ID:

dsi_18903

 Coordinate:

3r:17496945-17497094 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_17497095_17497532_+]; exon [3r_17497095_17497803_+]; intron [3r_17496642_17497094_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAATTTAAGGATAGGGATTTAAGAGCTCGACCTTATAACTCTTTTTATCTTTAACCCAAACTTATCTTAATTTTGCTTGTCCGTGTTGTGGGATGTTGTACGCCAAGTCAGTATCCAGCATCCGCCTTGAATTCACCATTATCCTTTTTGGTAGTGAATATAGTAAATATTTAAGGAGCTTTGCAATCCTTTTCCCGCAGATTTGAGGAGATGCGCATGCGATACGAAAGACGAGATCCTCGAGCCGAGG
**************************************************......(((((((..(((((.((((((.....(((.(((.((((((((.((.....)))))))))).)))..))).....((((((.((((.......)))).))))))..))))))...)))))))).)))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
........................................CTTTTTATCTTTAACCCA................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................CTGCAGATTTGAGGA......................................... 15 1 14 0.21 3 0 2 0 1 0
.....................................................................................................................................................................................................CAGCTTTGAGGAGAT...................................... 15 1 13 0.15 2 0 0 2 0 0
.................................................................................................................................................................................................CCTGCAGATTTGAGG.......................................... 15 1 10 0.10 1 0 1 0 0 0
..................................................................................GTGTTGCTGGATGTTGTA...................................................................................................................................................... 18 2 11 0.09 1 1 0 0 0 0
...............................................................................................................................................................................................TTCACCCAGCTTTGAGGAG........................................ 19 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

ATTAAATTCCTATCCCTAAATTCTCGAGCTGGAATATTGAGAAAAATAGAAATTGGGTTTGAATAGAATTAAAACGAACAGGCACAACACCCTACAACATGCGGTTCAGTCATAGGTCGTAGGCGGAACTTAAGTGGTAATAGGAAAAACCATCACTTATATCATTTATAAATTCCTCGAAACGTTAGGAAAAGGGCGTCTAAACTCCTCTACGCGTACGCTATGCTTTCTGCTCTAGGAGCTCGGCTCC
**************************************************......(((((((..(((((.((((((.....(((.(((.((((((((.((.....)))))))))).)))..))).....((((((.((((.......)))).))))))..))))))...)))))))).)))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR1275487
Male larvae		 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M025
embryo
 SRR1275483
Male prepupae
.......................................................................................................................................................................................GTTAGGAATAGGGCTTCAA................................................ 19 3 17 684.00 11628 9734 1798 4 0 50 4 2 10 11 7 2 1 1 2 2
.......................................................................................................................................................................................GTTAGGAAAAGGGCTTC.................................................. 17 1 2 10.00 20 0 0 13 4 0 3 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTAGGAAAAGGGCTTC.................................................. 16 1 4 3.25 13 0 0 5 3 0 4 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................GTTAGGAACAGGGCTTC.................................................. 17 2 16 2.00 32 0 0 0 32 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GTTAGGAAAAGGGCTTCAA................................................ 19 2 2 1.50 3 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0
........................CTAGCAGGAATCTTGAGAAAA............................................................................................................................................................................................................. 21 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTAGGAAAAGGGCTTCAA................................................ 18 2 5 1.00 5 0 0 4 0 0 0 0 0 0 1 0 0 0 0 0
.....................TATCTAGCTGGATTATTGAG................................................................................................................................................................................................................. 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GTTAGGAAAAGGGCTTCAAT............................................... 20 3 7 0.29 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GTTAGGAAAAGGGCTCC.................................................. 17 2 15 0.27 4 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GTTAGGAAAAGGGCTTCA................................................. 18 2 8 0.25 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTAGGAAAAGGGCTTCAAT............................................... 19 3 20 0.25 5 0 0 3 0 0 2 0 0 0 0 0 0 0 0 0
............................CTGGAATATTGGGAAAAAAAAAA....................................................................................................................................................................................................... 23 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................GGTTAGGAAAAGGGCTTCAA................................................ 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CGTTAGGAATAGGGCTTCA................................................. 19 3 16 0.13 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0
.......................................................................................................................................................................................GTTAGGAACAGGGCTTCAA................................................ 19 3 17 0.12 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTAGGAATAGGGCGT................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................TTTCTCGAAATGTTAGGA............................................................ 18 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GTTAGGAATAGGGCCTC.................................................. 17 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................TCTCGAAATGTTAGGA............................................................ 16 2 20 0.10 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................TCGTTAGGAACAGGGCTTC.................................................. 19 3 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ACGCTAGGCTTTATGCT................ 17 2 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................CATAGATGGCAGGCGGAA.......................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTAGGAATAGGGCTTCTAG............................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................GTTAGGATAAGGGCTTCAA................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AAAGGGGCGTCTAAA.............................................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Generated: 04/23/2015 at 10:30 PM