAGCAGTCTGTGCCGCCCAGCAGCAGGCAGTGGTGGTGCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCTAAAGAA--------------------------------------------------------------------------------------------TCAGCATACT------------------------
droYak3	3R:22617500-22617781 -		AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCATCAG------------------CAGCAGCAGTCGCAACAGCAGGCCG---CCGCAGCAGCAGCCG---CTGCAGCCGCA------GCAGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCAGCAGTCTGTGCTGCCCAGCAGCAGGCAGTGGTGGTGCAACA---------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCTTAAGAA--------------------------------------------------------------------------------------------ACAG--TACTATAAAGTTACTATATAAGAACTTT
droEug1	scf7180000409787:1722079-1722326 -		AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCATCAG------------------CAGCAGCAATCGCAGCAGCAGGCTG---CCGCAGCAGCCGCCG---CTGCAGCTGCA------GCAGCCCACCATCAGCAGCAGCAA---------GCTGTGGCCGCTGCCGTCTGTGCCGCCCAGCAACAAGCTGTGGTTGTGCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTCTGCATCTCGCCTAAGCAGGGTAAGCTAAAGAA--------------------------------------------------------------------------------------------TCAG------------------------------
droBia1	scf7180000302075:2933639-2933895 -		AGCAGCATCAG------------------------------CACCCCCAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAGCAGCAGGCCG---CCGCAGCAGCCGCCG---CTGCCGCCGCC------GCCGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCCGCCGTCTGCGCCGCCCAGCAGCAGGCGGTGGTGGTGCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCCTAAGAC--------------------------------------------------------------------------------------------TCAA------------------------------
droTak1	scf7180000414670:52222-52475 -		AGCAGCAGCAG------------------------------CATCCCCAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAACAGCAGGCCG---CCGCAGCTGCCGCCG---CTGCAGCCGCA------GCCGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCCGCCGTCTGTGCCGCCCAGCAGCAGGCGGTGGTGGTGCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCTAAGAAA--------------------------------------------------------------------------------------------T---------------------------------
droEle1	scf7180000491280:4136295-4136557 -		AG---------------------------------------CATCCGCAGTCGCAGTCGCCGCATCAGCATCAGC---------ATCAGCAGCAGTCGCAGCAACAGGCCG---CCGCAGCAGCCGCCG---CTGCAGCCGCA------GCAGCTCACCACCAGCAGCAGCAG---------GCGGTGGCCGCCGCCGTCTGTGCCGCCCAACAACAAGCGGTGGTGGTGCAGCAG------------------------------------------------------CAGCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCCAAAGAA--------------------------------------------------------------------------------------------TCAG------------------------------
droRho1	scf7180000779538:372817-373069 -		-G---------------------------------------CACACACAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAGCAACAGGCCG---CCGCAGCAGCCGCCG---CTGCAGCCGCC------GCAGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCCGCCGTCTGTGCCGCCCAGCAGCAGGCGGTGGTGGTGCAGCAG------------------------------------------------------CAGCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCTTAAGAA--------------------------------------------------------------------------------------------TCAG------------------------------
droFic1	scf7180000453826:57154-57402 -		AG---------------------------------------CACCCCCAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAGCAACAGGCCG---CCGCAGCCGCCGCAGCCGCCGCCGCCGCAGCAGCGGCCGCCCACCACCAGCAGCAGCAG---------GCCGTCGCCGCCGCCGTCTGCGCCGCCCAGCAGCAGGCCGTGGTGGTGCAGCA---------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGC-------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302475:944451-944700 -		AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCACCAG------------------C---AGCAGTCTCAGCAGCAGGCCG---CTGCTGCCGCCGCCGCAGCAGCCGCTGCA------GCTGCCCATCACCAGCAGCAGCAG---------GCGGTGGCTGCCGCCGTCTGTGCCGCCCAGCAGCAGGCGGTAGTGGTGCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTTAGCATCTCTCCCAAGCAGGGTAAGCAAAGGAA------------------------------------------TT------------------------------------------------TTGA------------------------------
droAna3	scaffold_13340:22021248-22021553 +		AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCACCAG------------------C---AGCAGTCGCAGCAGCAGGCTG---CCGCTGCAGCCGCCG---CAGCTGCTGCT------GCCGCCCACCACCAGCAACAGCAG---------GCAGTGGCCGCCGCCGTCTGCGCCGCCCAACAACAGGCAGTGGTCGTCCA------------------------------------------------------------GCAGCAGCAGCAATACCAGATCCACTCGCAGCAGCAATCGCCGCAGC---AGCAGGTGCTCAGCGTTTCCCCCAAGCAGGGTAAGTTCTGAAAAAAAAAAACTCTCCAAAGACAAGACTATAT-------------------TAAATTCTCCGGAATTATTAATTTCATTAAA------------TTAA------------------------------
droBip1	scf7180000396583:162773-163092 -		A------------------------------------------TCCCCAGTCGCAGTCGCCACACCAGCAC---------------CAGCAGCAGTCGCAGCAGCAGGCCG---CCGCTGCAGCCGCCG---CAGCCGCTGCT------GCCGCCCACCACCAGCAACAACAG---------GCCGTGGCCGCCGCCGTCTGCGCCGCCCAACAACAGGCAGTGGTCGTCCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAATCGCCGCAGC---AGCAGGTGCTCAGCGTTTCCCCCAAACAGGGTAAGTTC--------------TCTACAAAG------CTCTATAATGAAGACCAGTCTTAAATAAACTCTCCCTAATTAGTAATCTCATTAAATTAACCAAAAAGTAAA------------------------------
dp5	2:8206318-8206570 -		AG---------------------------------------CATCCCCAGTCGCAGTCGCCACACCTGCAGCAGCAGCACTCGCAGCAGCAGCACTCGCAACAGCAGGCCGTGGCTGCAGCAGCCGCCG---CTGCC------------GCCGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCCGCCGTCTGTGCCGCCCAGCAGCAGGCGGTGGTCGTCCAG---------------------------------------------------------------CAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCCCAGC---AGCAGGTGCTCAGCATCTCGCCCAAGCAGGGTAAGCCAAA---------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_0:2042337-2042589 -		AG---------------------------------------CATCCCCAGTCGCAGTCGCCACACCTGCAGCAGCAGCACTCGCAGCAGCAGCACTCGCAACAGCAGGCCGTGGCCGCAGCAGCCGCCG---CTGCC------------GCCGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCCGCCGTCTGTGCCGCCCAGCAGCAGGCGGTGGTCGTCCAG---------------------------------------------------------------CAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCCCAGC---AGCAGGTGCTCAGCATCTCGCCCAAGCAGGGTAAGCCAAA---------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004921:1103716-1103995 +		AGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCACTCGCATTCGCAATCGCAGTCACCGCACCAA------------------CAGCAGCAATCGCAG---CAAGCCG---CTGCAGTGGCAGCAGCAGCAGCTGCAGCA------GCTGCTCACCATCAGCAGCAACAG---------GCCGTGGCCGCTGCAGTCTGTGCTGCTCAGCAGCAGGCAGTTGTCGTTCAGCA---------------------------------------------------------GCAGCAGCAGCAATATCAAATCCATTCGCAGCAGCAATCACCTCAGC---AGCAGATCCTGAGCATTTCTCCCAAGCAGGGTAAGTC------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13047:15688427-15688697 -		-------------------------------------------TCCACAGTCCCAGTCGCCGCATCAG------------------C---AGCAGTCGCAGCAGCAAGCGG---TCGCTGCAGCCGCTGCAGCTGCAGCAGCA------GCAGCTCATCATCAGCAGCAGCAACAA---GCTGCTGTCGCCGCGGCCGTTTGTGCCGCTCAGCAGCAGGCGGTGGCCGTTCAACAACAACAGCAGCAAC------------------------------------AACAGCAGCAGCAGCAGCAATACCAAATCCACTCGCAACAGCAGTCGCCGCA------GCAGGTGCTCAGCGTTTCGCCCAAGCAGGGTAAGCAAAAGAT--------------------------------------------------------------------------------------------TTAA------------------------------
droMoj3	scaffold_6424:6104-6404 +		-------------------------------------------TCCGCAGTCCCAGTCGCCGCATCAG------------------C---AGCAGTCGCAGCAGCAGGCAG---TCGCAGCAGCAGCAGCAGCCGCCGCCGCA------GCTGCTCATCATCAGCAGCAGCAGCAA---GCAGCCGTGGCCGCTGCCGTCTGTGCCGCCCAGCAGCAGGCGGTGGCCGTGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACAGCAGCAGCAACAGCAGCATTACCAAATTCACTCGCAGCAACAGTCGCCGCA------GCAGGTGCTTAGCGTATCGCCCAAGCAGGGTAAG------AA--------------------------------------------------------------------------------------------TCAC------------------------------
droGri2	scaffold_14830:4315943-4316222 +		AG---------------------------------------CATCCACAGTCTCAGTCGCCCCATCAG---------------------CAGCAGTCGCAGCAACAGGCTG---TGGCAGCCGCTGCAGCAGCTGCCGCAGCA------GCCGCTCATCATCAACAGCAGCAACAACAGGCCGCCGTTGCCGCTGCCGTCTGTGCCGCCCAGCAGCAGGCCGTTGCCGTGCAACAGCAACAGCAGCAGCA------------------GCAGCAGCACC------AACAGCAGCAACAGCAACAATACCAAATCCACTCGCAGCAACAGTCGCCGCA------GCAGGTGCTCAGCATTTCGCCCAAGCAGGGTAAGCA------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAGCAGCAGGCCG---CCGCAGCAGCCGCCG---CTGCAGCCGCA------GCAGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCCGCAGTCTGTGCCGCCCAGCAGCAGGCGGTGGTGGTGCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCCAAAGAA--------------------------------------------------------------------------------------------TCAG------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................GCAGCCGCCG---CTGCAGCCGC.................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GTCGCAGTCGCCGCACCAG------------------CAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................CAG------------------CAGCAGCAGTCGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCATCAG------------------CAGCAGCAGTCGCAGCAGCAGGTCG---CCGCAGCAGCCGCCG---CTGCAGCCGCA------GCAGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCAGCAGTCTGTGCCGCCCAGCAGCAGGCGGTGGTGGTGCAGCA---------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATATCGCCCAAGCAGGGTAAGCCAAAGAA--------------------------------------------------------------------------------------------TCAG------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................CAGCAGCCGCCG---CTGCAGCCGCA------GCA.......................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
........................................................................................GCAGCAGTCGCAGCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................	19	14	0.07	1	0	0	0	1
.......................................................................................AGCAGCAGTCGCAGCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................	20	14	0.07	1	0	0	0	1
..................................................................AG------------------CAGCAGCAGTCGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................	18	18	0.06	1	0	0	1	0

dm3

AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAGCAGCAGGCCG---CCGCAGCAGCCGCCG---CTGCAGCCGCA------GCAGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCAGCAGTCTGTGCTGCCCAGCAGCAGGCGGTGGTGGTGCAGCAG------------------------------------------------------CAGCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCCAAAGAA--------------------------------------------------------------------------------------------ACAG------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................CAGCAGCAG---------GCGGTGGCCGCA.............................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CAGCAGCAG---------GCGGTGGCCGCAGC...........................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CAGCAGCAG---------GCGGTGGCCGT..............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CAGCAGCAG---------GCGGTGGCCG...............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................CTGCCCAGCAGCAGGCGGTGGTGGT..........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................ACCAGATCCACTCGCAGCAGCAGTC....................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................CAGTCGCCGCACCAG------------------CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGTCGCCGCAGCAGCAGCAGGTGCTC..............................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................G------------------CAGCAGCAGTCGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................G------------------CAGCAGCAGTCGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................	20	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................CAG------------------CAGCAGCAGTCGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................	19	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................CAG------------------CAGCAGCAGTCGCAGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GTGCAGCAG------------------------------------------------------CAGCAGCAGCAG.................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................G------------------------------------------------------CAGCAGCAGCAGCAGTA............................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GCAGCAG------------------------------------------------------CAGCAGCAGCAGCA...............................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CAGCAG------------------------------------------------------CAGCAGCAGCAGC................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAGCAGCAGGCCG---CCGCAGCAGCCGCCGCCGCTGCAGCCGCA------GCAGCCCACCATCAGCAGCAGCAG---------GCCGTGGCCGCAGCAGTCTGTGCCGCCCAGCAGCAGGCAGTGGTGGTGCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCTAAAGAA--------------------------------------------------------------------------------------------TCAGCATACT------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................GCAGCAGTCGCAGCAGCAGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.........................................CATCCCCAGTCGCAGTCGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTGCTCTGCATCTCGCCCAAGCAGGA..........................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................CATCAGCAGCAGCAG---------GCCGTGGCC................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...................................................................G------------------CAGCAGCAGTCGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	0	0	0	0	1	0
..................................................................AG------------------CAGCAGCAGTCGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	0	0	1	0

droYak3

AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCATCAG------------------CAGCAGCAGTCGCAACAGCAGGCCG---CCGCAGCAGCAGCCG---CTGCAGCCGCA------GCAGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCAGCAGTCTGTGCTGCCCAGCAGCAGGCAGTGGTGGTGCAACA---------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCTTAAGAA--------------------------------------------------------------------------------------------ACAG--TACTATAAAGTTACTATATAAGAACTTT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGTGCTCTGCATCTCGC....................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................CACCATCAGCAGCAGCAG---------GC.......................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................CCATCAGCAGCAGCAG---------GC.......................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCATCAG------------------CAGCAGCAATCGCAGCAGCAGGCTG---CCGCAGCAGCCGCCG---CTGCAGCTGCA------GCAGCCCACCATCAGCAGCAGCAA---------GCTGTGGCCGCTGCCGTCTGTGCCGCCCAGCAACAAGCTGTGGTTGTGCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTCTGCATCTCGCCTAAGCAGGGTAAGCTAAAGAA--------------------------------------------------------------------------------------------TCAG------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCAGCATCAG------------------------------CACCCCCAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAGCAGCAGGCCG---CCGCAGCAGCCGCCG---CTGCCGCCGCC------GCCGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCCGCCGTCTGCGCCGCCCAGCAGCAGGCGGTGGTGGTGCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCCTAAGAC--------------------------------------------------------------------------------------------TCAA------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGCAGCAGCAG------------------------------CATCCCCAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAACAGCAGGCCG---CCGCAGCTGCCGCCG---CTGCAGCCGCA------GCCGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCCGCCGTCTGTGCCGCCCAGCAGCAGGCGGTGGTGGTGCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCTAAGAAA--------------------------------------------------------------------------------------------T---------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AG---------------------------------------CATCCGCAGTCGCAGTCGCCGCATCAGCATCAGC---------ATCAGCAGCAGTCGCAGCAACAGGCCG---CCGCAGCAGCCGCCG---CTGCAGCCGCA------GCAGCTCACCACCAGCAGCAGCAG---------GCGGTGGCCGCCGCCGTCTGTGCCGCCCAACAACAAGCGGTGGTGGTGCAGCAG------------------------------------------------------CAGCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCCAAAGAA--------------------------------------------------------------------------------------------TCAG------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

-G---------------------------------------CACACACAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAGCAACAGGCCG---CCGCAGCAGCCGCCG---CTGCAGCCGCC------GCAGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCCGCCGTCTGTGCCGCCCAGCAGCAGGCGGTGGTGGTGCAGCAG------------------------------------------------------CAGCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGCTTAAGAA--------------------------------------------------------------------------------------------TCAG------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AG---------------------------------------CACCCCCAGTCGCAGTCGCCGCACCAG------------------CAGCAGCAGTCGCAGCAACAGGCCG---CCGCAGCCGCCGCAGCCGCCGCCGCCGCAGCAGCGGCCGCCCACCACCAGCAGCAGCAG---------GCCGTCGCCGCCGCCGTCTGCGCCGCCCAGCAGCAGGCCGTGGTGGTGCAGCA---------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTCTGCATCTCGCCCAAGCAGGGTAAGC-------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCACCAG------------------C---AGCAGTCTCAGCAGCAGGCCG---CTGCTGCCGCCGCCGCAGCAGCCGCTGCA------GCTGCCCATCACCAGCAGCAGCAG---------GCGGTGGCTGCCGCCGTCTGTGCCGCCCAGCAGCAGGCGGTAGTGGTGCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGC---AGCAGGTGCTTAGCATCTCTCCCAAGCAGGGTAAGCAAAGGAA------------------------------------------TT------------------------------------------------TTGA------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AG---------------------------------------CATCCCCAGTCGCAGTCGCCGCACCAG------------------C---AGCAGTCGCAGCAGCAGGCTG---CCGCTGCAGCCGCCG---CAGCTGCTGCT------GCCGCCCACCACCAGCAACAGCAG---------GCAGTGGCCGCCGCCGTCTGCGCCGCCCAACAACAGGCAGTGGTCGTCCA------------------------------------------------------------GCAGCAGCAGCAATACCAGATCCACTCGCAGCAGCAATCGCCGCAGC---AGCAGGTGCTCAGCGTTTCCCCCAAGCAGGGTAAGTTCTGAAAAAAAAAAACTCTCCAAAGACAAGACTATAT-------------------TAAATTCTCCGGAATTATTAATTTCATTAAA------------TTAA------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................CAGCAGCAGGCTG---CCGCTGCAGCC..................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................CAACAACAGGCAGTGGTCGTCCA------------------------------------------------------------GCA........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.............................................................................................................TG---CCGCTGCAGCCGCCG---C..........................................................................................................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	1	0	0	0	0

droBip1

A------------------------------------------TCCCCAGTCGCAGTCGCCACACCAGCAC---------------CAGCAGCAGTCGCAGCAGCAGGCCG---CCGCTGCAGCCGCCG---CAGCCGCTGCT------GCCGCCCACCACCAGCAACAACAG---------GCCGTGGCCGCCGCCGTCTGCGCCGCCCAACAACAGGCAGTGGTCGTCCA------------------------------------------------------------GCAGCAGCAGCAGTACCAGATCCACTCGCAGCAGCAATCGCCGCAGC---AGCAGGTGCTCAGCGTTTCCCCCAAACAGGGTAAGTTC--------------TCTACAAAG------CTCTATAATGAAGACCAGTCTTAAATAAACTCTCCCTAATTAGTAATCTCATTAAATTAACCAAAAAGTAAA------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

AG---------------------------------------CATCCCCAGTCGCAGTCGCCACACCTGCAGCAGCAGCACTCGCAGCAGCAGCACTCGCAACAGCAGGCCGTGGCTGCAGCAGCCGCCG---CTGCC------------GCCGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCCGCCGTCTGTGCCGCCCAGCAGCAGGCGGTGGTCGTCCAG---------------------------------------------------------------CAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCCCAGC---AGCAGGTGCTCAGCATCTCGCCCAAGCAGGGTAAGCCAAA---------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................AGCAGTACCAGATCCACTCGCAGCA..........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................CAGCAGCAG---------GCGGTGGCG................................................................................................................................................................................................................................................................................................................................	18	14	0.07	1	0	1	0	0	0	0	0	0	0	0

droPer2

AG---------------------------------------CATCCCCAGTCGCAGTCGCCACACCTGCAGCAGCAGCACTCGCAGCAGCAGCACTCGCAACAGCAGGCCGTGGCCGCAGCAGCCGCCG---CTGCC------------GCCGCCCACCATCAGCAGCAGCAG---------GCGGTGGCCGCCGCCGTCTGTGCCGCCCAGCAGCAGGCGGTGGTCGTCCAG---------------------------------------------------------------CAGCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCCCAGC---AGCAGGTGCTCAGCATCTCGCCCAAGCAGGGTAAGCCAAA---------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................ACTCGCAGCAGCAGCACTC..............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................ATCAGCAGCAGCAG---------GCGG.....................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0

droWil2

AGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCACTCGCATTCGCAATCGCAGTCACCGCACCAA------------------CAGCAGCAATCGCAG---CAAGCCG---CTGCAGTGGCAGCAGCAGCAGCTGCAGCA------GCTGCTCACCATCAGCAGCAACAG---------GCCGTGGCCGCTGCAGTCTGTGCTGCTCAGCAGCAGGCAGTTGTCGTTCAGCA---------------------------------------------------------GCAGCAGCAGCAATATCAAATCCATTCGCAGCAGCAATCACCTCAGC---AGCAGATCCTGAGCATTTCTCCCAAGCAGGGTAAGTC------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................GCTCAGCAGCAGGCAGTTGTC............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.......ACAGCAGCAGCAGCAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
....GCAACAGCAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1
..CAGCAACAGCAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
...........CAGCAGCAGCAGCAACAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
...............AGCAGCAGCAACAACAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
............AGCAGCAGCAGCAACAACAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.....CAACAGCAGCAGCAGCAGCAACAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0

droVir3

-------------------------------------------TCCACAGTCCCAGTCGCCGCATCAG------------------C---AGCAGTCGCAGCAGCAAGCGG---TCGCTGCAGCCGCTGCAGCTGCAGCAGCA------GCAGCTCATCATCAGCAGCAGCAACAA---GCTGCTGTCGCCGCGGCCGTTTGTGCCGCTCAGCAGCAGGCGGTGGCCGTTCAACAACAACAGCAGCAAC------------------------------------AACAGCAGCAGCAGCAGCAATACCAAATCCACTCGCAACAGCAGTCGCCGCA------GCAGGTGCTCAGCGTTTCGCCCAAGCAGGGTAAGCAAAAGAT--------------------------------------------------------------------------------------------TTAA------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................TGTCGCCGCGGCCGTTTGTGC..................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AAC------------------------------------AACAGCAGCAGCAGCA..................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................ATCATCAGCAGCAGCAACAA---............................................................................................................................................................................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AGCAAC------------------------------------AACAGCAGCAGCAGCA..................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................CAGCAAC------------------------------------AACAGCAGCAGCA.....................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AGCAAC------------------------------------AACAGCAGCAGCAGC...................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CAACAACAACAGCAGCAAC------------------------------------AAC...............................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AGCAAC------------------------------------AACAGCAGCAGCA.....................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................GCAGCAAC------------------------------------AACAGCAGCAGCAGCAGC................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CAAC------------------------------------AACAGCAGCAGCAGCA..................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................AGCAGCAAC------------------------------------AACAGCAGCA........................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AC------------------------------------AACAGCAGCAGCAGCA..................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................CAGCAAC------------------------------------AACAGCAGCAGCAGCAG.................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

-------------------------------------------TCCGCAGTCCCAGTCGCCGCATCAG------------------C---AGCAGTCGCAGCAGCAGGCAG---TCGCAGCAGCAGCAGCAGCCGCCGCCGCA------GCTGCTCATCATCAGCAGCAGCAGCAA---GCAGCCGTGGCCGCTGCCGTCTGTGCCGCCCAGCAGCAGGCGGTGGCCGTGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACAGCAGCAGCAACAGCAGCATTACCAAATTCACTCGCAGCAACAGTCGCCGCA------GCAGGTGCTTAGCGTATCGCCCAAGCAGGGTAAG------AA--------------------------------------------------------------------------------------------TCAC------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACAACAGC.............................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	2	0
.....................................................................................................................................................................................................................................GCAACAGCAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0
........................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAACA.....................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	2	0
.......................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACAACAACAGCAG.............................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................GCAGCAACAACAACAGCAGCAGCAAC......................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................GCAGCAGCAGCAGCCGCCGC....................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAGCAGCA...............................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................AGCAACAACAGCAGCAGCAACAGC.................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
......................................................................................................................AGCAGCAGCAGCAGCCGCC......................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GCAACAACAACAGCAGCAGCAACA.....................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGCAACAGC...................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................CAGCAGCAGCAGCAGCCGCC......................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAGCAGCAACA.....................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................ATCATCAGCAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................AACAACAGCAGCAGCAACAGCAGCAGC...........................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAGCAACAA......................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................AGCAGCAACAACAGCAGCAGCAACAGC.................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................ATCATCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................AACAACAGCAGCAGCAACAGCAGC..............................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..............................................................................................................G---TCGCAGCAGCAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................AGCAGCAGCAGCAACAACA...............................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCAACAACAGC.............................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................ACAACAGCAGCAGCAACAGCAGCAG............................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................CAGCAACAACAGCAGCAGC.......................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................CAACAGCAGCAGCAACAGCA................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCAACA..................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAACA.......................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................GTGCAACAGCAGCAGCAGC.........................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAACA.......................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAGCAGCAACAGC...................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0

droGri2

AG---------------------------------------CATCCACAGTCTCAGTCGCCCCATCAG---------------------CAGCAGTCGCAGCAACAGGCTG---TGGCAGCCGCTGCAGCAGCTGCCGCAGCA------GCCGCTCATCATCAACAGCAGCAACAACAGGCCGCCGTTGCCGCTGCCGTCTGTGCCGCCCAGCAGCAGGCCGTTGCCGTGCAACAGCAACAGCAGCAGCA------------------GCAGCAGCACC------AACAGCAGCAACAGCAACAATACCAAATCCACTCGCAGCAACAGTCGCCGCA------GCAGGTGCTCAGCATTTCGCCCAAGCAGGGTAAGCA------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................................................................................................................................AACAGCAGCAGCA------------------GCAGCAGCA..........................................................................................................................................................................................................................................	22	20	0.15	3	3	0

dsi_19094

3r:23274115-23274265 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-63.3	-63.3	-63.2