ID:

dsi_1904

 Coordinate:

2l:10213774-10213923 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.2 -6.2 -6.1 -6.1

Flybase annnotation

CDS [2l_10213924_10214101_+]; exon [2l_10213924_10214101_+]; intron [2l_10213603_10213923_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTACGTTTGTATTGGAAGCTTTTGATTTATTACCTTTCCCTAATTATTAAGAAAAGTAATTACATTAATGAAAATTAACATATCAATTCAATCGTTAGATTAAAAGTTACGCTAAAAGAAACTTACACTTAGAAAATTTCTTGCACTTAAAATAATAACTACTATAATTTAAATAACCCCGTCCCTTTTCCCTTCTGCAGTACAGTCTGATAAAAAAGTATGGCTACCCGGCGGAGAATCACACCTTGGA
**************************************************.........((.((.....(((((...((...............((((((((..(((((......((((((...............)))))).............)))))....))))))))........))...))))).....)).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M053
female body
 GSM343915
embryo
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...............................................................................ATATCAATTCAATCGTTAGAT...................................................................................................................................................... 21 0 1 8.00 8 5 3 0 0 0 0 0
................................................................................TATCAATTCAATCGTTAGAT...................................................................................................................................................... 20 0 1 3.00 3 2 1 0 0 0 0 0
.............................................................................................................................................................................................................TCTGATAAAAAAGTATGGCTAAC...................... 23 1 1 2.00 2 2 0 0 0 0 0 0
.............................................................................................................................................................................................................TCTGATAAAAAAGTATGGCT......................... 20 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................CGGCGGAGAATCACACCTTGG. 21 0 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................CTACCCGGCGGAGAATCACAC...... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CCTTTTCCCTTCTGCAGTACA.............................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................................TCTGATAAAAAAGTATGGCTAAAA..................... 24 3 1 1.00 1 0 1 0 0 0 0 0
.................................................................................ATCAATTCAATCGTTAGAT...................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAGTATGGCTACCCCGCGGC............... 20 2 1 1.00 1 0 0 0 1 0 0 0
................................................................................TATCAATTCAATCGTTAGATT..................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................TACAGTCTGATAGAAAAGTAT............................. 21 1 1 1.00 1 0 0 0 0 1 0 0
.................................................................................ATCAATTCAATCGTTAGATT..................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................ACAGTCTGATAAAAAAGTATG............................ 21 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................AAGGAAACTAACACTTAGAATA.................................................................................................................. 22 3 5 0.40 2 0 0 0 0 0 2 0
....................................................................................................................................................................................GTCCCTTTGCCCTTCTGCAT.................................................. 20 2 3 0.33 1 0 0 0 1 0 0 0
........................................................................................................................ACTTACACTTAGGAGATT................................................................................................................ 18 2 6 0.17 1 0 0 0 0 0 1 0
...............................................................................................................................................................................................CTTCTGTAGTACGGT............................................ 15 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

AATGCAAACATAACCTTCGAAAACTAAATAATGGAAAGGGATTAATAATTCTTTTCATTAATGTAATTACTTTTAATTGTATAGTTAAGTTAGCAATCTAATTTTCAATGCGATTTTCTTTGAATGTGAATCTTTTAAAGAACGTGAATTTTATTATTGATGATATTAAATTTATTGGGGCAGGGAAAAGGGAAGACGTCATGTCAGACTATTTTTTCATACCGATGGGCCGCCTCTTAGTGTGGAACCT
**************************************************.........((.((.....(((((...((...............((((((((..(((((......((((((...............)))))).............)))))....))))))))........))...))))).....)).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR902008
ovaries
 GSM343915
embryo
............................................................................................................................................................................................................................ACCGATGGGCTGCCCCTT............ 18 2 7 54.71 383 211 128 44 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGATGGGCTGCCCCTTA........... 19 2 4 33.50 134 35 94 3 0 1 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................ACCGATGGGCTGCCCCTTAA.......... 20 3 11 12.27 135 44 87 3 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCATGTCAGACTATTTTTTCAT.............................. 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGAGGGGCCGCCCCTT............ 18 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGAGGGGCCGCCCCTTAGC......... 21 3 2 1.50 3 0 0 0 0 0 2 0 0 1 0 0 0 0
............................................................................................................................................................................................................................ACCGAGGGGCCGCCCCTTA........... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CGGGAAGACGTAATGACAGACT........................................ 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGTCAGACTATTTTTTCATA............................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TCAGACTATTTTTTCATAC............................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................ACCGAGGGGCTGCCCCTTAG.......... 20 3 6 1.00 6 1 0 0 3 0 0 0 0 0 2 0 0 0
.....................................................................................................................................................................................................GTCATGTCAGACTATTTTTTC................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATGTCAGACTATTTTTTCATACCGATG....................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AGGGAAGACGTCATGTCAGAC......................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TGTCAGACTATTTTTTCATAC............................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGAGGGGCTGCCTCTTA........... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGAGGGGCAGCCTCTTAGC......... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................ACCGAGGGGCTGCCTCTT............ 18 2 8 0.50 4 4 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGAGGGGCCGCCCCTTAA.......... 20 3 9 0.44 4 0 1 0 2 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................CCGATGGGCTGCCCCTTA........... 18 2 7 0.43 3 1 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTCCGATGGGCTGCCCCTT............ 19 3 10 0.20 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGGGGCCGCCTCTTAG.......... 16 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................TTTATCGGGGCAGGGAAATA............................................................ 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................AAGTGGGAAGACGTCATTTC............................................. 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGAGGGGCTGCCTCTTAA.......... 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGATGGGCTGCCCCTTAT.......... 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TCGCCTCTTGGTCTGGAAC.. 19 3 17 0.12 2 0 0 0 0 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGAGGGGCCGCCCCT............. 17 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGATGGGCTGCCCCTTT........... 19 3 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGAGGGGCGGCCCCTTA........... 19 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGAGGGGCTGCCTCT............. 17 2 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TACCGAGGGGCTGCCCCTT............ 19 3 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................TCGTTAAGTTAGCCATC........................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:10213724-10213973 + dsi_1904 TTACGT-TTGTATTG--GAAGCTTTT-G-----------------------------------------------------------------------------------AT-TTATTACCTTT--------------------------------------------CCCT--AA--------TTATTAAGAAAAGTAATTACATTAATGAAAATTAACATATCAATTCAATCGTTAGATTAAAAGTTACGCTAAAAGAAACTTACACTTAGAAAATTT---------------------------------------CT-----------------------------------------------------------------------------TGCACTT------------AAAATAATAACTACTATAA------------TTTAAATAAC---CCCGTCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-CCCTTCTGCAGTACAGTCTGATAAAAAAGTATGGCTACCCGGCGGAGAATCACACCTTGGA
droSec2 scaffold_3:5956742-5957003 + TTACGC-TTGTATAG--GAAGCTTTT-G-----------------------------------------------------------------------------------AT-TTATTACCTTT--------------------------------------------CCCT--AA--------TTATTAAGATAAGTAATTACATTAATGAAAATTTACATATCAATTTAATCGTTTGATTAAAAGTTACGCTAAAAGAAACTTACACTTAGAAAATAG---------------------------------------CT-----------------------------------------------------------------------------TGTTCTT------------AAAATAATATCTACTATAATTACTATAAAAATTTAAATAAC---ACCGTCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT-CTCTTCTGCAGTACAGTCTGATAAAAAAGTATGGCTACCCGGCGGAGAATCACACGTTGGA
dm3 chr2L:10529888-10530127 + TTACGT-TTGTATAG--GAAGCTTTTTG-----------------------------------------------------------------------------------ATTTTCGTACCTCT--------------------------------------------CCCT--AA--------TAATTAAGAAAAGTAATTACATTATTGAAAATTGACATATCAATTTAATCGTTAAATTAACGATTACGCTGATAGAAACTTACACTTAGAAAATTT---------------------------------------GT-----------------------------------------------------------------------------TGTTCTT------------A------------GTAC------------AATTGTAATAAC---CTCGTCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-CCCTTCTGCAGTACAGTCTGATAAAAAAGTACGGCTACCCGGCGGAGAATCACACCTTGGA
droEre2 scaffold_4929:14896848-14897144 - TTACGT-TTGCATAG--GGAGCTTTT-G-----------------------------------------------------------------------------------TT-TTATTACATTT--------------------------------------------CCCT--AA--------TTATTAGGAAAAATAATTACTTTGATGAATTTGGGCACATAAATTTAATTACT-GATTAAAACTGCCGGTAATAGATTCATACACTTAAAAAATCCAATTTTAATCTACTTAAAGAGAGATCAATCAGAAATCAGTCTAATTATAAAAAATGGATAAGAGAAAACATGAGTTAAT-----------------------------------------------------------------------------------------TACAGA---TTTGTG---CTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTT-TCCTTCCGCAGTTCAGTCTGATCAAGAAGTACGGCTACCCGGCGGAGAATCACACCTTGGA
droYak3 2L:6938202-6938324 + TTACGT-TTG-----------------G-----------------------------------------------------------------------------------TT-TTACTACCTTT--------------------------------------------CCCT--AA--------TCATTAAGGAAATTAAATAACTTCGCCTAAATTGACAGATAGATATAATCATTAGATTAAAAGTGTCAGT-ATAGATTTATACCCTTATAAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409554:2642809-2642972 - AGATAAACTATAA------------------------------------------GGAATTACCTTATAGAAATCTAATCCTAAACTGAGATCAATATTTTAATTTAACTTAC-CCACCA----------------------------------------------------------------------------GATAAGAG--------------------------------------------------------------------------------------------------------------------TC---------------------------------------------------------------------------------------------------------------------------------CAGA---T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACTTCCAT-TCCCGTTGCAGGCGGAGCGCATTGAAGAGCATGGCTACCCGGCCGAATCGCATTATGCGGA
droBia1 scf7180000302422:8464665-8464728 + TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-CCCCTCTGCAGTACAACCTTATTAACAAGTATGGCTACCCGGCCGAGAACCACACCGTGGA
droTak1 scf7180000415160:172537-172844 + TAACGT-TTCTGA--------------------------------------------------------------------------------------------------TT-AATTCACAGCTATGTTAATGGTTGTTATGATGATTCAATAAA----------TTTCCATGAAA--------CAAATAAGATTAGT--------TCACGTAAATAAA---TTA-------------------------------------------------------------------------TATAGATCGATCAGAT-TCAATTTATT-------------------CGAGCGTGATTTCATTACAAGGCTCAGTTTTTTTAGTTGTCCATATCAATTACGTGATTTAAAACTAATTCTTATTAAATTACATAGAACCC---C------TTTTATATTAAC---CTCATCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGCT--GTTT-CTCCCCTGCAGTATAGTCTTATAAATAAATATGGCTACCCTGCAGAGAATCACACCGTGGA
droEle1 scf7180000491186:3669229-3669356 + TTCTTGCCTCTAA--------------------------------------------------------------------------------------------------AT-AATA--------------------------------------CTATTCGAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATATAAAATTCATTGACCT-----------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCTGATATCAT-CGCTTTTACAGTACAGTCTTATTCAAAAATATGGCTACCCGGCGGAGAATCATACCGTGGA
droRho1 scf7180000778841:16902-17007 + TAGAAT-ATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------A----------CTAAAGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC---------------GATAACT-----------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTCAAATATTAT-CACAATTATAGTACAATCTTATTAAAAAATATGGCTACCCGGCGGAGAATCATACCGTGGA
droFic1 scf7180000453800:1671444-1671606 - TATATT-AAG------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------ATATTACTAACAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTTCAGAATTTAAA-----GAGATCTTTTAACTGCTTTAAATGATTAGATTT------------------ATAA-----------------------------------------------------------------------AACCA---CTTGAA----------------------------------------------------------------------------------------TAAATTT-------------------CA-ACTT-CTTTTTTAAAGGGTGAGCGCATTGAGGATGATGGCTATCCGATGGAGCGTCATGTGGTGAC
droKik1 scf7180000302472:2796480-2796715 - TTTTGT-ATATATTTTTCACGTGTTT-TGTTTATGAATACTAAATGCTCATATAAGCAATTT-AAATAATAAG-----------------------------------------------------------------------------------CGGTTCGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCTATAGGGTTCAGG-----GCTATCTTTCATTCTAGACAAAAAAATAAGTAT------------------ATAT-----------------------------------------------------------------------TGCATTTCCTAAAA----------------------------------------------------------------------------------------TGTGTTACAAACTTTT------TTTCCTCCTCC-CCCCTTTACAGTATGGTCTCATACACAAATATGGTTATCCGGCTGAGAATCATACCGTGGA
droAna3 scaffold_12916:14492542-14492679 + AAAAGT-TTAAAA------------------------------------------GAAAATA-AATGAAGATGCTTATTCCTGAACATAA------------------------------------------------------------------------------------------------------------------------------------------TATAATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCGT-----------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATATGCGACGAC-TTTTCCAACAGGTGGACCTGATAACCAAATATGGTTACCCGTCGGAGACCCACTACTCGAA
droBip1 scf7180000396572:2593524-2593879 - TAAAGT-CTTTA---------------------------------------------------------------------------------------------------TT-ATACCTCTTTTTTTTAAATTTATGTAGTGAAGTTAAAACATA----------T----------TTTTCACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT---------------GAAATGA-----------------T--------TAAATGCTGTTGGAGAAAAAACTATAAACTGTTAAATAGTCAGTAAAGTGTATAAGCTTAGTCATTTATTTCTCATAAAAGTTTTGTTTAAAAAGTAAGCTGATTTCCCT----TATAAATTTCCCTTATAAATTTATAGACACGTAACCGAAAACCGACCAAGTTTAAAATAAAATAATAATGAGCAATGAACTCTAAAGAAAAGCTATAAAATTAT------A-----TTAAT-TTAATTTACAGTACGGCTTAATTCACAAATATGGTTATCCGGCGGAGAATCACACCGTGGA
dp5 4_group4:2867525-2867630 + ACTGCC-ATG------------------------------------------------------------------------------------------------------------------------------------------------------------A----------TTTGCACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT---------------AACACCT-----------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATCTCGTTT--TTTCTCTCCGGTCAGCCCAAATTAATACGCAAATATGGCTATCCATCGGAGACACACACCGTGGT
droPer2 scaffold_10:1879718-1879823 + ACTGCC-ATG------------------------------------------------------------------------------------------------------------------------------------------------------------A----------TTTGCACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT---------------AACACCT-----------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATCTCGTTT--TTTCTCTCCGGTCAGCCCAAATTAATACGCAAATATGGCTATCCATCGGAGACACACACCGTGGT
droWil2 scf2_1100000004521:10834556-10834668 - CTTGAC-TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTACATTATATACAATAT------------TATAAA---TTCTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTTT-TCTA-TTTTTGTTTAGTATGAATTGATACACAAATATGGTTATCCGGCCGAGAATCATACCCTAAC
droVir3 scaffold_12963:10344206-10344289 - TCTAAG-TTA------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CCAATA-TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA-CCTGCTACTAGGTGGAGCTAATCAAAAAATACGGTTACCCAGTGGAGACACATTTCGTGAA
droMoj3 scaffold_6500:19198581-19198667 - AAATTA-ATT-----------------T-----------------------------------------------------------------------------------AT-CCACTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCGC-TCACCTTACAGTATAATCTTATTAAGAAATATGGCTATCCCGCTGAGAATCACAGTGTGAC
droGri2 scaffold_14954:39366-39491 - ACTTTG-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTATCAAAAATAATAATTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCTAAAATATATAATAC------------AATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTGT-GAAA-ATTCTTTAAAGCCTGGTCTCATAAAAAAATATGGTTACCCATTTGAAGAGCATAAAATCGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTACGT-TTGTATTG--GAAGCTTTT-G-----------------------------------------------------------------------------------AT-TTATTACCTTT--------------------------------------------CCCT--AA--------TTATTAAGAAAAGTAATTACATTAATGAAAATTAACATATCAATTCAATCGTTAGATTAAAAGTTACGCTAAAAGAAACTTACACTTAGAAAATTT---------------------------------------CT-----------------------------------------------------------------------------TGCACTT------------AAAATAATAACTACTATAA------------TTTAAATAAC---CCCGTCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-CCCTTCTGCAGTACAGTCTGATAAAAAAGTATGGCTACCCGGCGGAGAATCACACCTTGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................ATATCAATTCAATCGTTAGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2118.00853000000000000000
..............................................................................................................................................................................................................................TATCAATTCAATCGTTAGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00321000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATAAAAAAGTATGGCT.........................2011.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGGAGAATCACACCTTGG.2111.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCCGGCGGAGAATCACAC......2111.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-CCCTTCTGCAGTACA..............................................2111.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATAAAAAAGTATGGCTAAAA.....................2411.00101000000000000000
...............................................................................................................................................................................................................................ATCAATTCAATCGTTAGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
..............................................................................................................................................................................................................................TATCAATTCAATCGTTAGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...............................................................................................................................................................................................................................ATCAATTCAATCGTTAGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTCTGATAAAAAAGTATG............................2111.00101000000000000000
droSec2
TTACGC-TTGTATAG--GAAGCTTTT-G-----------------------------------------------------------------------------------AT-TTATTACCTTT--------------------------------------------CCCT--AA--------TTATTAAGATAAGTAATTACATTAATGAAAATTTACATATCAATTTAATCGTTTGATTAAAAGTTACGCTAAAAGAAACTTACACTTAGAAAATAG---------------------------------------CT-----------------------------------------------------------------------------TGTTCTT------------AAAATAATATCTACTATAATTACTATAAAAATTTAAATAAC---ACCGTCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT-CTCTTCTGCAGTACAGTCTGATAAAAAAGTATGGCTACCCGGCGGAGAATCACACGTTGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCTACCCGGCGGAGA.............1911.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGCTACCCGGCGGAGA.............2111.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCTACCCGGCGGA...............1811.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTAAATAAC---ACCGTC..............................................................................................................................................................................................................................................................................................................................................................2011.0010001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAATAAC---ACCGTCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT................................................................2111.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT-CTCTTCTGCAG..................................................2311.0010001
dm3
TTACGT-TTGTATAG--GAAGCTTTTTG-----------------------------------------------------------------------------------ATTTTCGTACCTCT--------------------------------------------CCCT--AA--------TAATTAAGAAAAGTAATTACATTATTGAAAATTGACATATCAATTTAATCGTTAAATTAACGATTACGCTGATAGAAACTTACACTTAGAAAATTT---------------------------------------GT-----------------------------------------------------------------------------TGTTCTT------------A------------GTAC------------AATTGTAATAAC---CTCGTCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-CCCTTCTGCAGTACAGTCTGATAAAAAAGTACGGCTACCCGGCGGAGAATCACACCTTGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................T------------A------------GTAC------------AATTGTAATAAC---CTCG................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GT-TTGTATAG--GAAGCTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TTCTT------------A------------GTAC------------AATTGTAATA.........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATAAAAAAGTACGGCTAC.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GTATAG--GAAGCTTTTTG-----------------------------------------------------------------------------------ATTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATAAAAAAGTACGGCTAC.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTACGGCTACCCGGCG.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTACGGCTACCCGGCGG................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............................................................................................................................................................................................................................................TAAATTAACGATTACGCTGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---CTCGTCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-CCCTTCTGCAG..................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-CCCTTCTGCAG..................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAAAAAGTACGGCTACC......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................ATTGAAAATTGACATATCATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
droEre2
TTACGT-TTGCATAG--GGAGCTTTT-G-----------------------------------------------------------------------------------TT-TTATTACATTT--------------------------------------------CCCT--AA--------TTATTAGGAAAAATAATTACTTTGATGAATTTGGGCACATAAATTTAATTACT-GATTAAAACTGCCGGTAATAGATTCATACACTTAAAAAATCCAATTTTAATCTACTTAAAGAGAGATCAATCAGAAATCAGTCTAATTATAAAAAATGGATAAGAGAAAACATGAGTTAAT-----------------------------------------------------------------------------------------TACAGA---TTTGTG---CTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTT-TCCTTCCGCAGTTCAGTCTGATCAAGAAGTACGGCTACCCGGCGGAGAATCACACCTTGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTACGGCTACCCGGCGGAGAA............2311.0010000100
droYak3
TTACGT-TTG-----------------G-----------------------------------------------------------------------------------TT-TTACTACCTTT--------------------------------------------CCCT--AA--------TCATTAAGGAAATTAAATAACTTCGCCTAAATTGACAGATAGATATAATCATTAGATTAAAAGTGTCAGT-ATAGATTTATACCCTTATAAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
AGATAAACTATAA------------------------------------------GGAATTACCTTATAGAAATCTAATCCTAAACTGAGATCAATATTTTAATTTAACTTAC-CCACCA----------------------------------------------------------------------------GATAAGAG--------------------------------------------------------------------------------------------------------------------TC---------------------------------------------------------------------------------------------------------------------------------CAGA---T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACTTCCAT-TCCCGTTGCAGGCGGAGCGCATTGAAGAGCATGGCTACCCGGCCGAATCGCATTATGCGGASizeHit CountTotal NormTotal
No Reads
droBia1
TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-CCCCTCTGCAGTACAACCTTATTAACAAGTATGGCTACCCGGCCGAGAACCACACCGTGGASizeHit CountTotal NormTotal
No Reads
droTak1
TAACGT-TTCTGA--------------------------------------------------------------------------------------------------TT-AATTCACAGCTATGTTAATGGTTGTTATGATGATTCAATAAA----------TTTCCATGAAA--------CAAATAAGATTAGT--------TCACGTAAATAAA---TTA-------------------------------------------------------------------------TATAGATCGATCAGAT-TCAATTTATT-------------------CGAGCGTGATTTCATTACAAGGCTCAGTTTTTTTAGTTGTCCATATCAATTACGTGATTTAAAACTAATTCTTATTAAATTACATAGAACCC---C------TTTTATATTAAC---CTCATCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGCT--GTTT-CTCCCCTGCAGTATAGTCTTATAAATAAATATGGCTACCCTGCAGAGAATCACACCGTGGASizeHit CountTotal NormTotal
No Reads
droEle1
TTCTTGCCTCTAA--------------------------------------------------------------------------------------------------AT-AATA--------------------------------------CTATTCGAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATATAAAATTCATTGACCT-----------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCTGATATCAT-CGCTTTTACAGTACAGTCTTATTCAAAAATATGGCTACCCGGCGGAGAATCATACCGTGGASizeHit CountTotal NormTotal
No Reads
droRho1
TAGAAT-ATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------A----------CTAAAGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC---------------GATAACT-----------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTCAAATATTAT-CACAATTATAGTACAATCTTATTAAAAAATATGGCTACCCGGCGGAGAATCATACCGTGGASizeHit CountTotal NormTotal
No Reads
droFic1
TATATT-AAG------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------ATATTACTAACAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTTCAGAATTTAAA-----GAGATCTTTTAACTGCTTTAAATGATTAGATTT------------------ATAA-----------------------------------------------------------------------AACCA---CTTGAA----------------------------------------------------------------------------------------TAAATTT-------------------CA-ACTT-CTTTTTTAAAGGGTGAGCGCATTGAGGATGATGGCTATCCGATGGAGCGTCATGTGGTGACSizeHit CountTotal NormTotal
No Reads
droKik1
TTTTGT-ATATATTTTTCACGTGTTT-TGTTTATGAATACTAAATGCTCATATAAGCAATTT-AAATAATAAG-----------------------------------------------------------------------------------CGGTTCGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCTATAGGGTTCAGG-----GCTATCTTTCATTCTAGACAAAAAAATAAGTAT------------------ATAT-----------------------------------------------------------------------TGCATTTCCTAAAA----------------------------------------------------------------------------------------TGTGTTACAAACTTTT------TTTCCTCCTCC-CCCCTTTACAGTATGGTCTCATACACAAATATGGTTATCCGGCTGAGAATCATACCGTGGASizeHit CountTotal NormTotal
No Reads
droAna3
AAAAGT-TTAAAA------------------------------------------GAAAATA-AATGAAGATGCTTATTCCTGAACATAA------------------------------------------------------------------------------------------------------------------------------------------TATAATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCGT-----------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATATGCGACGAC-TTTTCCAACAGGTGGACCTGATAACCAAATATGGTTACCCGTCGGAGACCCACTACTCGAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............A------------------------------------------GAAAATA-AATGAAGATGCTTATTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
droBip1
TAAAGT-CTTTA---------------------------------------------------------------------------------------------------TT-ATACCTCTTTTTTTTAAATTTATGTAGTGAAGTTAAAACATA----------T----------TTTTCACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT---------------GAAATGA-----------------T--------TAAATGCTGTTGGAGAAAAAACTATAAACTGTTAAATAGTCAGTAAAGTGTATAAGCTTAGTCATTTATTTCTCATAAAAGTTTTGTTTAAAAAGTAAGCTGATTTCCCT----TATAAATTTCCCTTATAAATTTATAGACACGTAACCGAAAACCGACCAAGTTTAAAATAAAATAATAATGAGCAATGAACTCTAAAGAAAAGCTATAAAATTAT------A-----TTAAT-TTAATTTACAGTACGGCTTAATTCACAAATATGGTTATCCGGCGGAGAATCACACCGTGGASizeHit CountTotal NormTotal
No Reads
dp5
ACTGCC-ATG------------------------------------------------------------------------------------------------------------------------------------------------------------A----------TTTGCACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT---------------AACACCT-----------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATCTCGTTT--TTTCTCTCCGGTCAGCCCAAATTAATACGCAAATATGGCTATCCATCGGAGACACACACCGTGGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACTGCC-ATG------------------------------------------------------------------------------------------------------------------------------------------------------------A----------TTTGCACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT---------------AACACCT-----------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATCTCGTTT--TTTCTCTCCGGTCAGCCCAAATTAATACGCAAATATGGCTATCCATCGGAGACACACACCGTGGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CTTGAC-TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTACATTATATACAATAT------------TATAAA---TTCTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTTT-TCTA-TTTTTGTTTAGTATGAATTGATACACAAATATGGTTATCCGGCCGAGAATCATACCCTAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TCTAAG-TTA------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CCAATA-TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA-CCTGCTACTAGGTGGAGCTAATCAAAAAATACGGTTACCCAGTGGAGACACATTTCGTGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCAGTGGAGACACATTTCGT...2318.008000001000100000000001000000001020200000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGTTACCCAGTGGA...............1818.008000003000100000000000000000000000400000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACGGTTACCCAGTGGA...............2015.005000004000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATACGGTTACCCAGTGGAGACAC..........2614.004000002000200000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATACGGTTACCCAGT..................2012.002000000000000000000000000000002000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATACGGTTACCCAGTGGA...............2312.002000000000100000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAGTGGAGACACATTTCGT...2212.002000000000100000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATACGGTTACCCAGTGGAGA.............2511.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGTTACCCAGTGGAGAC............2111.001000001000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATACGGTTACCCAGTGGA...............2111.001000001000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACGGTTACCCAGTGGAGAC............2211.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTACCCAGTGGAGACACATTTC.....2511.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTAATCAAAAAATACGGTT.........................2311.001000000010000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGTTACCCAGTGGG...............1811.001000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGTTACCCAGTGGAGA.............1911.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATACGGTTACCCAGTGGAG..............2311.001000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAATACGGTTACCCAGTGGA...............2411.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGTTACCCAGTGGAG..............1811.001000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAATACGGTTACCCAGT..................2111.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGTTACCCAGTGGAGACACATTTC.....2811.001000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACGGTTACCCAGTGGAGACACAT........2711.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGTTACCCAGTGGAGACAC..........2311.001000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATACGGTTACCCAGTGG................2211.001000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTTACCCAGTGGAGACACAT........2311.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACCCAGTGGAGACACATTTCGT...2611.001000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACGGTTACCCAGTGGAGA.............2111.001000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGTTACCCAGTGGAGACACATTT......2711.001000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGTTACCCAGTGGAGACAC..........2211.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATACGGTTACCCAGT..................1811.001000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTAATCAAAAAATACGGTT.........................2411.001000000010000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACGGTTACCCAGTGGAG..............2111.001000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATACGGTTACCCAGTGGAGAC............2511.001000000010000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACGGTTACCCAGTGGAGACA...........2311.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
AAATTA-ATT-----------------T-----------------------------------------------------------------------------------AT-CCACTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCGC-TCACCTTACAGTATAATCTTATTAAGAAATATGGCTATCCCGCTGAGAATCACAGTGTGACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACTTTG-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTATCAAAAATAATAATTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCTAAAATATATAATAC------------AATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTGT-GAAA-ATTCTTTAAAGCCTGGTCTCATAAAAAAATATGGTTACCCATTTGAAGAGCATAAAATCGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:53 PM