ID:

dsi_18995

Coordinate:

3r:17506550-17506699 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-11.4	-11.3	-11.2

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

CCGAGTTGCAGACATTTTGACAAGCGACAGTCCTTTTTTTTTTATAATTTTTATGTTTTTTTTTTGCGGTTTGGAAAGGGTGTGCCTTTAAGTAGCAAGCGGATTTGGCAAAGGGATGCGGATTGTTATTATATTCATATTTATAAGTCCCCCTTTTCAATAAATATTAATTCTAATAAAGAAAATTATTTTACTTTTAGGTTTCGAAGACCAAAATATTGATGAACTATATTTTTCTACTTGACAAATT *******************************************************************************************************(((.((((((....(((((..((.............))..))))))))))))))...........((((.....))))....*************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	O002 Head	SRR553487 NRT_0-2 hours eggs	M023 head	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis
.........................................................................................................................................................................ATTCTAATAAAGAAAATT...............................................................	18	0	1	14.00	14	8	6	0	0	0	0	0	0	0
..........................................................................................................................................................................TTCTAATAAAGAAAATTA..............................................................	18	0	2	3.00	6	2	4	0	0	0	0	0	0	0
...........................................................................................................................................................................TCTAATAAAGAAAATTAT.............................................................	18	0	2	2.00	4	4	0	0	0	0	0	0	0	0
.........................................................................................................TGGCAAAGGGATGCGGATTGT............................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...AGTTGAAGACATTTTGACAAGGA................................................................................................................................................................................................................................	23	3	1	1.00	1	0	0	1	0	0	0	0	0	0
......................................TTTCAATAATTATTATGTTTTTTTTT..........................................................................................................................................................................................	26	3	4	0.25	1	0	0	1	0	0	0	0	0	0
..GAGTTACAGCCATTTTGAC.....................................................................................................................................................................................................................................	19	2	4	0.25	1	0	0	0	0	1	0	0	0	0
..........................ACAGTCCTTTTCTTTTTACCA...........................................................................................................................................................................................................	21	3	6	0.17	1	0	0	0	0	0	0	1	0	0
................................................................TGCGGTTTCGAAAGG...........................................................................................................................................................................	15	1	6	0.17	1	0	0	0	0	0	1	0	0	0
.....................................................................................................................GCGGATTTTTATTATAT....................................................................................................................	17	1	8	0.13	1	0	0	0	0	0	0	0	1	0
..................................................................................................................CATGCGGATTTTTATTATATA...................................................................................................................	21	3	16	0.06	1	0	0	0	0	0	0	0	0	1
......................................................GTTTTTCTTTTGCGGT....................................................................................................................................................................................	16	1	20	0.05	1	0	0	0	0	1	0	0	0	0

Anti-sense strand reads

GGCTCAACGTCTGTAAAACTGTTCGCTGTCAGGAAAAAAAAAATATTAAAAATACAAAAAAAAAACGCCAAACCTTTCCCACACGGAAATTCATCGTTCGCCTAAACCGTTTCCCTACGCCTAACAATAATATAAGTATAAATATTCAGGGGGAAAAGTTATTTATAATTAAGATTATTTCTTTTAATAAAATGAAAATCCAAAGCTTCTGGTTTTATAACTACTTGATATAAAAAGATGAACTGTTTAA *************************************************************(((.((((((....(((((..((.............))..))))))))))))))...........((((.....))))....*******************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M024 male body	M023 head	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.......................................................................................................................................................................................................CCAAAGCTTCTGGCT....................................	15	1	4	0.75	3	3	0	0	0	0	0
.........................CCGTCAGGAAAAAAAAAA...............................................................................................................................................................................................................	18	1	3	0.33	1	0	1	0	0	0	0
................................................................................................................................................TTCGGGGGGAAAAGTATTTTA.....................................................................................	21	3	6	0.17	1	0	0	1	0	0	0
............................TCAGGAAAAGAAAAAAATTA..........................................................................................................................................................................................................	20	2	7	0.14	1	0	0	0	1	0	0
.........................CTGTAAGGAAAAAAAAAGTA.............................................................................................................................................................................................................	20	2	7	0.14	1	0	0	1	0	0	0
.......................................................AAAAAAAAAATGTCAAACCT...............................................................................................................................................................................	20	2	13	0.08	1	0	0	0	0	1	0
.................ACTGTTCGCTGTCACGG........................................................................................................................................................................................................................	17	2	19	0.05	1	0	0	0	0	1	0
........................................................................................................AGACGTTTCCCTACGCC.................................................................................................................................	17	2	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................AGCCAAGGCTTCTGGTT....................................	17	2	20	0.05	1	0	0	0	0	0	1

Generated: 04/23/2015 at 10:38 PM