dsi_1903

Name	Class	Family	Strand
Gypsy8-I_Dpse-int	LTR	Gypsy	+
(CAG)n	Simple_repeat	Simple_repeat	+

CACTCGCCGCCGAGTGCAGCTGCTCCTCCCACAATGGAGGAGCCGCCGGAGGAGGAGGAGGAGGAGTAGGAGTAGGAGCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCAGCGGAGGCGCAGCAGTCGGCACCACTCATCATCAGCACCAACAGCACCACCAGCATCACCACCATCCGAATCATCTGCATCAGCATCAGCCCCATCAATTGCCGCAGCAGCAGCAGCAGCAGGCACATCAGGCGGCACA ************************************************.((...(((((.((.....((((.((.((.(((...((.((((....)))).))....((.(((....))).)).))).)).)))))).......((.......)).............)).)).)))...))...(((....)))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
...........................................................................................................AGCAGCGGAGGCGCAGCAGTCGGC.......................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................TCATTTGCATGAGCATCAGCTC...............................................	22	3	1	1.00	1	0	1	0	0	0	0
................................................................................................................CGGAGGCGCAGCAGTCGGC.......................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................CCAGCATCTCCACCATCC........................................................................	18	1	2	0.50	1	0	0	1	0	0	0
......CCGCAGAGTGCAGCTG....................................................................................................................................................................................................................................	16	1	4	0.25	1	0	0	0	1	0	0
.....................................................................GAGTAGGAGGACGCGGGG...................................................................................................................................................................	18	2	6	0.17	1	0	0	0	0	1	0
...................................................................................GGGGCCGCCGTGAACGGTA....................................................................................................................................................	19	3	9	0.11	1	0	0	0	1	0	0
.................................................AGGAGGAGGAGGAGGAGTAGG....................................................................................................................................................................................	21	0	9	0.11	1	0	0	1	0	0	0
......................................................................AGTAGGAGGACGCGGG....................................................................................................................................................................	16	2	20	0.10	2	0	0	0	0	2	0
........................................................................................................................CGGCAGTCGGCACCA...................................................................................................................	15	1	11	0.09	1	0	0	0	0	0	1
................................................GAGGAGGAGGAGGAGGAGTAG.....................................................................................................................................................................................	21	0	12	0.08	1	0	0	1	0	0	0
......................................................................AGTAGGAGGACGCGGGG...................................................................................................................................................................	17	2	15	0.07	1	0	0	0	0	1	0
.....................................................................GAGTAGCAGCAGGCGCGG...................................................................................................................................................................	18	2	17	0.06	1	0	0	0	1	0	0
..............................................CGGAGGAGGAGGAGGAGGA.........................................................................................................................................................................................	19	0	20	0.05	1	0	0	1	0	0	0

GTGAGCGGCGGCTCACGTCGACGAGGAGGGTGTTACCTCCTCGGCGGCCTCCTCCTCCTCCTCCTCATCCTCATCCTCGTCCGCCCCGTCGGCGCTTGCCGTCGTCGTCGTCGCCTCCGCGTCGTCAGCCGTGGTGAGTAGTAGTCGTGGTTGTCGTGGTGGTCGTAGTGGTGGTAGGCTTAGTAGACGTAGTCGTAGTCGGGGTAGTTAACGGCGTCGTCGTCGTCGTCGTCCGTGTAGTCCGCCGTGT ************************************************.((...(((((.((.....((((.((.((.(((...((.((((....)))).))....((.(((....))).)).))).)).)))))).......((.......)).............)).)).)))...))...(((....)))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo
..................................................................................................................................GAGGTGAGTAGTAGTC........................................................................................................	16	1	5	1.80	9	9	0	0	0
.....CGGCGGCTCACGTCG......................................................................................................................................................................................................................................	15	0	2	0.50	1	1	0	0	0
..................................................................................................................................GAGGTGAGTAGTAGTCAT......................................................................................................	18	2	4	0.50	2	2	0	0	0
....................................................................................................................................GGTGAGTAGTAGTCAT......................................................................................................	16	1	3	0.33	1	1	0	0	0
.................................................................................................................................TGAGGTGAGTAGTAGTC........................................................................................................	17	2	20	0.25	5	5	0	0	0
..................................................................................................................................GAGGTGAGTAGTAGTCA.......................................................................................................	17	2	20	0.15	3	3	0	0	0
...................................................................................................................................................................CGAAGTCGTGGTAGGCTTTGT..................................................................	21	3	8	0.13	1	0	1	0	0
....................................................................................................................................GGTGAGTAGTAGTCA.......................................................................................................	15	1	20	0.10	2	2	0	0	0
..........GCGCACGTCGACGATGA...............................................................................................................................................................................................................................	17	2	20	0.05	1	0	1	0	0
.....................................................................................................TCATCGTCGTGGCCTCC....................................................................................................................................	17	2	20	0.05	1	1	0	0	0
............................................................................................................................................................................AGTAGACTTAGTAGACATAG..........................................................	20	3	20	0.05	1	0	0	1	0
.............................................................................................................................................................................................TGTTCGAAGTCGGGGTAGT..........................................	19	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:15763048-15763297 +	dsi_1903	CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGAGGAG---CCGCCGGAGGAGGAGGAGGAGGAG---------TAGG---------------A---GTAGGA---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---------------------------------------------GCGGA------------------------------GGCGCAGCAGTCG---GCA------C---CAC---TCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------TCTGCATCAGCATCAGCCCCATCAATTGCCG---C----------------------------------------AGCAGCAGCAGC---------------------------AGCA------------------GGCACATCAGGCGGCA---------C------A
droSec2	scaffold_1:12625484-12625727 +		CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGAGGAG---CCGCCGGAGGAGGAGGAGGAGGAG---------TAGG---------------A---GTAGGA---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---------------------------------------------GCGGA------------------------------GGCGCAGCAGTCG---GCA------C---CAC---TCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------TCTGCATCAGCATCAGCCCCATCAATTGCCG---C----------------------------------------------AGCAGC---------------------------AGCA------------------GGGACATCAGGCGGCA---------C------A
dm3	chr2R:15110780-15111035 +		CACT--CGG---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGAGGAG---CCGCCGGAGGAGGAGGAGGAGGAG------GAGTTGG---------------A---GTAGGA---GCAGGCGGAGCAGCCGCGAACGGCAGCAGCAGCA---G---------------------------C------------AGCGGA------------------------------GGCGCAACAGTCG---GCA------C---CAC---TCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------TCTGCATCAGCATCAGTCCCATCAATTGCCG---C----------------------------------------AACAGCAGCAGC---------------------------AGCA------------------GTCACATCAGGCGGCA---------C------A
droEre2	scaffold_4845:9310380-9310632 +		CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGAGGAG---CCGCCGGAGGAGGAGGAGGAGGAG------------G---------------A---GTAGGA---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---G---------------------------C------------AGCGGA------------------------------GGCGGAGCAGTCG---GCA------C---CAC---TCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------TCTGCATCAGCATCAGCCTCATCAATTGCCG---CCGC-------------------------------------AGCAGCAGCAGC---------------------------AGCA------------------GGCACATCAGGCGACG---------C------A
droYak3	2R:14067795-14068071 -		CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGCGGAG---CCGCCGCCGGAGGAGGTGGAGGAGGAGGAGGAGGAGG---------------A---GTTGGA---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---G---------------------------CAACAGC------AGCGGA------------------------------GGCGGAGCAGTCG---GCA------C---CAC---TCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCATCA---------------TCCGAATCA---------TCTGCATCAGCATCAGTCTCATCAATTGCCG---CAGC----------------------------AGCAGC---A---GCAACAG------------------------CAGCAGCA------------------AGCACATCAGGCGGCA---------C------A
droEug1	scf7180000409663:186595-186886 -		CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGAGGAG---CCGCCGGAGGAGGAGGAGGAGGAG------------G---------------A---GT---A---ACAGGCGGGGCACCCGCGAACGGCAGCAGCAGCAACAG---TGGCGGC------GGCAGCAACAGC---GGC------AGCGGA------------------------------GGCGGAGCAGTCG---GCA------C---CAC---CCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------TTCGCATCAGCATCAGCTGCATCAAATGCCG---CAGC----------------AGCAGCCGCA---------------GCAACAGC------AGCAGGCAC---------ATCAACA------------------GCAACATCAGGCGGCA---------C------A
droBia1	scf7180000302292:1222184-1222451 -		CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAACGGAGGGG---CCGCCGGAGGAGGAGCTGGAGGAG------------------------------------GA---GCAGGCGGGGCAGCAGCGAACGGCAGCAGCAGCG---G---------------------------C---GGC------AGCGGA------------------------------GGCGGAGCAGTCG---GCA------C---CAC---CCATCA------------TCAGCACCAACAGC---ACCACCAGCATCAGCATACCCACCA---------------TCCGAATCACCC---GCATCCGCATCAGCATCAGCAACATCAACTGCCG---CCGC----------------------------AGCAGC---AACAGCAGCAG---------------------------CAGCA------------------GCAACATCAGGCGGCA---------C------A
droTak1	scf7180000415386:240334-240613 +		CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAACGGAGGGG---CCGCCGGAGGAGGAGGAGCAGGAG---------GAGC---------------A---GTAGGA---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---G---------------------------CAGCA---------GCGG------------------------------------------CG---GCACCAGCAC---CCACCATCATCA------------ACAGCACCTACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------CCCGCATCCGAATCAGCAACATCAAATGCCG---CAAC---------AGCA-AC---------------------CGCCGCAGCAGC------AGGCGGCTC---------ATCAGCA------------------GCATCATCAGGCGGCT---------CAGCAGCA
droEle1	scf7180000491009:11352-11670 -		CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAACGGAGGAG---CCGCCGGAGTAGGAGTAGGAGTAGGAGGAGGAGGAGG---------------A---GGAGGA---GCAGGCGGGGCAGCTGCGAACGGCAGCAGCAGCA---G---------------------------CAGCGGC---------GGC---GG---------------------CGCTGGCGGAGCAGTCG---GCA------C---CAC---CCATCA------------TCAGCACCACCAAC---ACCACCAGCAT------CACCACCA---------------TCCGAATCATCCGAATCACCTGCATCAGCATCAGCAACATCCATTGCCG---CAGCAGCAACAGCAGCA-GGCGC------------------AACAGCAGCAGC------AGCAGGCGCATC---AGCAGCAGCA------------------GCAGCAGCAGGCGGCA---------C------A
droRho1	scf7180000780106:129489-129777 -		CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGAGGAG---CCGCCGGAGGAGGAGGAGGAGGTGGAG------GTGG---------AAGTGGAAGTGGAGGA---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---G---------------------------C---GGC------AGCGGA------------------------------GGCGGAGCAGTCG---GCA------C---CAC---CCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------TCCGCATCAGCATCAGCAACATCAATTGCCG---CCGC-------------------------------------AGCAGCACCAACAGCAGCCGGCGGCAC---------ATCAGCA------------------GCAGCACCAGGCGGCA---------C------A
droFic1	scf7180000454044:939750-940041 +		CACT--CGC---------------------------------CGCCGAGTGCAGTTGCGCCTCCCACAATGGAGGAGGGGCCACCGGGGGAGGAGGAGGAGGTG---GAGGAGTGTC---------------A---GGCGTT---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---G------T---------GGCAGCAA---C------------AGCGGC------------------------------AGCGGAGCAGTCG---GCA------G---CAC---CCATCA------------TCAGCACCATCAGC---------AGCAT------CACCACCA---------------TCCGAATCA---------CCCGCATCAGCATACGCAACATCAAATGCAG---CAGT---------CGC-------------------------AGCAGCAGCAGC------AAGTGGCACATCCCCTCCAGCAGCA------------------GCAACATTTGGCGGCA---------C------A
droKik1	scf7180000302682:931410-931731 +		CACT--ACT-G--GCCAGCACAACCAGCGGCGGCGGCGGCTCCACCGAATGCAGCTGCTCCTCCCACAATGGAGCAG---CGGCTGTGGGAGGAGGCGTCGGAG---GAGGAGGTGG---------------A---GCGGGA---GCAGGCGGGGCGGCGGCAAACGGCAGCGGCAGCA---G---------------------------C---------------GGA------------------------------GGCGGAGTCGCAG---GCACCAGCAC---CAC------CCA------------TCAGCACCATCAGC---ACCACCAGCAT------CACCACCA---------------GCTTCACCA---------TCCCAATCCGAATCACCACCATCAG---CAG---C----------------------------------------AACAGCAGCAGC------AGCAGAATCATC---AGCATCTGCCCGCTCAGGCTCAGGCTCAGGCCCAGCTACAGCAG---------C------A
droAna3	scaffold_13266:11451221-11451524 -		CACT--CGG---------------------------------CGCCGAGTGCAGCTGCT---CCCACAATGGCGGCG---GCTCGGGAGGAGGAGTAGGAGGAGGAG------CAGG---------ATCTGGA---GCAGGAGCAGGCAGCGGG------GCGAACGGCAGCAGCAGCA---G---------------------------CAGTGGC------AATGGG------------------------------GCCGGGGCAGGCGGAGGCACCACCATCTCAAC---C---CA------------TCAGCATCAGAATC---AGCACCATCAT------CACCATCAGAACCAAAACCTGAATCAGAATCA------GAATCAGCATCTGCATCAGCACCACCAGTTGCAG---CAGC----------------------------------------AGCACCACCACCAACCCACGTCCA---------AACCG---------------------CTGCAGCATCTGTCG---------C------A
droBip1	scf7180000395553:7744-7999 -		CAGTATCACCG-------------------------------CTCCAGCAACAACAGCAACACCAACA--GCAGCAG---CAGCAACAGCAACAGCAGCAGCAA---------CAGC---------------A---ACAGCA---GCAGGCACAGCAACAGCAG-------CAGGCACA---G---------------------------CAACAGC------AGC--A------------------------------GGCACAGCAGCCG----C-------------------------------A------------ACAGC---ACCACCCACAACAACAACAACAACA---------------ACAGCAGCAA---------TCACAACA------------ACATAAGCAA---CAAC---------AGCA-GCAACTTCTCCAACAAAAGCAACAGCAGCAGCAG---------------------------CAACA------------------GCAACATCAGGCCCTG---------C------A
dp5	3:9944983-9945280 +		CCAT--CGG---------------------------------CCCCGAGTGCAGCTGCTCCTCCCACAACGGGATAG---TTGGCGTAGGAAGAGGTGGAGGAG---------GAGTAGCAGGAGGAGGCGGAGGTGGAGGT---GGAGGCGGG------GCAAACGGTAGCAGCAGCG---G---------------------------A------------GGCGGTGGCAGTGCCCAATATGGAGCCGGAGTCGCAGTCGGAGTCGGAG---GAG------G---CAA---TCATCA------------CCAGCAGCCCCACA---CCCACACCCAC------CATCATCA---------------TTACCATCA---------ACTGCAGCAGCAGCAACAGCAGCATCCACAGCCAC----------------------------------------AGCTACAACCAC---------------------------AGCA------------------AGCACATCAGCAATCG---------C------A
droPer2	scaffold_4:5263247-5263553 +		CCAT--CGG---------------------------------CCCCGAGTGCAGCTGCTCCTCCCACAACGGGATAG---TTGGCGTAGGAAGAGGTGGAGGAG---------GAGTAGCAGGAGGAGGCGGAGGTGGAGGT---GGAGGCGGG------GCAAACGGTAGCAGCAGCG---G---------------------------A------------GGCGGTGGCAGTGCCCAATATGGAGGCGGAGTCGCAGTCGGAGTCGGAG---GAG------G---CAA---TCATCA------------CCAGCAGCCCCACACCCACCATCATCAT------TATCAT------------------------CA---------ACTGCAGCAGCAGCAACAGCAGCATCCACAGCCAC----------------------------------------AGCTACAACCAC---------------------------AGCA------------------AGCACATCAGCAATCGCATCAGCATCCACAGCA
droWil2	scf2_1100000004888:1009804-1010051 -		CAAC--AACAGC----A----------------------------GCAG--CAACAACAACAACAG-----CAGCAG---CAACAACAACAGCAGCAACAACAG------------C----------------------------------------------------AGCAGCAGCA---ACAGCAACAACAGCAGCAGCAACAACAAC---AGCAGCAACAA-------------------------------------------------------------------------CAACAGCAGCA------GCAGCAACAGC---AACAACAGCAGCAGCAACAACAACAGCA---------------GCAACAACA---ACAGCA---GC------AGCAACAA------------CAGC---------AACA-GCAACAACAACAGCAGCAGC---A---ACAGCAAC------------------------AGCAACA------------------ACAGCAGCAGCAGCAG---------C------A
droVir3	scaffold_13052:1898159-1898411 -		CAGT--CGCAGC----A----------------------------GCAGCACAGCAACATCAACAGCAAC--AGCAA---CAGCCGCAGCAGCAGCAGCAGCAG---------CAGC---------------A---GCAG---------------CAGCAGTAATTAGCTGCAGCAGCA---G------------------------CAGC---AGCAGCAGCAG---------------------------------------------------------TAA---TTAGCTGC------------AGCAGCA------GCAGC---CGCAGCAGCAGCAGCAGCCGCAGCA---------------GCAGCAGCA---------GCCGCAGCAGCAGCAGCAGCAGT------------------------AGTAATTAGCTGCAGCAGCAACAGC---C---GCAGCAG------------------------CAGCAGCA------------------GCCGCAGCAGCAGCCG---------C------A
droMoj3	scaffold_6473:11064734-11064984 -		CACC--CTCAGCAG----------------------------CAGCA---ACAGCAGCAGCAACAACA--GCAGCAG---CAGCAACAGCAGCAGCAGCAGCAA---------CAAC---------------A---GCAGCA---GCAACAACAGCAGCAG----------------------------------------CAACAACAGC---AGCAGCAACAG-------------------------------------------------------------------------CAGCAGCAGCA---ACAGCA---GCAGC---AGCAGCAGCAGCAGCAGCAGCAGCAGCA---------------GCAGCAGCA---GCAGCA------------------GCAGCAGCAG---CAGC---------AGCA-GCAGCAGCAGCAGCAGCAGC---A---GCAGCAG------------------------CAGCAGCA------------------ACAGCAGCAGCAGCAA---------C------A
droGri2	scaffold_16898:603-836 -		GCAG--CAG---------------------------------CAGCAGCAGCAGCGGCAGCAGC-----------------AGCAGC------------------------------------------------------A---GCAGC-------------AGCGGCAGCAGCAGCA---GCAGCAGCGGCAGCAGCAGCAGCGGCAGC---AGCAGCAGCAG-------------------------------------------------------------------------CAGCGGCAGCA---GCAGCA---GCAGC---AGCGGCAGCAGCAGCAGCAGCAGCAGCG---------------GCAGCAGCA---GCAGCA------------------GCAGCGGCAG---CAGC---------AGCA-GCAGCAGCGGCAGCGGCAGC---AGCAGCAGC---------------------------AGCAGCA------------------GCAGCGGCAGCGGCAG---------C------A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGAGGAG---CCGCCGGAGGAGGAGGAGGAGGAG---------TAGG---------------A---GTAGGA---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---------------------------------------------GCGGA------------------------------GGCGCAGCAGTCG---GCA------C---CAC---TCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------TCTGCATCAGCATCAGCCCCATCAATTGCCG---C----------------------------------------AGCAGCAGCAGC---------------------------AGCA------------------GGCACATCAGGCGGCA---------C------A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................AGCA---------------------------------------------GCGGA------------------------------GGCGCAGCAGTCG---GC.......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CGGA------------------------------GGCGCAGCAGTCG---GC.......................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................AGGAGGAGGAGGAGGAG---------TAGG---------------........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................GAGGAGGAGGAGGAGGAG---------TAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................CGGAGGAGGAGGAGGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGAGGAG---CCGCCGGAGGAGGAGGAGGAGGAG---------TAGG---------------A---GTAGGA---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---------------------------------------------GCGGA------------------------------GGCGCAGCAGTCG---GCA------C---CAC---TCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------TCTGCATCAGCATCAGCCCCATCAATTGCCG---C----------------------------------------------AGCAGC---------------------------AGCA------------------GGGACATCAGGCGGCA---------C------A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................................................................AGCAGCAGCA---------------------------------------------GCGGA------------------------------GGCGCAGCA................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
.............................................................................................AGGAGGAGGAG---------TAGG---------------A---GTAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0
.......................................................................................AGGAGGAGGAGGAGGAG---------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	18	0.06	1	0	0	1	0

dm3

CACT--CGG---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGAGGAG---CCGCCGGAGGAGGAGGAGGAGGAG------GAGTTGG---------------A---GTAGGA---GCAGGCGGAGCAGCCGCGAACGGCAGCAGCAGCA---G---------------------------C------------AGCGGA------------------------------GGCGCAACAGTCG---GCA------C---CAC---TCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------TCTGCATCAGCATCAGTCCCATCAATTGCCG---C----------------------------------------AACAGCAGCAGC---------------------------AGCA------------------GTCACATCAGGCGGCA---------C------A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................CCA---------------TCCGAATCA---------TCTGCATCAGCATCAG.........................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CACCA---------------TCCGAATCA---------TCTGCATCAGCAT............................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CACCA---------------TCCGAATCA---------TCTGCA...................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................ACAGTCG---GCA------C---CAC---TCATCA------------TCAGCA..............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................GTTGG---------------A---GTAGGA---GCAGGCGGAGC................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCCG---C----------------------------------------AACAGCAGCAGC---------------------------AGCA------------------GTC..............................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CCGAGTGCAGCTGCTCCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AGCA---G---------------------------C------------AGCGGA------------------------------GGCGCAACAGTC.............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................GAGGAG---CCGCCGGAGGAGGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................CCAACAGC---ACCACCAGCAT------CA................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................GCAGCA---G---------------------------C------------AGCGGA------------------------------GGCGCA...................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TCCGAATCA---------TCTGCATCAGCATA...........................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AGCA---G---------------------------C------------AGCGGA------------------------------GGCGCAA..................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................AGGAG---CCGCCGGAGGAGGAGGAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CACT--CGG---------------------------------CGCCGAGTGCAGCTGCTCCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................................GCACCAACAGC---ACCACCAGCAT------..................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................GCCGGAGGAGGAGGAGGAGGAG------GAGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................GGAGGAGGAGGAG------GAGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................AGGAGGAGGAG------GAGTTGG---------------........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CAGCAGCA---G---------------------------C------------AGCGGA------------------------------GGC......................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................GCCGGAGGAGGAGGAGGAGGAG------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC---------------------------AGCA------------------GTCACA...........................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CGCCGGAGGAGGAGGAGGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC---------------------------AGCA------------------GTC..............................	19	8	0.25	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CCGGAGGAGGAGGAGGAGGAG------GAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CCGGAGGAGGAGGAGGAGGAG------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................CAATGGAGGAG---CCGCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GAGGAGGAGGAGGAGGAG------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................GCAGCAGCA---G---------------------------C------------AGCGGA------------------------------G........................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................................................................................................................................................................................CCG---C----------------------------------------AACAGCAGCAGC---------------------------AGCA------------------G................................	21	15	0.13	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CCGGAGGAGGAGGAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................GGCAGCAGCAGCA---G---------------------------C------------AGCGG........................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC---------------------------AGCA------------------GT...............................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................AGGAGGAGGAGGAG------GAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................GGAGGAGGAGGAGGAGGAG------GAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................AGGAGGAGGAGGAGGAG------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GAGGAGGAGGAGGAG------GAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................AGGAGGAGGAGGAGGAG------GA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................GGAGGAGGAGGAGGAGGAG------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................GAGGAGGAG------GAGTTGG---------------A---C...................................................................................................................................................................................................................................................................................................................................................................................................................................	18	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GAGGAGGAGGAGGAGGAG------GAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ACGGCAGCAGCAGCA---G---------------------------C------------AGC..........................................................................................................................................................................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................CGGAGGAGGAGGAGGAGGAG------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................CGGAGGAGGAGGAGGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................GGAGGAGGAGGAGGAG------GA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................AGGAGGAGGAGGAG------GAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CG---C----------------------------------------AACAGCAGCAGC---------------------------AGCA------------------.................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGAGGAG---CCGCCGGAGGAGGAGGAGGAGGAG------------G---------------A---GTAGGA---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---G---------------------------C------------AGCGGA------------------------------GGCGGAGCAGTCG---GCA------C---CAC---TCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------TCTGCATCAGCATCAGCCTCATCAATTGCCG---CCGC-------------------------------------AGCAGCAGCAGC---------------------------AGCA------------------GGCACATCAGGCGACG---------C------A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................................................................................................................................................................................................................................................CA---------------TCCGAATCA---------TCTGCATC.................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCCTCATCAATTGCCG---CCGC-------------------------------------..............................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
..........................................................................GAG---CCGCCGGAGGAGGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................G---CCGC-------------------------------------AGCAGCAGCAGC---------------------------AGCA------------------.................................	21	20	0.05	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CCG---CCGC-------------------------------------AGCAGCAGCAGC---------------------------.......................................................	19	20	0.05	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGC---------------------------AGCA------------------GGC..............................	19	20	0.05	1	0	0	0	0	0	1	0
...................................................................................................................................................................AACGGCAGCAGCAGCA---G---------------------------C------------.............................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0

droYak3

CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGCGGAG---CCGCCGCCGGAGGAGGTGGAGGAGGAGGAGGAGGAGG---------------A---GTTGGA---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---G---------------------------CAACAGC------AGCGGA------------------------------GGCGGAGCAGTCG---GCA------C---CAC---TCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCATCA---------------TCCGAATCA---------TCTGCATCAGCATCAGTCTCATCAATTGCCG---CAGC----------------------------AGCAGC---A---GCAACAG------------------------CAGCAGCA------------------AGCACATCAGGCGGCA---------C------A	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................GAGGTGGAGGAGGAGGAGGAGGAGG---------------A---G...................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0
............................................................................................GAGGTGGAGGAGGAGGAGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................GGAGGTGGAGGAGGAGGAGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................GGTGGAGGAGGAGGAGGAGGAGG---------------........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................GAGGAGGTGGAGGAGGAGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................AACGGCAGCAGCAGCA---G---------------------------C.........................................................................................................................................................................................................................................................................................................................................................	18	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC----------------------------AGCAGC---A---GCAACAG------------------------CAGC.......................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................GTGGAGGAGGAGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CAGCAGCAGCA---G---------------------------CAACAGC------AGC..........................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGAGGAG---CCGCCGGAGGAGGAGGAGGAGGAG------------G---------------A---GT---A---ACAGGCGGGGCACCCGCGAACGGCAGCAGCAGCAACAG---TGGCGGC------GGCAGCAACAGC---GGC------AGCGGA------------------------------GGCGGAGCAGTCG---GCA------C---CAC---CCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------TTCGCATCAGCATCAGCTGCATCAAATGCCG---CAGC----------------AGCAGCCGCA---------------GCAACAGC------AGCAGGCAC---------ATCAACA------------------GCAACATCAGGCGGCA---------C------A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAACGGAGGGG---CCGCCGGAGGAGGAGCTGGAGGAG------------------------------------GA---GCAGGCGGGGCAGCAGCGAACGGCAGCAGCAGCG---G---------------------------C---GGC------AGCGGA------------------------------GGCGGAGCAGTCG---GCA------C---CAC---CCATCA------------TCAGCACCAACAGC---ACCACCAGCATCAGCATACCCACCA---------------TCCGAATCACCC---GCATCCGCATCAGCATCAGCAACATCAACTGCCG---CCGC----------------------------AGCAGC---AACAGCAGCAG---------------------------CAGCA------------------GCAACATCAGGCGGCA---------C------A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAACGGAGGGG---CCGCCGGAGGAGGAGGAGCAGGAG---------GAGC---------------A---GTAGGA---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---G---------------------------CAGCA---------GCGG------------------------------------------CG---GCACCAGCAC---CCACCATCATCA------------ACAGCACCTACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------CCCGCATCCGAATCAGCAACATCAAATGCCG---CAAC---------AGCA-AC---------------------CGCCGCAGCAGC------AGGCGGCTC---------ATCAGCA------------------GCATCATCAGGCGGCT---------CAGCAGCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAACGGAGGAG---CCGCCGGAGTAGGAGTAGGAGTAGGAGGAGGAGGAGG---------------A---GGAGGA---GCAGGCGGGGCAGCTGCGAACGGCAGCAGCAGCA---G---------------------------CAGCGGC---------GGC---GG---------------------CGCTGGCGGAGCAGTCG---GCA------C---CAC---CCATCA------------TCAGCACCACCAAC---ACCACCAGCAT------CACCACCA---------------TCCGAATCATCCGAATCACCTGCATCAGCATCAGCAACATCCATTGCCG---CAGCAGCAACAGCAGCA-GGCGC------------------AACAGCAGCAGC------AGCAGGCGCATC---AGCAGCAGCA------------------GCAGCAGCAGGCGGCA---------C------A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CACT--CGC---------------------------------CGCCGAGTGCAGCTGCTCCTCCCACAATGGAGGAG---CCGCCGGAGGAGGAGGAGGAGGTGGAG------GTGG---------AAGTGGAAGTGGAGGA---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---G---------------------------C---GGC------AGCGGA------------------------------GGCGGAGCAGTCG---GCA------C---CAC---CCATCA------------TCAGCACCAACAGC---ACCACCAGCAT------CACCACCA---------------TCCGAATCA---------TCCGCATCAGCATCAGCAACATCAATTGCCG---CCGC-------------------------------------AGCAGCACCAACAGCAGCCGGCGGCAC---------ATCAGCA------------------GCAGCACCAGGCGGCA---------C------A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CACT--CGC---------------------------------CGCCGAGTGCAGTTGCGCCTCCCACAATGGAGGAGGGGCCACCGGGGGAGGAGGAGGAGGTG---GAGGAGTGTC---------------A---GGCGTT---GCAGGCGGGGCAGCCGCGAACGGCAGCAGCAGCA---G------T---------GGCAGCAA---C------------AGCGGC------------------------------AGCGGAGCAGTCG---GCA------G---CAC---CCATCA------------TCAGCACCATCAGC---------AGCAT------CACCACCA---------------TCCGAATCA---------CCCGCATCAGCATACGCAACATCAAATGCAG---CAGT---------CGC-------------------------AGCAGCAGCAGC------AAGTGGCACATCCCCTCCAGCAGCA------------------GCAACATTTGGCGGCA---------C------A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CACT--ACT-G--GCCAGCACAACCAGCGGCGGCGGCGGCTCCACCGAATGCAGCTGCTCCTCCCACAATGGAGCAG---CGGCTGTGGGAGGAGGCGTCGGAG---GAGGAGGTGG---------------A---GCGGGA---GCAGGCGGGGCGGCGGCAAACGGCAGCGGCAGCA---G---------------------------C---------------GGA------------------------------GGCGGAGTCGCAG---GCACCAGCAC---CAC------CCA------------TCAGCACCATCAGC---ACCACCAGCAT------CACCACCA---------------GCTTCACCA---------TCCCAATCCGAATCACCACCATCAG---CAG---C----------------------------------------AACAGCAGCAGC------AGCAGAATCATC---AGCATCTGCCCGCTCAGGCTCAGGCTCAGGCCCAGCTACAGCAG---------C------A	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CACT--CGG---------------------------------CGCCGAGTGCAGCTGCT---CCCACAATGGCGGCG---GCTCGGGAGGAGGAGTAGGAGGAGGAG------CAGG---------ATCTGGA---GCAGGAGCAGGCAGCGGG------GCGAACGGCAGCAGCAGCA---G---------------------------CAGTGGC------AATGGG------------------------------GCCGGGGCAGGCGGAGGCACCACCATCTCAAC---C---CA------------TCAGCATCAGAATC---AGCACCATCAT------CACCATCAGAACCAAAACCTGAATCAGAATCA------GAATCAGCATCTGCATCAGCACCACCAGTTGCAG---CAGC----------------------------------------AGCACCACCACCAACCCACGTCCA---------AACCG---------------------CTGCAGCATCTGTCG---------C------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................GAGGAGTAGGAGGAGGAG------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................GGCAGGCGGAGGCACCAC..................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
............................................................................G---GCTCGGGAGGAGGAGTAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAGC----------------------------------------AGCACCACCACC...............................................................................	20	20	0.05	1	0	0	0	0	0	1

droBip1

CAGTATCACCG-------------------------------CTCCAGCAACAACAGCAACACCAACA--GCAGCAG---CAGCAACAGCAACAGCAGCAGCAA---------CAGC---------------A---ACAGCA---GCAGGCACAGCAACAGCAG-------CAGGCACA---G---------------------------CAACAGC------AGC--A------------------------------GGCACAGCAGCCG----C-------------------------------A------------ACAGC---ACCACCCACAACAACAACAACAACA---------------ACAGCAGCAA---------TCACAACA------------ACATAAGCAA---CAAC---------AGCA-GCAACTTCTCCAACAAAAGCAACAGCAGCAGCAG---------------------------CAACA------------------GCAACATCAGGCCCTG---------C------A	Size	Hit Count	Total Norm	Total
No Reads

dp5

CCAT--CGG---------------------------------CCCCGAGTGCAGCTGCTCCTCCCACAACGGGATAG---TTGGCGTAGGAAGAGGTGGAGGAG---------GAGTAGCAGGAGGAGGCGGAGGTGGAGGT---GGAGGCGGG------GCAAACGGTAGCAGCAGCG---G---------------------------A------------GGCGGTGGCAGTGCCCAATATGGAGCCGGAGTCGCAGTCGGAGTCGGAG---GAG------G---CAA---TCATCA------------CCAGCAGCCCCACA---CCCACACCCAC------CATCATCA---------------TTACCATCA---------ACTGCAGCAGCAGCAACAGCAGCATCCACAGCCAC----------------------------------------AGCTACAACCAC---------------------------AGCA------------------AGCACATCAGCAATCG---------C------A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................GAGGCGGAGGTGGAGGT---GGAGGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................	25	5	15.80	79	0	0	0	0	0	0	0	3	66	10
.............................................................................................................................GAGGCGGAGGTGGAGGT---GGAGGCGGG------G...........................................................................................................................................................................................................................................................................................................................................................................................................	27	2	2.00	4	0	0	0	0	0	0	0	0	3	1
..........................................................................................................................GAGGAGGCGGAGGTGGAGGT---GGAGGCG....................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	1.50	3	0	0	0	1	0	0	2	0	0	0
..............................................................................................................................AGGCGGAGGTGGAGGT---GGAGGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	1.50	9	0	0	0	0	0	0	0	0	9	0
....................................................................ACGGGATAG---TTGGCGTAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
................................................................................................................................GCGGAGGTGGAGGT---GGAGGCGGG------GC..........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................GTGGAGGT---GGAGGCGGG------G...........................................................................................................................................................................................................................................................................................................................................................................................................	18	2	1.00	2	0	1	0	0	0	0	1	0	0	0
.......................................................................................................................CAGGAGGAGGCGGAGGTGGAGGT---GGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................GCAGCAGCG---G---------------------------A------------GGCGGTGG.....................................................................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................GCGGAGGTGGAGGT---GGAGGCGGG------G...........................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................GAGGCGGAGGTGGAGGT---GGAGGCGGG------............................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................AGGCGGAGGTGGAGGT---GGAGGCGGG------G...........................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................GAGGCGGAGGTGGAGGT---GGAGGCGGG------T...........................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	1	0	0
................................................................................................................................GCGGAGGTGGAGGT---GGAGGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.33	3	0	0	0	0	0	0	0	0	3	0
.................................................................................................................................CGGAGGTGGAGGT---GGAGGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.25	3	0	0	0	0	0	0	0	0	2	1
............................................................................................................................GGAGGCGGAGGTGGAGGT---GGAGGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................GTGGAGGT---GGAGGCGGG------GCC.........................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................GAGGCGGAGGTGGAGGT---GGAGGCG....................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................GGAGGCGGAGGTGGAGGT---GGAGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................GAGGCGGAGGTGGAGGT---GGAGGCGGT------............................................................................................................................................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................GGCGGAGGTGGAGGT---GGAGGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................AGTCGCAGTCGGAGTCGGA.............................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAGCATC...............................................................................................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................GGAGGCGGAGGTGGAGGT---GGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCATC...............................................................................................................................................	20	17	0.06	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................GCGGAGGTGGAGGT---GGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................CGGAGGTGGAGGT---GGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

CCAT--CGG---------------------------------CCCCGAGTGCAGCTGCTCCTCCCACAACGGGATAG---TTGGCGTAGGAAGAGGTGGAGGAG---------GAGTAGCAGGAGGAGGCGGAGGTGGAGGT---GGAGGCGGG------GCAAACGGTAGCAGCAGCG---G---------------------------A------------GGCGGTGGCAGTGCCCAATATGGAGGCGGAGTCGCAGTCGGAGTCGGAG---GAG------G---CAA---TCATCA------------CCAGCAGCCCCACACCCACCATCATCAT------TATCAT------------------------CA---------ACTGCAGCAGCAGCAACAGCAGCATCCACAGCCAC----------------------------------------AGCTACAACCAC---------------------------AGCA------------------AGCACATCAGCAATCGCATCAGCATCCACAGCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................CAGGAGGAGGCGGAGGTGGAGGT---GGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................CAGGAGGAGGCGGAGGTGGAGGT---GGA........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................GAGGAGGCGGAGGTGGAGGT---GGAGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................GAGGAGGCGGAGGTGGAGGT---GGAGGCG....................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................GGAGGAGGCGGAGGTGGAGGT---GG.........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................GAGGTGGAGGT---GGAGGCGGG------C...........................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................CGGAGTCGCAGTCGGAGTC................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	1	0	0	0
.............................................................................................................................GAGGCGGAGGTGGAGGT---GGA........................................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	1
.............................................................................................................................GAGGCGGAGGTGGAGGT---GG.........................................................................................................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	1
...........................................................................................................................AGGAGGCGGAGGTGGAGGT---GGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	25	12	0.08	1	0	0	0	0	0	1

droWil2

CAAC--AACAGC----A----------------------------GCAG--CAACAACAACAACAG-----CAGCAG---CAACAACAACAGCAGCAACAACAG------------C----------------------------------------------------AGCAGCAGCA---ACAGCAACAACAGCAGCAGCAACAACAAC---AGCAGCAACAA-------------------------------------------------------------------------CAACAGCAGCA------GCAGCAACAGC---AACAACAGCAGCAGCAACAACAACAGCA---------------GCAACAACA---ACAGCA---GC------AGCAACAA------------CAGC---------AACA-GCAACAACAACAGCAGCAGC---A---ACAGCAAC------------------------AGCAACA------------------ACAGCAGCAGCAGCAG---------C------A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................AACAACAG-----CAGCAG---CAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	4	0
.......................................................................................................................................................................................................................GCAGCAACAA-------------------------------------------------------------------------CAACAGCA..........................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
..................................................................................................................................................................................................................................................................................................................................................................GCA---------------GCAACAACA---ACAGCA---...................................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
..AC--AACAGC----A----------------------------GCAG--CAACAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	2
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------AACA-GCAACAACAACAGCAGCA...................................................................................................	25	20	0.10	2	0	2	0	0	0
............................................................................................CAGCAACAACAG------------C----------------------------------------------------AGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
................................................................................CAACAACAACAGCAGCAACAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---A---ACAGCAAC------------------------AGCAACA------------------ACAGCAGCA........................	28	10	0.10	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................ACA---ACAGCA---GC------AGCAACAA------------C......................................................................................................................................	20	20	0.10	2	0	0	0	0	2
.................................................................................................................................................................................................................AC---AGCAGCAACAA-------------------------------------------------------------------------CAACAGCA..........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------AACA-GCAACAACAACAGC.......................................................................................................	20	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGC---A---ACAG......................................................................................	22	20	0.05	1	0	0	0	1	0
........................................................................................ACAGCAGCAACAACAG------------C----------------------------------------------------AGCA...............................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------------------AGCAACA------------------ACAGCAGCAGC......................	22	20	0.05	1	0	0	0	1	0
....................................................................................AACAACAGCAGCAACAACAG------------C----------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................ACAGCA---------------GCAACAACA---ACAGCA---...................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAACA.............................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---A---ACAGCAAC------------------------AGCAACA------------------ACAGCAGCAGCA.....................	29	20	0.05	1	0	0	1	0	0
................A----------------------------GCAG--CAACAACAACAACAG-----CAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.....................................................................................................CAG------------C----------------------------------------------------AGCAGCAGCA---ACAGCA................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
..............................................CAG--CAACAACAACAACAG-----CAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
..................................................................................................CAACAG------------C----------------------------------------------------AGCAGCAGCA---ACAGCAA...............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................CAAC---AGCAGCAACAA-------------------------------------------------------------------------CAACAGCAGC........................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.......................................................AACAACAACAG-----CAGCAG---CAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.....................................................................................ACAACAGCAGCAACAACAG------------C----------------------------------------------------AGC................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
..............................................................................................GCAACAACAG------------C----------------------------------------------------AGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.......................................................AACAACAACAG-----CAGCAG---CAACAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	1	0
...........C----A----------------------------GCAG--CAACAACAACAACAG-----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
................................................G--CAACAACAACAACAG-----CAGCAG---CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGC---A---ACAGCA....................................................................................	22	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................CA---ACAGCAACAACAGCAGCAGCAACAA.............................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGC---A---ACA.......................................................................................	21	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................CAGCAGCA------GCAGCAACAGC---A..................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
........................................................................................ACAGCAGCAACAACAG------------C----------------------------------------------------AGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..........................................................AACAACAG-----CAGCAG---CAACAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
.................................................................................................ACAACAG------------C----------------------------------------------------AGCAGCAGCA---ACAGC.................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................CAGCA---ACAGCAACAACAGCAGCAGCAA................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................GCAGCA---ACAGCAACAACAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGC---A---A.........................................................................................	19	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................GCAGCAACAGC---AACAACAGCAGCAGC....................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................CA------GCAGCAACAGC---AACAACAGCAG........................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................AACAGC---AACAACAGCAGCAGCAA..................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.........................................................CAACAACAG-----CAGCAG---CAACAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................CAGCAACAGC---AACAACAGCAGCAGCAA..................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................CAGCAGCA---ACAGCAACAACAGCAG......................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------------------AGCAACA------------------ACAGCAGCAGCA.....................	22	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AGCA---------------GCAACAACA---ACAGCA---G..................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................A---ACAGCAACAACAGCAGCAGCAACA..............................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...............................................AG--CAACAACAACAACAG-----CAGCAG---CAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------------------AGCAACA------------------ACAGCAGCAGCAGCAG---------........	27	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------------------AGCAACA------------------ACAGCAGCAGCAG....................	24	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................CAGCAGCAGCAACAACAAC---AGCAGCA...............................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC------------------------AGCAACA------------------ACAGCAGCAGC......................	25	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGC---A---A.........................................................................................	20	20	0.05	1	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................CAACAGC---AACAACAGCAGCAGCAACAA...............................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................CAACAACA---ACAGCA---GC------AGC........................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAACAACAGCA---------------GCA.....................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1
......................................................................................................................................................................................................................AGCAGCAACAA-------------------------------------------------------------------------CAACAGCAG.........................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-GCAACAACAACAGCAGCA...................................................................................................	22	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................AACAGC---AACAACAGCAGCAGCAACA................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................A---ACAGCAACAACAGCAGCAGCAA................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................GCAACAA-------------------------------------------------------------------------CAACAGCAGCA------GCAGCA...........................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................AACA---ACAGCA---GC------AGCAACAA------------.......................................................................................................................................	20	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................AACAGCAGCAGCAACAACA...........................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-GCAACAACAACAGCAGCAGC---A---..........................................................................................	25	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................A---ACAGCA---GC------AGCAACAA------------CAGC---------AACA-.....................................................................................................................	25	20	0.05	1	0	0	1	0	0
CAAC--AACAGC----A----------------------------GCAG--CAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0

droVir3

CAGT--CGCAGC----A----------------------------GCAGCACAGCAACATCAACAGCAAC--AGCAA---CAGCCGCAGCAGCAGCAGCAGCAG---------CAGC---------------A---GCAG---------------CAGCAGTAATTAGCTGCAGCAGCA---G------------------------CAGC---AGCAGCAGCAG---------------------------------------------------------TAA---TTAGCTGC------------AGCAGCA------GCAGC---CGCAGCAGCAGCAGCAGCCGCAGCA---------------GCAGCAGCA---------GCCGCAGCAGCAGCAGCAGCAGT------------------------AGTAATTAGCTGCAGCAGCAACAGC---C---GCAGCAG------------------------CAGCAGCA------------------GCCGCAGCAGCAGCCG---------C------A	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGCAGCAACAGC---C---GC........................................................................................	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AC--AGCAA---CAGCCGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAGCA---------------GCAGCAGCA---------GCCGCAG..................................................................................................................................................................	21	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCCGCAG............................................................................................................................................................................................................	21	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG------------------------CAGCAGCA------------------GCCGCAG..........................	21	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCCGCAGCA---------------GCAGCAGCA---------GCCGC....................................................................................................................................................................	23	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GC---CGCAGCAGCAGCAGCAGCCGC..............................................................................................................................................................................................................	23	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---C---GCAGCAG------------------------CAGCAGCA------------------GCCGC............................	23	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGC---C---GCAGCAG------------------------...........................................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGC---C---GCAGCAG------------------------...........................................................	20	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................ACAGCAACATCAACAGCAAC--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------------------GCCGCAGCAGCAGCCG---------........	21	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................ATCAACAGCAAC--AGCAA---CAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................AGCAGCAG---------CAGC---------------A---GCAG---------------CAGCAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------GCCGCAGCAGCAGCC..................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---------GCCGCAGCAGCAGCAGCA.......................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CAGCA---G------------------------CAGC---AGCAGCAGCAG---------------------------------------------------------T.................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------------------------CAGCAGCA------------------GCCGCAGCA........................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------GCCGCAGCAGCAGC...................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CAACATCAACAGCAAC--AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC---C---GCAGCAG------------------------CAGCAG.....................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................CA---------------GCAGCAGCA---------GCCGCAGCA................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC---C---GCAGCAG------------------------CAGCAGC....................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AGCAACATCAACAGCAAC--A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................CAGCAGCAGCAGCAG---------CAGC---------------A---GCAG---------------CAGCA............................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................AGCA---------GCCGCAGCAGCAGC...........................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCCGCAGCA---------------...........................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................C------------AGCAGCA------GCAGC---CGCAGCA............................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................A------GCAGC---CGCAGCAGCAGC.......................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AGCAGCCGCAGCA---------------GCAGC......................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................C------------AGCAGCA------GCAGC---CGCAGCAG...........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CACC--CTCAGCAG----------------------------CAGCA---ACAGCAGCAGCAACAACA--GCAGCAG---CAGCAACAGCAGCAGCAGCAGCAA---------CAAC---------------A---GCAGCA---GCAACAACAGCAGCAG----------------------------------------CAACAACAGC---AGCAGCAACAG-------------------------------------------------------------------------CAGCAGCAGCA---ACAGCA---GCAGC---AGCAGCAGCAGCAGCAGCAGCAGCAGCA---------------GCAGCAGCA---GCAGCA------------------GCAGCAGCAG---CAGC---------AGCA-GCAGCAGCAGCAGCAGCAGC---A---GCAGCAG------------------------CAGCAGCA------------------ACAGCAGCAGCAGCAA---------C------A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................................................AGCAA---------CAAC---------------A---GCAGCA---GCA........................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	4	0	0	0	0	0
.....................................................GCAGCAGCAACAACA--GCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CA---------------GCAGCAGCA---GCAGCA------------------GCA.................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.......................................................................................AGCAGCAGCAGCAGCAA---------CAAC---------------A---GCA.................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.......................................................AGCAGCAACAACA--GCAGCAG---CAGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	1	0
........................................................................AGCAG---CAGCAACAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.................................................................................................GCAGCAA---------CAAC---------------A---GCAGCA---GCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
....................................................................................................................C---------------A---GCAGCA---GCAACAACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------CAGCAGCA------------------ACAGCAGCA........................	18	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................AACAGC---AGCAGCAACAG-------------------------------------------------------------------------CAGCAGCAGC........................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................CAGCAGCAG----------------------------------------CAACAACAGC---AGCA..................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................CAG----------------------------------------CAACAACAGC---AGCAGCAACAG-------------------------------------------------------------------------CA................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
.......................................................................................AGCAGCAGCAGCAGCAA---------CAAC---------------A---GCAGCA---...........................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
................................................................................CAGCAACAGCAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
................................................................AACA--GCAGCAG---CAGCAACAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
............................................GCA---ACAGCAGCAGCAACAACA--GCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------------ACAGCAGCAGCAGCAA---------C------A	21	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAGCAG------------------------CAGCAGCA------------------ACAGCAGCA........................	25	20	0.05	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................CAGCA---------------GCAGCAGCA---GCAGCA------------------....................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1

droGri2

GCAG--CAG---------------------------------CAGCAGCAGCAGCGGCAGCAGC-----------------AGCAGC------------------------------------------------------A---GCAGC-------------AGCGGCAGCAGCAGCA---GCAGCAGCGGCAGCAGCAGCAGCGGCAGC---AGCAGCAGCAG-------------------------------------------------------------------------CAGCGGCAGCA---GCAGCA---GCAGC---AGCGGCAGCAGCAGCAGCAGCAGCAGCG---------------GCAGCAGCA---GCAGCA------------------GCAGCGGCAG---CAGC---------AGCA-GCAGCAGCGGCAGCGGCAGC---AGCAGCAGC---------------------------AGCAGCA------------------GCAGCGGCAGCGGCAG---------C------A	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------AGCA-GCAGCAGCGGCAGCG......................................................................................................	21	20	0.20	4	4	0
...G--CAG---------------------------------CAGCAGCAGCAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0

dsi_1903

2r:15763098-15763247 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-34.6	-34.4	-34.4