ID:dsi_18936 |
Coordinate:2r:5566835-5566984 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
exon [2r_5566231_5566834_+]; CDS [2r_5566231_5566834_+]; intron [2r_5566835_5567309_+]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GAGCGATGCTGGGCAGCGAGGACACCAGTTGGGCCTTCGATGGACACAATGTGAGTATGAGGAGGGCAGGGGTCTCCATGCCGAGGGTCATCCATTTGATGTAGGCTAGGGAGGGTTGGAAGGGACTGCGGTAACGCCTAATGCCAGATCGACTCAAACCAAAACCCACAACCCCGTGATTATAGGTGACCAAAATGCACGCCGGATCCATTGAGCACTTCGGAGTGCGGTATGAGGCTGGCGATGTCAT **************************************************((.............(((..((((.((((..((.((((...........(((.((....((.(((((((...((...(((....)))......))...)))))))...))....)).)))))))))..))....)).))))....)))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
M024 male body |
SRR618934 dsim w501 ovaries |
SRR553485 Chicharo_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................GTTGGGCCTTTGATGGA.............................................................................................................................................................................................................. | 17 | 1 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 |
| ...TGATGCTGGGCAACGAGGACA.................................................................................................................................................................................................................................. | 21 | 2 | 2 | 1.50 | 3 | 3 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................GTAGGCTTAGGACGGTTGGAA................................................................................................................................. | 21 | 3 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................CTTCGGAGTGCGGTATGAGGC............ | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ....................................................................................................GTAGGCTCAGGACGGTTGGAA................................................................................................................................. | 21 | 3 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...................................................TGAGGATGAGGAGTGCAGCGGT................................................................................................................................................................................. | 22 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................GTAGGCTCAGGACGGTTGGA.................................................................................................................................. | 20 | 3 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...TGATGCTGGGCAACGAGGAC................................................................................................................................................................................................................................... | 20 | 2 | 5 | 0.40 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ...........................GTTGGGCCTTTGATGG............................................................................................................................................................................................................... | 16 | 1 | 3 | 0.33 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................ATGAGGAGGTCAGGGG.................................................................................................................................................................................. | 16 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....GATGCTGGGCAACGAGGACAAGA............................................................................................................................................................................................................................... | 23 | 3 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....GATGCTGGGCAACGAGGACAAA................................................................................................................................................................................................................................ | 22 | 3 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....GATGCTGGGCAACGAGGACAA................................................................................................................................................................................................................................. | 21 | 2 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................TGCTAGATCGACTCAAAAAAAA....................................................................................... | 22 | 3 | 5 | 0.20 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....................................................................................................GTAGGCTCAGGACGGTTGG................................................................................................................................... | 19 | 3 | 6 | 0.17 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .....ATGCTGGGCAACGAGGACAA................................................................................................................................................................................................................................. | 20 | 2 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................GAAGAGACTGCCGGAACGCC................................................................................................................ | 20 | 3 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................CGAGCACACCTGTTGGGAC....................................................................................................................................................................................................................... | 19 | 3 | 15 | 0.13 | 2 | 0 | 1 | 0 | 0 | 1 | 0 |
| ..........................................................GAGGAGGTCAGGGGT................................................................................................................................................................................. | 15 | 1 | 9 | 0.11 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................................................GGAGGGTTGAAAGGG.............................................................................................................................. | 15 | 1 | 12 | 0.08 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................TAAGGCCAGATCGACT................................................................................................ | 16 | 1 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| .....ATGCTGGGCAACGAGG..................................................................................................................................................................................................................................... | 16 | 1 | 15 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...............GCGAGCACACCTGTTGG.......................................................................................................................................................................................................................... | 17 | 2 | 17 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................TCCATTTGATGCAAGCT............................................................................................................................................... | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .....................................CGGTTGACACAATGTGA.................................................................................................................................................................................................... | 17 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................CCCGTGAGTATAGGGGC............................................................. | 17 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
|
CTCGCTACGACCCGTCGCTCCTGTGGTCAACCCGGAAGCTACCTGTGTTACACTCATACTCCTCCCGTCCCCAGAGGTACGGCTCCCAGTAGGTAAACTACATCCGATCCCTCCCAACCTTCCCTGACGCCATTGCGGATTACGGTCTAGCTGAGTTTGGTTTTGGGTGTTGGGGCACTAATATCCACTGGTTTTACGTGCGGCCTAGGTAACTCGTGAAGCCTCACGCCATACTCCGACCGCTACAGTA
**************************************************((.............(((..((((.((((..((.((((...........(((.((....((.(((((((...((...(((....)))......))...)))))))...))....)).)))))))))..))....)).))))....)))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
GSM343915 embryo |
M053 female body |
SRR902009 testis |
M025 embryo |
SRR553485 Chicharo_3 day-old ovaries |
SRR553486 Makindu_3 day-old ovaries |
M023 head |
SRR902008 ovaries |
M024 male body |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................................................TGAGTGTTGGGGCCGTAATA................................................................... | 20 | 3 | 6 | 20.17 | 121 | 91 | 20 | 4 | 3 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................TGAGTGTTGGGGCCGTAATAT.................................................................. | 21 | 3 | 2 | 10.50 | 21 | 9 | 11 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................GTGTTGGGGCCGTAATATTCA............................................................... | 21 | 3 | 1 | 8.00 | 8 | 0 | 1 | 3 | 0 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................TTTTGGGTGCTGGGGCTCTA...................................................................... | 20 | 2 | 1 | 2.00 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................GTGTTGGGGCCGTAATAT.................................................................. | 18 | 2 | 5 | 1.80 | 9 | 4 | 2 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................GTGTTGGGGCCGTAATA................................................................... | 17 | 2 | 15 | 1.47 | 22 | 21 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................GTGTTGGGGCCGTAATATTC................................................................ | 20 | 3 | 6 | 1.33 | 8 | 0 | 2 | 5 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................GAGTGTTGGGGCCGTAATA................................................................... | 19 | 3 | 14 | 1.21 | 17 | 10 | 5 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................AGTGTTGGGGCCGTAATAT.................................................................. | 19 | 3 | 10 | 1.10 | 11 | 0 | 0 | 5 | 0 | 0 | 5 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................GAGTGTTGGGGCCGTAATAT.................................................................. | 20 | 3 | 6 | 1.00 | 6 | 2 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................TTGCGTATGACGGTCTAGCT.................................................................................................. | 20 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................TGAGTGTTGGGGCCCTAATATTCA............................................................... | 24 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................AGTGTTGGGGCACTAATATTCACGG............................................................ | 25 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................TGTTGGGGCCGTAATATTCA............................................................... | 20 | 3 | 4 | 0.75 | 3 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................TGGGTGTTGGGGCCGTAATA................................................................... | 20 | 2 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................GTTGGGGCCGTAATATTCA............................................................... | 19 | 3 | 12 | 0.42 | 5 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 2 | 0 | 0 |
| ..................................................................................................................................................................TTGAGTGTTGGGGCCGTAATA................................................................... | 21 | 3 | 5 | 0.40 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................TTTGGGTGCTGGGGCTCTA...................................................................... | 19 | 2 | 17 | 0.29 | 5 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................ATTGCGTATGACGGTCAAGCT.................................................................................................. | 21 | 3 | 12 | 0.25 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 |
| ..................................................................................................................................................................TTGGGTGTTCGGGCA......................................................................... | 15 | 1 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .......................................................................................................................................................................TGTTGGGGCCGTAATA................................................................... | 16 | 2 | 20 | 0.15 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................TTTGGGTCTTGGGGAACT....................................................................... | 18 | 2 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .....TACGACCCGTTGCTCCTGTT................................................................................................................................................................................................................................. | 20 | 2 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................TGTTGGGGCCGTAATATTC................................................................ | 19 | 3 | 15 | 0.13 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................TGTTGGGGCCGTAATAT.................................................................. | 17 | 2 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................AGTGCGGCCTAGGGAAGTCG.................................. | 20 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................TCCTGTAGTCAATGCGGAAG.................................................................................................................................................................................................................... | 20 | 3 | 12 | 0.08 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........CCCGTCGGTCCTGTGG................................................................................................................................................................................................................................ | 16 | 1 | 13 | 0.08 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................GGTGTTGGGGCCGTAAT.................................................................... | 17 | 2 | 13 | 0.08 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/23/2015 at 04:53 PM