ID:

dsi_1895

 Coordinate:

2r:5843150-5843299 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.7 -28.7 -28.7

Flybase annnotation

exon [2r_5843037_5843149_+]; CDS [2r_5843037_5843149_+]; intron [2r_5843150_5843851_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGCAATGTGAACCGTTGCTGGGCATTGATCGCGGATCGGACGCGGATAAAGTAAGTATTTAATTTGACCCACAACCATATAGTATATACATATCATCATGTTCAATTTGATATCTGTACTTTGTGTAGTTGCTGTTCTCGTGCCTGGTTTTGGCTTGAGCAGTTTATATCTCTGTGCAAATTATTTTCGCTGCTTTGCTGGGCGTTTCGTGTTGTGATTTTATGGCGATGAGGAAAATGACAATTTTTAA
**************************************************...(((...(((((((((...((((((((.((((((...((((((............)))))).)))))).))))..))))((((((....(((.......)))..))))))...........)).))))))).....))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 M024
male body		 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553488
RT_0-2 hours eggs
...............TGCTGGGCATTGATCGCGGATC..................................................................................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..................TGGGCATTGATCGCGGATCGGACGCGGA............................................................................................................................................................................................................ 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........ACCGTTGCTGGGCATTGATCGCGGAT...................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGTTGTTCCTGTTCTCGTGCCT......................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................GTGTAGTTGCTGTTCTCGT............................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................GCGGATCCGACGCGGACA.......................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
........................................CGCGGATGAAGTAATTATT............................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.......TGAACCGTGGCTGGGCA.................................................................................................................................................................................................................................. 17 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0
..........................GATCGACGATCGGACGC............................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0
.........................................................TTTAATTTGACGCACCAC............................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................AATTTGAAATCTGTACCT................................................................................................................................. 18 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................TGATTTTGTGACGATGAGAAA............... 21 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0
................GCTCGGCATTGATCCCGGC....................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................TGTAGTCGTGCCTGGT...................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCGTTACACTTGGCAACGACCCGTAACTAGCGCCTAGCCTGCGCCTATTTCATTCATAAATTAAACTGGGTGTTGGTATATCATATATGTATAGTAGTACAAGTTAAACTATAGACATGAAACACATCAACGACAAGAGCACGGACCAAAACCGAACTCGTCAAATATAGAGACACGTTTAATAAAAGCGACGAAACGACCCGCAAAGCACAACACTAAAATACCGCTACTCCTTTTACTGTTAAAAATT
**************************************************...(((...(((((((((...((((((((.((((((...((((((............)))))).)))))).))))..))))((((((....(((.......)))..))))))...........)).))))))).....))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 M024
male body
...................................................................GGGAGTTGGTATATCA....................................................................................................................................................................... 16 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................TTGGGAGTTGGTATATCA....................................................................................................................................................................... 18 2 2 1.00 2 0 2 0 0 0 0 0 0
....................................................................................ATATGTATAGTAGTA....................................................................................................................................................... 15 0 2 0.50 1 0 0 0 1 0 0 0 0
.................................................................CTGGGAGTTGGTACATCA....................................................................................................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0
.................................................................CTGGGAGTTGGTATA.......................................................................................................................................................................... 15 1 10 0.30 3 3 0 0 0 0 0 0 0
.........................................................................................................AAAATATAGACAAGAAACACTT........................................................................................................................... 22 3 5 0.20 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................AAATACCGCTGCTCCT................ 16 1 5 0.20 1 0 0 0 0 0 1 0 0
..............................................................AAATTGGGAGTTGGTATA.......................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 1 0
..............................................................................................................................................AGACCAAAACCGAACTTG.......................................................................................... 18 2 17 0.06 1 0 0 0 0 0 0 0 1
...........................AAGCGCCTAGCCTGCTC.............................................................................................................................................................................................................. 17 2 18 0.06 1 0 0 0 0 1 0 0 0
..............................................................AAATTGGGAGTTGGTAT........................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 01:09 AM