ID:

dsi_19086

 Coordinate:

3r:17513675-17513824 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CATGGTCAGCCTGCCTTGGACTTGCACTTTGCATTTGGTCAGCACGAAAACTAACTCAAACACGAGAGAAAAATGTGGTCCAAGTGAAAGGGGAACTTAGGATACTCTTTGAATATTAATGTATTGCACTAAACTCTTTATTAATGCTAAGCTAAGAATTCTATGTAAATAAATACTCTAACTATCTCTTTTCATTTCAGTTGAACTCAAAACAGACACTGGCGCACAAAAGAACCTGTCATCTAGAACA
**************************************************....(((......)))...............(((((((((((((((.((((((..((((....((((((((.................)))))))).......)))))))))).))..................)))))))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
........................................................................................................................................................................................................................................AACCTGTCATCTAGAACA 18 0 1 1.00 1 0 0 0 1 0 0
........................................................................................................................................................................................................................CACTGGCGCACAAAAGAACCTGTCATT....... 27 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................CAAAACAGACACTGGCGCACAATAGA................. 26 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................TTTTGAACTCAAAACAGACACTGGC........................... 25 2 1 1.00 1 1 0 0 0 0 0
....................................................................AAGAATCTGGTCCATGTGAAAGG............................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................TGGCGCACAAATGAACCTGTCATC....... 24 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................TGAACTCAAAACAGACACTGGCGCACA...................... 27 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................ACAGACACTGGCGCACAATAGAACC.............. 25 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................TTTTGAACTCAAAACAGACACTGG............................ 24 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................................TGAACTCAAAACAGACACTGGCGCAC....................... 26 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................................................................................................GAACCTATCGTCTAGA... 16 2 10 0.20 2 0 0 0 0 2 0
.............................................................................GTCCAAGTGAAAGGGA............................................................................................................................................................. 16 1 5 0.20 1 0 1 0 0 0 0
..............................................................................................................................................................TTCTATGTAAATAAAGATTCTC...................................................................... 22 3 5 0.20 1 0 0 0 0 0 1
..............................................................................TCCAAGTGAAAGGGA............................................................................................................................................................. 15 1 19 0.11 2 1 0 0 1 0 0

Anti-sense strand reads

GTACCAGTCGGACGGAACCTGAACGTGAAACGTAAACCAGTCGTGCTTTTGATTGAGTTTGTGCTCTCTTTTTACACCAGGTTCACTTTCCCCTTGAATCCTATGAGAAACTTATAATTACATAACGTGATTTGAGAAATAATTACGATTCGATTCTTAAGATACATTTATTTATGAGATTGATAGAGAAAAGTAAAGTCAACTTGAGTTTTGTCTGTGACCGCGTGTTTTCTTGGACAGTAGATCTTGT
**************************************************....(((......)))...............(((((((((((((((.((((((..((((....((((((((.................)))))))).......)))))))))).))..................)))))))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
.......................................................................................................................................................................................................CTACTAGAGTTTTTTCTGTGAC............................. 22 3 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................GATTGATAAAGAAATGTAAGGT................................................... 22 3 4 0.25 1 0 1 0 0 0 0
....................................................................................................................................TGAGAAATAGTTATGAT..................................................................................................... 17 2 20 0.20 4 0 0 1 3 0 0
............................................................................................................................................................................................................TGAGTTGTGTCCGTGACC............................ 18 2 5 0.20 1 0 0 1 0 0 0
.........................................................................................CCAGTGGAATCCTATGAGA.............................................................................................................................................. 19 3 7 0.14 1 0 0 0 0 1 0
.................................................................................................................................................................................GATAGACAAAGAAAAGTAAAGT................................................... 22 3 8 0.13 1 0 1 0 0 0 0
....................................................................................................................................TGAGAAATAGTTATGATT.................................................................................................... 18 2 14 0.07 1 0 0 1 0 0 0
...................................................ACTGAGCTTGTGCTCT....................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/23/2015 at 10:43 PM