ID:

dsi_19017

 Coordinate:

2r:4783124-4783273 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-27.7 -27.6 -27.5 -27.5

Flybase annnotation

exon [2r_4782708_4783123_+]; CDS [2r_4782708_4783123_+]; intron [2r_4783124_4783468_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCGACGCAAAACATTCCGGTTGGAGGCAGCAGCAGCCAAAATAGCACGAGGTAGGACATGTTCCAGTATTGATTGTTTAATATTTAATTCCTAAGGGGGTTACCCTTGCAGAGATTTGTAGTTACATATTTGTCAAATTTCAAAATTATTTGTAAGCAACAACTCGATTTGATTTGAAGATAAACTAACTCTACTCAGCAAGGGTAGAACCCTAATCGAATCTTTTACTTCAAGATTTAAATATTTGTTT
**************************************************........(((...((((......(((((...((((..((..((..(((((...((((((((..((((.(((((((....)))..)))).))))....))))))))....)))))..)).))..))))..)))))......))))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M023
head
....................................................................................................TACCCTTGCAGAGATTTGTAG................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0
.........................................................................................................TTGCAGAGATTTGTAGTTACATATT........................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0
..........ACATTCCGGTTGGAGGCAGCA........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
......CAAAACATTCCGGTTGGAGGC............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0
................................................................................................................................................................................................ACTCAGCAAGGGTTGACC........................................ 18 2 3 0.67 2 0 0 2 0 0 0 0
.............TTCGGGTTGGAGGCACCA........................................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0
...........................................................GGTCCTGTATTGATTGT.............................................................................................................................................................................. 17 2 11 0.18 2 0 0 2 0 0 0 0
....................................................................................................................................................................................................................TAATTGAATCTTTAACTTCGA................. 21 3 8 0.13 1 0 0 0 0 0 1 0
...........GATTCGGGTTGGAGGCACCA........................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 1 0
............ATTCCGGTCTGAGGCACCA........................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 1
............ATTCCGGTTGTAGGCTCCA........................................................................................................................................................................................................................... 19 3 16 0.06 1 0 1 0 0 0 0 0
................................................................................................................................................................................................ACTCAGCAAGGGTTGAC......................................... 17 2 16 0.06 1 0 0 1 0 0 0 0
............................................................................................................................................................................................CTTGACTCAGCAAGGG.............................................. 16 2 17 0.06 1 0 0 1 0 0 0 0
..............TCTGGTTGGAGGCACCA........................................................................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 1 0
......................................................................................................................................................................ATTTGATTTGAAAATAA................................................................... 17 1 20 0.05 1 0 0 0 1 0 0 0
..................................................................................................................................................................................................TCAGCAAGGGTTGACCCG...................................... 18 3 20 0.05 1 0 0 1 0 0 0 0
............ATTCTGGTTGGAGGTAG............................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0
......................................................................................................................................................................ATTTGATTGGAAGAT..................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

CGCTGCGTTTTGTAAGGCCAACCTCCGTCGTCGTCGGTTTTATCGTGCTCCATCCTGTACAAGGTCATAACTAACAAATTATAAATTAAGGATTCCCCCAATGGGAACGTCTCTAAACATCAATGTATAAACAGTTTAAAGTTTTAATAAACATTCGTTGTTGAGCTAAACTAAACTTCTATTTGATTGAGATGAGTCGTTCCCATCTTGGGATTAGCTTAGAAAATGAAGTTCTAAATTTATAAACAAA
**************************************************........(((...((((......(((((...((((..((..((..(((((...((((((((..((((.(((((((....)))..)))).))))....))))))))....)))))..)).))..))))..)))))......))))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
................................................................................................................................................................................................TGAGTCGTTCCCAACTGG........................................ 18 2 3 9.00 27 27 0 0 0
................................................................................................................................................................................................TGAGTCGTTCCCAACT.......................................... 16 1 1 8.00 8 8 0 0 0
.......................................................................................................................................................................................TGATTGAGATGGGTCGTT................................................. 18 1 1 2.00 2 0 2 0 0
...............................................................................................................................................................................................ATGAGTCGTTCCCAACT.......................................... 17 1 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................GAGTCGTTCCAATCT.......................................... 15 1 4 0.50 2 0 2 0 0
...............................................................................................................................................................................................ATGAGTCGTTCCCAACTGG........................................ 19 2 2 0.50 1 1 0 0 0
...............................................................................................................................................................................................ATGAGTCGTTCCCAACTG......................................... 18 2 3 0.33 1 1 0 0 0
................................................................................................................................................................................................TGAGTCGTTCCCAAC........................................... 15 1 6 0.17 1 1 0 0 0
.................................................................................................................................................................................................GAGTCGTTCCCAACTGG........................................ 17 2 7 0.14 1 1 0 0 0
................................................................................................................................................................................................TGAGTCGTTCCCAACTG......................................... 17 2 16 0.13 2 2 0 0 0
.................................................................................................................................................................................................GAGTCGTTCCCAACT.......................................... 15 1 9 0.11 1 1 0 0 0
...................................................................................................................................TAGTTTAAAGTTTTACTACACA................................................................................................. 22 3 9 0.11 1 0 0 0 1
..............AGGCCCACCTCTGTCGT........................................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 1 0
.............................................................................................................................................................................................ACCTGAGTCGTTCCCAACT.......................................... 19 3 11 0.09 1 1 0 0 0
.......................................................................................................................................................................AAACTAAACTTCTACTTAA................................................................ 19 2 20 0.05 1 0 0 1 0

Generated: 04/23/2015 at 03:33 AM