ID:

dsi_18888

 Coordinate:

2r:4780890-4781171 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.8 -48.8 -48.8

Flybase annnotation

exon [2r_4780712_4780889_+]; CDS [2r_4780712_4780889_+]; CDS [2r_4781172_4782586_+]; exon [2r_4781172_4782586_+]; intron [2r_4780890_4781171_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGCAGCTCAAATCGCGGAGGCACCCGTGGCTCCAGTGACAGTCGTGGATGTAAGTATCATAAGCCACGCTCACTTACTAAAATATTTCTTAGGGCATTAGATCTTTAAGCTCTGCATTACAGTTATTGCAAAACTTAAATTCAGTTTATGTAGAAGATATATAAACATTAAGATCGTTAAATATTACAATGCTGGCATTTAAGTTTCAGCTCTTGTTGCTTATGCACGACATGTAACTGGAAATATTAGCTTAATGAAATAATTTTAGTAAATGAGCCTAATCCTCTGAAAATAAACTAAAATTTTTCTTTCTAATATTTTAATATTTTAGGGCGCGGAAGAGAGACTCGTGAGAACGAGCGCAATCAGCGCGAATCTCGT
**************************************************..................(((((.(((((((((((((((.((((((.((((....)))))))))).....(((((((((((((((((((((((((((((((((.....))))))))((((..(((........)))..)))))))).))))))))))((((....))))....))))......)))))))................))))).)))))))))).)))))...........((((((...((((((.((.......)).)))))).))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
..........................................................................................................................................................................................................................................................................................TCCTCTGAACATAACCTAAAA............................................................................... 21 2 7 2.29 16 10 0 2 0 0 1 0 3 0
..........................................................................................................................................................................................................................................................................................TCCTCTGAACATAACCTAAAAA.............................................................................. 22 3 8 2.13 17 9 0 2 0 0 5 0 0 1
..............................................................................................................................................................................................................................................................................................CTGAACATAACCTAAAATTTT........................................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCCTCTGAACATAACCTAAAACTTT........................................................................... 25 3 1 2.00 2 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................................GCGGAAGAGAGACTCGTGAGAACG....................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................CGCAATCAGCGCGAATCTCGT 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCCTCTGAACATAACCTAAAAAT............................................................................. 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................GAGAGACTCGTGAGAATG....................... 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GATGGCGCGGAAGAGAGACTCGGGA............................ 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................TGGCTCCAGTGACAGTCGTGGATGG.......................................................................................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................AAAATGAACTAAAATTTTTC......................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..GCAGCTCAAATCGCGGAGGC........................................................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................AGGCACCCGTGGCTCCAGTGAAAAA................................................................................................................................................................................................................................................................................................................................................... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TTCCTCTGAACATAACCTAAAATTTT........................................................................... 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................ATAAACATTAAGATCGTT........................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................ATTCCTCTGAACATAACCTAAAATTTTT.......................................................................... 28 3 1 1.00 1 0 0 1 0 0 0 0 0 0
.................GAGGCACCCGTGGCT.............................................................................................................................................................................................................................................................................................................................................................. 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GATGGCGCGGAAGAGAGACT................................. 20 2 2 0.50 1 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................TCTGAACTTAACCTAAAATTTT........................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCCTCTGAACATAACCTAACATT............................................................................. 23 3 6 0.33 2 0 0 2 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCCTCTGAACATAACCTAAAATAT............................................................................ 24 3 6 0.33 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TTCCTCTGAACATAACCTAAAATTT............................................................................ 25 3 6 0.33 2 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................TCCTCTGAACATAACCTAAAAC.............................................................................. 22 3 9 0.22 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGTTGCTTATCCACGACA...................................................................................................................................................... 18 1 5 0.20 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................ACCTAATCCTCTGAAA.......................................................................................... 16 1 6 0.17 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TTCCTCTGAACATAACCTAAAATT............................................................................. 24 3 6 0.17 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCCTCTGAACATAACCTAAAAT.............................................................................. 22 2 7 0.14 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCCTCTGAACATAACCTAGAA............................................................................... 21 3 10 0.10 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCCTCTGAACGTAACCTAAAA............................................................................... 21 3 20 0.10 2 0 0 0 1 1 0 0 0 0
........................................................................................CTTAGGGCATTAGTGCTCT................................................................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 1 0 0 0 0 0
...................GGCACCCGGGGCTCC............................................................................................................................................................................................................................................................................................................................................................ 15 1 17 0.06 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TCTGAACATAACCTAAAA............................................................................... 18 2 18 0.06 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................TCCTCTGAACATAAA..................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GGCGTCGAGTTTAGCGCCTCCGTGGGCACCGAGGTCACTGTCAGCACCTACATTCATAGTATTCGGTGCGAGTGAATGATTTTATAAAGAATCCCGTAATCTAGAAATTCGAGACGTAATGTCAATAACGTTTTGAATTTAAGTCAAATACATCTTCTATATATTTGTAATTCTAGCAATTTATAATGTTACGACCGTAAATTCAAAGTCGAGAACAACGAATACGTGCTGTACATTGACCTTTATAATCGAATTACTTTATTAAAATCATTTACTCGGATTAGGAGACTTTTATTTGATTTTAAAAAGAAAGATTATAAAATTATAAAATCCCGCGCCTTCTCTCTGAGCACTCTTGCTCGCGTTAGTCGCGCTTAGAGCA
**************************************************..................(((((.(((((((((((((((.((((((.((((....)))))))))).....(((((((((((((((((((((((((((((((((.....))))))))((((..(((........)))..)))))))).))))))))))((((....))))....))))......)))))))................))))).)))))))))).)))))...........((((((...((((((.((.......)).)))))).))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
....................................................................................................................................................................................................GGAAATTCAAAGTCGA.......................................................................................................................................................................... 16 1 6 14.33 86 42 21 21 1 0 0 1
....................................................................................................................................................................................................GGAAATTCAAAGTCG........................................................................................................................................................................... 15 1 17 11.24 191 70 61 41 16 0 0 3
....................................................................................................................................................................................................GGAAATTCAAAGTCGAGA........................................................................................................................................................................ 18 1 1 1.00 1 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................CTGTACATGGACCGTCATAAT..................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................................................................ATCGCGGGCCTTCTCTC.................................... 17 2 11 0.27 3 0 0 0 0 0 0 3
................................GGTCACCGTCAGCACAAACAT......................................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0
...........................................................................ATGATTTTATAAAGA.................................................................................................................................................................................................................................................................................................... 15 0 10 0.10 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................CAGGAAATTCAAAGTCGA.......................................................................................................................................................................... 18 2 11 0.09 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................AATCGCGGGCCTTCTCTCA................................... 19 3 12 0.08 1 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................................................................................................ATCGCGGGCCTTCTCTCTA.................................. 19 3 13 0.08 1 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................................................................................AGAAAATCCAGCGCCATCT....................................... 19 3 13 0.08 1 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................................................................................................TCGCGGGCCTTCTCTC.................................... 16 2 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/23/2015 at 03:29 AM