ID:

dsi_19001

 Coordinate:

3l:7932072-7932313 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.5 -3.1 -3.1

Flybase annnotation

exon [3l_7931947_7932071_+]; CDS [3l_7931947_7932071_+]; CDS [3l_7932314_7932410_+]; exon [3l_7932314_7932410_+]; intron [3l_7932072_7932313_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GATAAAACGCCCGAGATTTTGGACTCGGCCCTCAAGGATCTGCCGGATAGGTATGTGAACCGAATCCATATGCGTAGTTGGGAACTTTAAAGATCATGATGAATAGCTAAAGCTCGATATGGAAGTGATGATTCAAAAATATTTTATTGAAGTGCGAATTTTATAAATCCGACAGTATGAGTATGAGTGCGTTCCAAAAATAATCCATATCCACAGCTGTCTACAGTTGGCGAACAAATATTCAAAGTAAATATGTACAATTACAAACAATTATTTTTTGTGCATTCCACAGATGGAAGAATTGGGTGATTCGCGGAATCTTCACATGGATTATGATCTGCG
***************************************************************************************************************************.......(((((....((((((((((...((.((.((....)).)))).))))).)))))))))).********************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
................................................................................................................................................................................................................................................................................................................................TTCACATGGATTGTGAACT... 19 2 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................ATAAATCCGACAGTATGAGTATGAGTG......................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................AGTGATGATTCAAAA............................................................................................................................................................................................................ 15 0 1 1.00 1 0 0 0 0 0 0 1 0
.............AGATTTTGGACTCGGCCCG...................................................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................GAATAGCTAAAGCTCGATAT.............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................ATCCGACAGTATGAGTATGAGT.......................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...................TGGACTCGGCCCTCAAGGATCTGCCGGA....................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................CGGAATCTTCACATGGATTATGATCTGC. 28 0 1 1.00 1 0 1 0 0 0 0 0 0
...........CGAGATTTTGGCCTCGGACC....................................................................................................................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................ATTCGCGGAATCTTCACAT............... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................TCAAGGATCTGCCGG........................................................................................................................................................................................................................................................................................................ 15 0 2 0.50 1 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................ACTGATGGAAGAATTGGGC................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0
..........................................................................TAGTTGGGTACTCTAAAG.......................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 1
..........................................................................TAGTTGGGAACTCTA............................................................................................................................................................................................................................................................. 15 1 5 0.20 1 0 0 0 1 0 0 0 0
.........................................................................TTAGTTGGGAACTCTAATG.......................................................................................................................................................................................................................................................... 19 3 20 0.20 4 0 0 0 3 0 0 0 1
..........................................................................TAGTTGGGAACTCTAATGG......................................................................................................................................................................................................................................................... 19 3 20 0.15 3 0 0 0 2 0 0 0 1
..............................................................................TGGGAACTTTAAGGAT........................................................................................................................................................................................................................................................ 16 1 7 0.14 1 0 0 0 0 0 0 0 1
...............................................TAGGTATGTGAGGCGAACC.................................................................................................................................................................................................................................................................................... 19 3 8 0.13 1 0 0 0 1 0 0 0 0
...........................................................................AGTTGGGTACTCTAAAG.......................................................................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 1 0 0 0 0
..............................................ATAGGTATGCGAAGCGA....................................................................................................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 1 0 0 0 0
..........................................................................TAGTTGGGTACTCTAAAGG......................................................................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 1 0 0 0 0
..........................................................................TAGTTGGGAACTCTAAT........................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0
..........................................................................CAGTTGGGTACTCTAAAG.......................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................AATAGTTGGCCAACAAATATT.................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 1
........................................................................................................................................................................................GAGTGGGTTCCAAAA............................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0
..............................................................................TGGGAACTTTAAGGATA....................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

CTATTTTGCGGGCTCTAAAACCTGAGCCGGGAGTTCCTAGACGGCCTATCCATACACTTGGCTTAGGTATACGCATCAACCCTTGAAATTTCTAGTACTACTTATCGATTTCGAGCTATACCTTCACTACTAAGTTTTTATAAAATAACTTCACGCTTAAAATATTTAGGCTGTCATACTCATACTCACGCAAGGTTTTTATTAGGTATAGGTGTCGACAGATGTCAACCGCTTGTTTATAAGTTTCATTTATACATGTTAATGTTTGTTAATAAAAAACACGTAAGGTGTCTACCTTCTTAACCCACTAAGCGCCTTAGAAGTGTACCTAATACTAGACGC
*********************************************************************************************************************************************************.......(((((....((((((((((...((.((.((....)).)))).))))).)))))))))).*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
.........GGGCTCTAAAACCTGAGC........................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................ATCTAGCGCTATACCTTCA........................................................................................................................................................................................................................ 19 3 18 0.22 4 0 4 0 0 0 0
...................................................................................TGAAATTGCTAGTACT................................................................................................................................................................................................................................................... 16 1 5 0.20 1 0 1 0 0 0 0
.....................................................................................AGATTTCTAGGACTACTT............................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................TAGGGTGTCTACCATC........................................... 16 2 20 0.10 2 0 0 2 0 0 0
...............................................................................................................................................................................................................................................................................AAAAAAAAAACGCAAGGTGTCT................................................. 22 3 14 0.07 1 0 0 0 1 0 0
..ATTTTGCGGCCACTAGAAC................................................................................................................................................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 1
...........................................................................................................................................................................................................GGGTATAGGTGTCGA............................................................................................................................ 15 1 17 0.06 1 0 0 0 0 1 0

Generated: 04/24/2015 at 10:33 AM