dsi_18885

Name	Class	Family	Strand
DNAREP1_DYak	RC	Helitron	+

GGAGTTGACGTTTATACGGACGAACAGACAAGCGGACATGGGAGGATCGACTTTGCTATCAAATTATAGGGCCGGAAACGCTTTTCTCGGTTGGATACATTCCAACGAATCTAGTATACCCCTTACTATACGATTTACGGATATATGCAGTTAGTTAACTTATATTTTAATATTTTTACAATTTTGTCTTACTTTTTTAGGCATTGAGTATCTCGTTGAAAACAGGCTGCTACGTCATGATCCCCAGGAC ************************************************................((((((((((((....)))).))((((((.....))))))((((((((((.......)))))...)))))..(((((((...((((....)))))))))))..................)))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M053 female body	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR902008 ovaries
......................................................................................................CAACGAATCTAGTATACCCCT...............................................................................................................................	21	0	7	1.29	9	0	8	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................AAACAGGCTGCTACGTCAT............	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................CGTTGAAAACAGGCTGCTACGT...............	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CGTTGAAAACAGGCTGCTACGG...............	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGAGGTGATGATCCCCAGGA.	22	3	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................TATTTTTTAATAGTTTTACAATT...................................................................	23	2	3	0.33	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................CAACGAATCTCGTATACCCCTT..............................................................................................................................	22	1	16	0.19	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CACTGAGTATCTTGTTGACA.............................	20	3	6	0.17	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................TATCACGTTGAAAACA..........................	16	1	7	0.14	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................TTCCAACGAATCTAGT.......................................................................................................................................	16	0	18	0.06	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................TTGAGGATCTTGTTGAAAAA...........................	20	3	18	0.06	1	0	0	0	0	0	0	0	0	1	0
.............AGACCGACGATCAGACAA...........................................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1

CCTCAACTGCAAATATGCCTGCTTGTCTGTTCGCCTGTACCCTCCTAGCTGAAACGATAGTTTAATATCCCGGCCTTTGCGAAAAGAGCCAACCTATGTAAGGTTGCTTAGATCATATGGGGAATGATATGCTAAATGCCTATATACGTCAATCAATTGAATATAAAATTATAAAAATGTTAAAACAGAATGAAAAAATCCGTAACTCATAGAGCAACTTTTGTCCGACGATGCAGTACTAGGGGTCCTG ************************************************................((((((((((((....)))).))((((((.....))))))((((((((((.......)))))...)))))..(((((((...((((....)))))))))))..................)))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR902008 ovaries	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR553488 RT_0-2 hours eggs
....................................................................................AGAGCCAACCTATGTAAGGTTGCT..............................................................................................................................................	24	0	1	2.00	2	1	1	0	0	0	0	0
............................................................................................................................................................................................................ACTCATAGAGCAACTTTTGTCCGACGAT..................	28	0	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................GAGCCAACCTATGTAAGGTTGCTT.............................................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0
............ATATGCCTGCTTGTCTGTTCGCCTGT....................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................TTAGATCATATGGGAAATGATATGC......................................................................................................................	25	1	4	0.25	1	0	0	1	0	0	0	0
........................................................................................................TGCTTAGATCATATGGGAAATGAT..........................................................................................................................	24	1	5	0.20	1	1	0	0	0	0	0	0
......................................................................................................GTTGCTTAGATCATATGGGGAA..............................................................................................................................	22	0	7	0.14	1	0	0	1	0	0	0	0
......................................................................................................GTTGCTTAGATCATATGGGGA...............................................................................................................................	21	0	7	0.14	1	0	0	0	1	0	0	0
.................................................................................................ATATTGTTGCTTAGATCATATGGGGA...............................................................................................................................	26	3	7	0.14	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................GTCCGATGATGCAGGA............	16	2	10	0.10	1	0	0	0	0	0	0	1
......................................................................................................TTTGCTTAGATCATATGGGGAA..............................................................................................................................	22	1	11	0.09	1	0	0	0	1	0	0	0
...................................................AAACGATAGTTTAATAA......................................................................................................................................................................................	17	1	13	0.08	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................GTGGCTCATAGAGCAACTC..............................	19	3	18	0.06	1	0	0	0	0	0	1	0
CCTGAACTGCGAATATGG........................................................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	2l:21025625-21025874 -	dsi_18885	GGAGTTGACGTTTATA------------CGGACGAACAGACAAGCGGACATGGGAGGATCGACTTTGCTATCAA--------------------------ATTATAGGGCCGGAAACGCTTTTCT----CGGTTGGATA-CA-------------TTCCAACGAATCTAGTATACCCCT-TACT-A------TACGATTTACGGATATATGCAG---------------TTAGTTAACTT--------ATA------TTT------------TAATATTT----TTACAATTT----------TGTCTTA--CTT--------------------------------T---------------------------------------------------------TTTA-------------------------------------------GGCATTGAGTATCT----CGTTGAAAACAGGCTGCTACGTCATGATCCCCAGGAC
droSec2	scaffold_6:440643-440905 -		GACCTTGACGTTCATA------------TG--------GACAAACGGACAGGGCCAGATCGACTCGGCTATTGATCCTGAACAAGAATAT----ATATACATAAAATGGGCGGAAACGCTTCCTTGTGCCTGTTACATA-CT-------------TTTCAACGAATCTAGTATACCCTTTTACT-C------TACGAGTAACGGATATACTAGAAA----------------GT---------------------------------------------T----T-------TCTTT------TGAGCT----------------------------------------------------------------------------------------------------TTAAAGGTTATAATTCTACTTATCCAGCAATATA---------AAATTTCGTTTTTAATTTAATAGAAAATGGGCTATTATATAAT------------
dm3	chr2L:21743022-21743222 -		C-------------------------------------------------------------------TATCGAT--------------------------T-----TGCAGGAAACGCTTTATTCT--CTGTTAGATA-CCAACGAGATTAGA-TTCCAACGAATCTAGTATACCGCTTTACT-A------TACTCTTAATA----TATGCAG---------------TTAGTTAACCT--------ATA------TTT------------TAATATTT----TTACTATTT----------TGTCTTA--TTT--------------------------------T---------------------------------------------------------TTTA-------------------------------------------GGCATTGAGTATCT----CGTTGAAAACAGGCTGCTACGTCATGATCCCCAGGAC
droEre2	scaffold_4929:15084367-15084627 +		GATCGAGGCTTTCATA------------CG----GACAGACAGACGGACATGGCCAGATCGACTCGGCTATTGATCCTGCTTAAGAATAT----ATAAA-----------CGGAAACGTCTCCTT-TGCCTGTTACATA-CT-------------TTTAAACGAAAGTAGTATACCCTTTTATC-C------TACGAGTAACGGGTATAATTACAAA---------------AT----------------AATTAAATTT------------AAAAAATT----TTCTAAATT----------TGAATGA--TTTTTAGATCTTA----------------------C---------GT-------------CAGAATTACGCCAG----------AA---ACAT----TTA------------------------------------------------GAG------------------GTATGCTACTTCAAAATCC-------
droYak3	2R:1108440-1108714 +	dya_422	GA------CGTTCATA------------CG----GACAGACAGACGGACATGGCCAGACCGCCTTGGCTATTGATCCCGATCAAGAATATATGTATATACTTTATATGGTCGGAAACACTTTCTTCTACATGTTACATAACT-------------CTTCAACGAATTTAGTAAACCCTTTTACT-C------TACGTGTAATA------A---TG--GCTGGGCTGCAGTTAGGAAACCT--------ATATTT-------------------AATATTT----TAAAAATTT----------TGTCATA--TAT--------------------------------T---------------------------------------------------------TTTA-------------------------------------------GGCATTGAGTACCT----CGTTGAAAACCGGCTGCTACGTCATGATCCCCAGGAC
droEug1	scf7180000409711:3458266-3458508 -		GATCCCAGCGTTCATT------------CGGACGGACGGACAGACGGACATGGCTCAATCGACTTCGGTATTGATCCTGATCAAGAATAT----ATATACCTTATAGGGTCGGAAACGCATCCTTCTATCTGTTCCATA-CT-------------TTTCAACGAATCTAGTATACCCTTTTACT-C------TACGAGTAACGGGTATAAAAACTTTATTTG------G-------T-----------------------------------TATTAGGT----TTAAAATTA----------AGT-TTA--TAT------------------------------------------------------------------------------------------TTT--------------------------------------------AGAATGGAGTACCC----AACTGTAAACAGG------------------------
droBia1	scf7180000302422:1276845-1277093 -		GATATCAGCGTTGATA------------CGGACGGACGGACAAACAGACATGGCTAGATCGACCCGGCGAGTGATCCTGATCAAGAATAT----ACATAATTTCTGGGGTCGGAAACGCTTTCTTTTACCTGCTACATA-CT-------------TTCTAACGAATTTAGTATACCCTTTTACT-C------TACGAGTAAGTGGTATAATAACAGT---------------TTAG--------------------------TATTAACCTACAATATT-------------T----------TTGTTTA--TTT--------------------------------T--TCTAG----------------------------TGACTATCACTAT---------------------------------------------------------------------T----TTTTAAAAACAGTATGC--------------------
droTak1	scf7180000415964:7806-8047 +		GATCTCAGCGTTCATA------------CG----GACGGACAGACGGACATGGCTATATCGACTCGGCTAGTGACCCTGATTAAGAATAA----ATATACTTTATAGGGTCGGAAACGCTTTCTTCTCCCTGTTACATA-CT-------------TTTGCACGAATACAATATACCTTTTTACT-C------TACGAGTAACGGGTATAAAAACTT---------------A-TAAATTT--------AAA------ATT------------AAATA-----------------------------------TTT--------TTTAAG------------------------------------------------------AGAAT-TAAATAT---------TTTA-------------------------------------------AAAATTCAGTACTT----CG--GAAAACA--------------------------
droEle1	scf7180000491282:584085-584287 +		GATCTCGACATTCATA------------CGGACGGATAAACAGACAGACATGGCCAAATTGACTCGCCTATTGAT--------------------------------GATCGGAAACGCTACCTTTTACCTGTTACATA-CT-------------TTTCAACGAATACAATATTCCCTT-TACT-C------TACGAATAACGGGTATAAATAG---------------GCTTTGTACTT--------AAT------TTC------------TATCAATT----ACGTAAGTC----------T-TTTTA--TTG------------------------------------------------------------------------------------------TTTC-------------------------------------------TGCATTGA-----------------------------------------------
droRho1	scf7180000758894:706-999 -		GATCTCAGCGTTCATACGGACAGACAGACAGACAGACGGACAGGCGGACATGGCTATATCGACTCGGCTAGTGACCCTGATCAAGAATAT----ATATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTACATA-CT-------------TTTGCACGAATACAATATACCCTTTTACT-C------TACGAGTAACGGGTATAACAACATA---------------AT----------------ATTT-------------------AATATTT----T-----------A------TTGCTTACATTT--------TACCAAAAGATTTTT------------CCTAGCTATC----------------------------------TT---------TGTA-------------------------------------------CATATAGAAT--GT----CG-----AACAGTTATATATGTCATAAAGCCTACAAA
droFic1	scf7180000453932:800502-800678 -		GGTCTCGACGTTCATA------------CG--------GACAGACAAGCATACATACATCGATTATTCTAATGATCCTTATTAATAATGT----ATATCCTTAATGGGGTCCAAAATGCCTTCTTCCACCTTATACATT-CT-------------TTTCAACAAATACAATATACCCGTTCACT-C------TACGAGTAACTGAAACGACCTG---------------TCAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------
droKik1	scf7180000299506:4747-5031 -		GGTACTAGTTTGCATAGAAACGGACAGACGGACGGACGGACAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATAT----ATATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGTAAA-CT-------------TCTGACTGAAATTATAGTACCCTG---------------C-----AAGGGTATACAAATTATAACTT--CGTTGTTTTTCAACGTATTTTTATCTA------CTC------------TGAGA--------TATAAACT----------TTTTTTA--TTA--------------------------------T---------------------------------------------------------TCTA-------------------------------------------GAATTTTGGTATAAATTTCATAAAAATCGGACAACTATATCAT------------
droAna3	scaffold_4956:4445-4733 -		CTAGTTTGCGTAGAAA------------CAGAGAGACGGACAGACGGACGTGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAATAT----ATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACA-CT-------------TTTGACCAAAATTATAATACCCTCT-------------GC-----AAGGGTATAAATATAAA---------------GT-------------------------T------------TGAAG-GTGTATCTATTATTT----------TA----------------------AAAATGTTATAAATAACATCTTTACTAGACTTCTGCATGAATGCACTCATTTGTGGCAG----------AACAGATCT----TTA-----------------------------------------------------------------------CAGTAATGTAGTGTTTTCAAAAAC
droBip1	scf7180000396314:10143-10400 +		AGAA---ACGGACAGA------------CAGACGGACAGACAGACGGACATGCGCATATCAACTCAGGAGGTGATCCTGATCAAGATTAT----ATATACCTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACA-CT-------------TTTGGACAAAATTATAATACCCTCT-------------GC-----AAGGGTATACAAAATTGACTCA------GTTAGA-----------------------AGCAAAAT-------GA--ATGA----AGATAATTT----------TGGCATT--GAT--------------------------------T---------------------------------------------------------CCTC-------------------------------------------GGT--TTGGTATTT----CATCGA-AACATATTGCAATGTTTTTAGTCCC-----
dp5	Unknown_group_230:25458-25645 +		A---------------------------CGGACGGACGGACAGACAGACATGGCTCAATTGACTCGGCTATTGATGCTGATCACACATCT----A---------------------------------------------CT------------TTTACCACAAATCTAATATACCCCAATACT-CAT----TTTGAATATCA-------------------------------------------------------------------------------ATTTATCAATT----------TATCTCG--TTT-------------------------------------------TTTATCTCATTCTACATGTTTTCGGCAC----------AAT-GATCT----TCT-------------------------------AATTAGTTTGTCATTG----------------------GG------------------------
droPer2	scaffold_6:5401495-5401737 -		GA------CGGACAGA------------CGGACGGACGGACAGACAGACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATAT----ATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACA-CA------TCCACTTTTACCACAAATCTAATATACCCCAATACT-CAT----TTTGAGTATCGGGTATAAACAGTG---------------GGTT------------------------------------------TTT----T-----------A------TGTGTTTCATTT--------CTTAAGAAGGTTAAAAATAGCA-----------------------------------------------CTTT---------TCTA-------------------------------------------TATATAGAGT---------------------------------------------
droWil2	scf2_1100000004884:107690-107954 -	dwi_2346	GACCTT-GTATTCATA------------CG--------GAGAGACGGACAAGGCTAAATCGGCTCGGCTGTTGATGCTGA--AAAAATAT----TTATACTTTATGGGGTCGGAAAAGCTTCCTTCTGCCTGTTACATA-CA-------------TTTTGGGGACT----TGTACCATTTCACC-A------CATGGGTGCATGGTATAAAAATATA---------------AAAGTTAT--------AAA------TTT------------TAAAAATTGTACTTATTAATT----------TAAACTA--TTT------------------------------------------------------------------------------------------TTCA-------------------------------------------GGCATTGAATATCT----TGTAGAAAATAGATTGTTACGCCACGATCCTCAAGAT
droVir3	scaffold_12967:576291-576538 +		GATCCTTGCGTTCATAC--------ATACGGACGGACAGACAGGCGGACATGGCTAGAGCGACTCGGCTATTGATGCTGATCAAGAATAT----ATATACTTAATGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATA-CA------TTTCGATTTCGCACAAATACAATATACCCTTATACC-CATTTTTAATGGGTTCAGGGTATAAAAATGT----------------------------------ATTTAAAAAT------------AAAAA--T----AAACAATTT----------TGTTCCG--T-------------------------------------------------------------------------------------------------------------------------------------------TGCATTTTGTGACT----CGCTG--------------------------------
droMoj3	scaffold_6501:532740-532971 -		AATCGACGCGTTCATA------------CATACGGACAGACAGACGGACAGGGCCAAATCAACTCAGCTCGTCGCCCTGATCAAGAATAT----ATATACTTTGTGGGGTCTGCCACGCCTCCTTCTCCCTGTTACATA-CA-------------TTTCAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATAAAAAAAG---------------GGAAAATGC--------ACA------TTT------------TAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-ATTAAATTGTAATATTCCTCTTTTA-----
droGri2	scaffold_8725:865-1099 +		GATCTGTGTGTTCACA------------CAGAAAGACGGATAAACGGACTTGGCTATATCGACTTAACTGTTAACCCTGATCAATAATAT----ATATACTTCATGGGGTCGGAAATGCTTCCCTCTGCTTGTTACATA-CA-------------TTTGCAGAAAACCATTTTTGCCATTT-CT--------AATGGATTCAGGGTATAATAATAAT---------------AA----------------------------TATCAGCTTGAAGTATT-------------TCTTCCGACTTCGTTTTA--TTT-------------------------------------------------------------------------------------------TTC-------------------------------------------GGTGTTATATATTT-----------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GGAGTTGACGTTTATA------------CGGACGAACAGACAAGCGGACATGGGAGGATCGACTTTGCTATCAA--------------------------ATTATAGGGCCGGAAACGCTTTTCT----CGGTTGGATA-CA-------------TTCCAACGAATCTAGTATACCCCT-TACT-A------TACGATTTACGGATATATGCAG---------------TTAGTTAACTT--------ATA------TTT------------TAATATTT----TTACAATTT----------TGTCTTA--CTT--------------------------------T---------------------------------------------------------TTTA-------------------------------------------GGCATTGAGTATCT----CGTTGAAAACAGGCTGCTACGTCATGATCCCCAGGAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................CAACGAATCTAGTATACCCCT-.......................................................................................................................................................................................................................................................................................................................................	21	7	1.29	9	0	0	0	1	8	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGGCTGCTACGTCAT............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAAAACAGGCTGCTACGT...............	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAAAACAGGCTGCTACGG...............	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TTCCAACGAATCTAGT................................................................................................................................................................................................................................................................................................................................................	16	18	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GACCTTGACGTTCATA------------TG--------GACAAACGGACAGGGCCAGATCGACTCGGCTATTGATCCTGAACAAGAATAT----ATATACATAAAATGGGCGGAAACGCTTCCTTGTGCCTGTTACATA-CT-------------TTTCAACGAATCTAGTATACCCTTTTACT-C------TACGAGTAACGGATATACTAGAAA----------------GT---------------------------------------------T----T-------TCTTT------TGAGCT----------------------------------------------------------------------------------------------------TTAAAGGTTATAATTCTACTTATCCAGCAATATA---------AAATTTCGTTTTTAATTTAATAGAAAATGGGCTATTATATAAT------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................TTTCAACGAATCTAGTATACCCTT........................................................................................................................................................................................................................................................................................................................................	24	20	1.40	28	28	0	0	0
....................................................................................GAATAT----ATATACATAAAATGGGCGG..........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
......................................................................................ATAT----ATATACATAAAATGGGCGGAA........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
...............................................................................................TATACATAAAATGGGCGGAAACGCT...................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATTTAATAGAAAATGGGCTAT....................	25	1	1.00	1	0	0	1	0
............................................................................................................................................................TTCAACGAATCTAGTATACCCTT........................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	3	0	0	0

dm3

C-------------------------------------------------------------------TATCGAT--------------------------T-----TGCAGGAAACGCTTTATTCT--CTGTTAGATA-CCAACGAGATTAGA-TTCCAACGAATCTAGTATACCGCTTTACT-A------TACTCTTAATA----TATGCAG---------------TTAGTTAACCT--------ATA------TTT------------TAATATTT----TTACTATTT----------TGTCTTA--TTT--------------------------------T---------------------------------------------------------TTTA-------------------------------------------GGCATTGAGTATCT----CGTTGAAAACAGGCTGCTACGTCATGATCCCCAGGAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATCT----CGTTGAAAACAGGCTGC....................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGCTACGTCATGATCC.......	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGAGTATCT----CGTTGAAAACAGGC.......................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................TATCGAT--------------------------T-----TGCAGGAAACGCTTTATTC.............................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCTGCTACGTCATGATCCC......	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATCT----CGTTGAAAACA..........................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTATCT----CGTTGAAAACAGGCTGC....................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGTCATGATCCCCAGGAC	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT----CGTTGAAAACAGGCTGCTACGTCA.............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CTTAATA----TATGCAG---------------TTAGTTA...............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTATCT----CGTTGAAAACAGGC.......................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAGGCTGCTACGTCAT............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................ATCGAT--------------------------T-----TGCAGGAAACG.....................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTGAGTATCT----CGTT.................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCTGCTACGTCATGATCCC......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATCT----CGTTGAAAACAGGCT......................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GATCGAGGCTTTCATA------------CG----GACAGACAGACGGACATGGCCAGATCGACTCGGCTATTGATCCTGCTTAAGAATAT----ATAAA-----------CGGAAACGTCTCCTT-TGCCTGTTACATA-CT-------------TTTAAACGAAAGTAGTATACCCTTTTATC-C------TACGAGTAACGGGTATAATTACAAA---------------AT----------------AATTAAATTT------------AAAAAATT----TTCTAAATT----------TGAATGA--TTTTTAGATCTTA----------------------C---------GT-------------CAGAATTACGCCAG----------AA---ACAT----TTA------------------------------------------------GAG------------------GTATGCTACTTCAAAATCC-------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........TTCATA------------CG----GACAGACAGACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
......................................GACAGACGGACATGGCCAGATCGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0	0

droYak3

GA------CGTTCATA------------CG----GACAGACAGACGGACATGGCCAGACCGCCTTGGCTATTGATCCCGATCAAGAATATATGTATATACTTTATATGGTCGGAAACACTTTCTTCTACATGTTACATAACT-------------CTTCAACGAATTTAGTAAACCCTTTTACT-C------TACGTGTAATA------A---TG--GCTGGGCTGCAGTTAGGAAACCT--------ATATTT-------------------AATATTT----TAAAAATTT----------TGTCATA--TAT--------------------------------T---------------------------------------------------------TTTA-------------------------------------------GGCATTGAGTACCT----CGTTGAAAACCGGCTGCTACGTCATGATCCCCAGGAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCT----CGTTGAAAACCGGCTGCTACGT...............	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAACCGGCTGCTACGT...............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACCGGCTGCTACGTC..............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................GTATATACTTTATATGGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0
...........TCATA------------CG----GACAGACAGACGGACATGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................ATGTATATACTTTATATGGTCGGAAAC......................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............CATA------------CG----GACAGACAGACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GATCCCAGCGTTCATT------------CGGACGGACGGACAGACGGACATGGCTCAATCGACTTCGGTATTGATCCTGATCAAGAATAT----ATATACCTTATAGGGTCGGAAACGCATCCTTCTATCTGTTCCATA-CT-------------TTTCAACGAATCTAGTATACCCTTTTACT-C------TACGAGTAACGGGTATAAAAACTTTATTTG------G-------T-----------------------------------TATTAGGT----TTAAAATTA----------AGT-TTA--TAT------------------------------------------------------------------------------------------TTT--------------------------------------------AGAATGGAGTACCC----AACTGTAAACAGG------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GATATCAGCGTTGATA------------CGGACGGACGGACAAACAGACATGGCTAGATCGACCCGGCGAGTGATCCTGATCAAGAATAT----ACATAATTTCTGGGGTCGGAAACGCTTTCTTTTACCTGCTACATA-CT-------------TTCTAACGAATTTAGTATACCCTTTTACT-C------TACGAGTAAGTGGTATAATAACAGT---------------TTAG--------------------------TATTAACCTACAATATT-------------T----------TTGTTTA--TTT--------------------------------T--TCTAG----------------------------TGACTATCACTAT---------------------------------------------------------------------T----TTTTAAAAACAGTATGC--------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GATCTCAGCGTTCATA------------CG----GACGGACAGACGGACATGGCTATATCGACTCGGCTAGTGACCCTGATTAAGAATAA----ATATACTTTATAGGGTCGGAAACGCTTTCTTCTCCCTGTTACATA-CT-------------TTTGCACGAATACAATATACCTTTTTACT-C------TACGAGTAACGGGTATAAAAACTT---------------A-TAAATTT--------AAA------ATT------------AAATA-----------------------------------TTT--------TTTAAG------------------------------------------------------AGAAT-TAAATAT---------TTTA-------------------------------------------AAAATTCAGTACTT----CG--GAAAACA--------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GATCTCGACATTCATA------------CGGACGGATAAACAGACAGACATGGCCAAATTGACTCGCCTATTGAT--------------------------------GATCGGAAACGCTACCTTTTACCTGTTACATA-CT-------------TTTCAACGAATACAATATTCCCTT-TACT-C------TACGAATAACGGGTATAAATAG---------------GCTTTGTACTT--------AAT------TTC------------TATCAATT----ACGTAAGTC----------T-TTTTA--TTG------------------------------------------------------------------------------------------TTTC-------------------------------------------TGCATTGA-----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GATCTCAGCGTTCATACGGACAGACAGACAGACAGACGGACAGGCGGACATGGCTATATCGACTCGGCTAGTGACCCTGATCAAGAATAT----ATATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTACATA-CT-------------TTTGCACGAATACAATATACCCTTTTACT-C------TACGAGTAACGGGTATAACAACATA---------------AT----------------ATTT-------------------AATATTT----T-----------A------TTGCTTACATTT--------TACCAAAAGATTTTT------------CCTAGCTATC----------------------------------TT---------TGTA-------------------------------------------CATATAGAAT--GT----CG-----AACAGTTATATATGTCATAAAGCCTACAAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGTCTCGACGTTCATA------------CG--------GACAGACAAGCATACATACATCGATTATTCTAATGATCCTTATTAATAATGT----ATATCCTTAATGGGGTCCAAAATGCCTTCTTCCACCTTATACATT-CT-------------TTTCAACAAATACAATATACCCGTTCACT-C------TACGAGTAACTGAAACGACCTG---------------TCAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGTACTAGTTTGCATAGAAACGGACAGACGGACGGACGGACAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATAT----ATATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGTAAA-CT-------------TCTGACTGAAATTATAGTACCCTG---------------C-----AAGGGTATACAAATTATAACTT--CGTTGTTTTTCAACGTATTTTTATCTA------CTC------------TGAGA--------TATAAACT----------TTTTTTA--TTA--------------------------------T---------------------------------------------------------TCTA-------------------------------------------GAATTTTGGTATAAATTTCATAAAAATCGGACAACTATATCAT------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTAGTTTGCGTAGAAA------------CAGAGAGACGGACAGACGGACGTGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAATAT----ATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACA-CT-------------TTTGACCAAAATTATAATACCCTCT-------------GC-----AAGGGTATAAATATAAA---------------GT-------------------------T------------TGAAG-GTGTATCTATTATTT----------TA----------------------AAAATGTTATAAATAACATCTTTACTAGACTTCTGCATGAATGCACTCATTTGTGGCAG----------AACAGATCT----TTA-----------------------------------------------------------------------CAGTAATGTAGTGTTTTCAAAAAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................................TCTTTACTAGACTTCTGCATGAATGCACT.....................................................................................................................................	29	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TTGTGGCAG----------AACAGATCT----TTA-----------------------------------------------------------------------CAGC....................	25	5	0.20	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TGTGGCAG----------AACAGATCT----TTA-----------------------------------------------------------------------CAGTAATG................	28	5	0.20	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................G----------AACAGATCT----TTA-----------------------------------------------------------------------CAGTAATGTAGTGT..........	27	5	0.20	1	0	0	1	0	0	0
......TGCGTAGAAA------------CAGAGAGACGGACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................ACTAGACTTCTGCATGAATGCACTCA...................................................................................................................................	26	8	0.13	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TAGACTTCTGCATGAATGCACTCATT.................................................................................................................................	26	18	0.11	2	0	2	0	0	0	0
............GAAA------------CAGAGAGACGGACAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	1	0	0	0	0	0
.....................................GGACAGACGGACGTGCTCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	0	0	1
......................................GACAGACGGACGTGCTCATATCGACTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	11	0.09	1	0	0	0	0	1	0
..........................................GACGGACGTGCTCATATCGACTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	1	0	0	0	0	0
....................................CGGACAGACGGACGTGCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	1	0	0	0	0	0
...............................................ACGTGCTCATATCGACTCAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	12	0.08	1	1	0	0	0	0	0
.........................................AGACGGACGTGCTCATATCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	1	0	0	0	0	0
................................................CGTGCTCATATCGACTCAGGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.08	1	0	1	0	0	0	0
................................................CGTGCTCATATCGACTCAGGAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TTCTGCATGAATGCACTCATTTGTGGCA..........................................................................................................................	28	14	0.07	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TGCACTCATTTGTGGCAG----------AACAGATC.......................................................................................................	26	16	0.06	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TGCACTCATTTGTGGCAG----------AACAG..........................................................................................................	23	16	0.06	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TTCTGCATGAATGCACTCATTTGTGG............................................................................................................................	26	18	0.06	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TGCATGAATGCACTCATTTG...............................................................................................................................	20	19	0.05	1	0	1	0	0	0	0
...................................................................................................................ATGTCTCCTTCACTGCGTTGCACA-CT-------------................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TCATTTGTGGCAG----------AACAGATCT----..................................................................................................	22	20	0.05	1	1	0	0	0	0	0

droBip1

AGAA---ACGGACAGA------------CAGACGGACAGACAGACGGACATGCGCATATCAACTCAGGAGGTGATCCTGATCAAGATTAT----ATATACCTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACA-CT-------------TTTGGACAAAATTATAATACCCTCT-------------GC-----AAGGGTATACAAAATTGACTCA------GTTAGA-----------------------AGCAAAAT-------GA--ATGA----AGATAATTT----------TGGCATT--GAT--------------------------------T---------------------------------------------------------CCTC-------------------------------------------GGT--TTGGTATTT----CATCGA-AACATATTGCAATGTTTTTAGTCCC-----	Size	Hit Count	Total Norm	Total
No Reads

dp5

A---------------------------CGGACGGACGGACAGACAGACATGGCTCAATTGACTCGGCTATTGATGCTGATCACACATCT----A---------------------------------------------CT------------TTTACCACAAATCTAATATACCCCAATACT-CAT----TTTGAATATCA-------------------------------------------------------------------------------ATTTATCAATT----------TATCTCG--TTT-------------------------------------------TTTATCTCATTCTACATGTTTTCGGCAC----------AAT-GATCT----TCT-------------------------------AATTAGTTTGTCATTG----------------------GG------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................TACCACAAATCTAATATACCCCA........................................................................................................................................................................................................................................................................................................................................	23	20	0.70	14	0	14	0	0	0	0	0	0	0	0
..............................GACGGACGGACAGACAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.65	13	0	0	0	0	0	0	0	0	13	0
..................................GACGGACAGACAGACATGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.45	9	0	9	0	0	0	0	0	0	0	0
...................................ACGGACAGACAGACATGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.45	9	0	9	0	0	0	0	0	0	0	0
............................................................................................................................................................TACCACAAATCTAATATACCCCAATAC....................................................................................................................................................................................................................................................................................................................................	27	20	0.40	8	0	0	8	0	0	0	0	0	0	0
.............................................................................................................................................................ACCACAAATCTAATATACCCCAATAC....................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	0	0	0	0	0	0	7	0	0
..................................GACGGACAGACAGACATGGCTCAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.29	2	0	0	0	0	0	0	0	0	2	0
..................................GACGGACAGACAGACATGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.25	5	0	0	0	0	0	0	0	0	0	5
............................................................................................................................................................................................................................................................................................................................................................................................................AAT-GATCT----TCT-------------------------------AATTAGTTTG......................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TGTTTTCGGCAC----------AAT-GATCT----T.................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TACATGTTTTCGGCAC----------AAT-GATCT----TC................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................CCACAAATCTAATATACCCCA........................................................................................................................................................................................................................................................................................................................................	21	20	0.25	5	0	5	0	0	0	0	0	0	0	0
............................CGGACGGACGGACAGACAGACATGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	3	0	1
................................CGGACGGACAGACAGACATGGCTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	3	0
................................CGGACGGACAGACAGACATGGCTCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	3	0
...............................................ACATGGCTCAATTGACTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................CT------------TTTACCACAAATCTAATATACCCC.........................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................T------------TTTACCACAAATCTAATATACCCC.........................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................................GGCTATTGATGCTGATCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	1	0	0	0	0	0	0	0	0
..............................GACGGACGGACAGACAGACATGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	2	0	0
...........................................................................................................................................................TTACCACAAATCTAATATACCCCAA.......................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............................ACGGACGGACAGACAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...................................ACGGACAGACAGACATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.......................................................CAATTGACTCGGCTATTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................TGACTCGGCTATTGATGCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
A---------------------------CGGACGGACGGACAGACAGACATGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..................................GACGGACAGACAGACATGGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................TAATATACCCCAATACT-CAT----T..........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.................................GGACGGACAGACAGACATGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................TTTACCACAAATCTAATATAC............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................TTTACCACAAATCTAATATACCCCAATA.....................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.............................GGACGGACGGACAGACAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0	0	0	0
.............................GGACGGACGGACAGACAGACATGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1

droPer2

GA------CGGACAGA------------CGGACGGACGGACAGACAGACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATAT----ATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACA-CA------TCCACTTTTACCACAAATCTAATATACCCCAATACT-CAT----TTTGAGTATCGGGTATAAACAGTG---------------GGTT------------------------------------------TTT----T-----------A------TGTGTTTCATTT--------CTTAAGAAGGTTAAAAATAGCA-----------------------------------------------CTTT---------TCTA-------------------------------------------TATATAGAGT---------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................CT-CAT----TTTGAGTATCGGGTATAAACA......................................................................................................................................................................................................................................................................................................	26	20	4.35	87	0	86	1	0	0	0
...........................................................................GCTGATCAAGAATAT----ATATACT......................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.75	15	0	15	0	0	0	0
.......................................................................................................................................................................................T-CAT----TTTGAGTATCGGGTATAAACA......................................................................................................................................................................................................................................................................................................	25	20	0.50	10	0	10	0	0	0	0
.......................................................................................................................................................................................T-CAT----TTTGAGTATCGGGTATAAAC.......................................................................................................................................................................................................................................................................................................	24	20	0.20	4	0	4	0	0	0	0
..........................................................................................................................................................................................AT----TTTGAGTATCGGGTATAAAC.......................................................................................................................................................................................................................................................................................................	22	20	0.15	3	2	1	0	0	0	0
..........................................................................................................................................................................................AT----TTTGAGTATCGGGTATAAACA......................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0
...................................................................................................CTTTATGGGGTCGGAAACGAT...................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
.........................................................................................................................................................................................CAT----TTTGAGTATCGGGTATAAAC.......................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................CT-CAT----TTTGAGTATCGGGTATAAAC.......................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
.....................................................................................................................................................................................ACT-CAT----TTTGAGTATCGGGTATAAACA......................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0

droWil2

GACCTT-GTATTCATA------------CG--------GAGAGACGGACAAGGCTAAATCGGCTCGGCTGTTGATGCTGA--AAAAATAT----TTATACTTTATGGGGTCGGAAAAGCTTCCTTCTGCCTGTTACATA-CA-------------TTTTGGGGACT----TGTACCATTTCACC-A------CATGGGTGCATGGTATAAAAATATA---------------AAAGTTAT--------AAA------TTT------------TAAAAATTGTACTTATTAATT----------TAAACTA--TTT------------------------------------------------------------------------------------------TTCA-------------------------------------------GGCATTGAATATCT----TGTAGAAAATAGATTGTTACGCCACGATCCTCAAGAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT----TGTAGAAAATAGATTGTTACGCCAC............	27	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGAATATCT----TGTAGAAAATAGA........................	25	1	1.00	1	1	0	0	0	0
..CCTT-GTATTCATA------------CG--------GAGAGACGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.................................................................................................................................CTGTTACATA-CA-------------TTTTGGGGACT----TG...............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGATTGTTACGCCACG...........	22	1	1.00	1	0	1	0	0	0
........................................................................................AT----TTATACTTTATGGGGTCGGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0
......................................................................................ATAT----TTATACTTTATGGGGTC............................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	1	0
.......................................................................................TAT----TTATACTTTATGGGGTCG...........................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0
.......................................................................................TAT----TTATACTTTATGGGG..............................................................................................................................................................................................................................................................................................................................................................................................................	18	11	0.09	1	0	1	0	0	0
....................................................................................................................................TTACATA-CA-------------TTTTGGGGACT----.................................................................................................................................................................................................................................................................................................................................................	20	17	0.06	1	0	1	0	0	0

droVir3

GATCCTTGCGTTCATAC--------ATACGGACGGACAGACAGGCGGACATGGCTAGAGCGACTCGGCTATTGATGCTGATCAAGAATAT----ATATACTTAATGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATA-CA------TTTCGATTTCGCACAAATACAATATACCCTTATACC-CATTTTTAATGGGTTCAGGGTATAAAAATGT----------------------------------ATTTAAAAAT------------AAAAA--T----AAACAATTT----------TGTTCCG--T-------------------------------------------------------------------------------------------------------------------------------------------TGCATTTTGTGACT----CGCTG--------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................CAAGAATAT----ATATACTTAATGGG...............................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.90	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	3	1	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CAAGAATAT----ATATACTTAATGGGG..............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.65	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	4	0	1	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CAAGAATAT----ATATACTTAATGGGGTC............................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	2	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TACATA-CA------TTTCGATTTCGCACAAAT.....................................................................................................................................................................................................................................................................................................................................................	26	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TGGGGTCGGAGATGCTTCCTTCTGCC.........................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TTCATAC--------ATACGGACGGACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TA-CA------TTTCGATTTCGCACAAATACAATA...............................................................................................................................................................................................................................................................................................................................................	28	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TA-CA------TTTCGATTTCGCACAAATACAAT................................................................................................................................................................................................................................................................................................................................................	27	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TTACATA-CA------TTTCGATTTCGCACAAA......................................................................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TA-CA------TTTCGATTTCGCACAAATA....................................................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CAAGAATAT----ATATACTTAATGGGGTCG...........................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TGTTACATA-CA------TTTCGATTTCGCACAA.......................................................................................................................................................................................................................................................................................................................................................	27	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................TGCTGATCAAGAATAT----ATATACTTAA...................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GATCCTTGCGTTCATAC--------ATAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................CTGTTACATA-CA------TTTCGATTTCGCACA........................................................................................................................................................................................................................................................................................................................................................	27	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................CAATATACCCTTATACC-CATT..............................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TGGGGTCGGAGATGCTTCCTTCT............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................TGCTGATCAAGAATAT----ATATACTTAAT..................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTAATGGGTTCAGGGTATAAAAATG....................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TCAAGAATAT----ATATACTTAATGGG...............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TCAAGAATAT----ATATACTTAATGGGGTC............................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TTCATAC--------ATACGGACGGACAGACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ATA-CA------TTTCGATTTCGCACAAATACAAA................................................................................................................................................................................................................................................................................................................................................	28	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................TGCTGATCAAGAATAT----ATATACTTAATC.................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................T----ATATACTTAATGGGGTCGGAGATGC....................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CTGATCAAGAATAT----ATATACTTAAT..................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TTCATAC--------ATACGGACGGACAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................ATGCTTCCTTCTGCCTGTTAC...................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TTCATAC--------ATACGGACGGACAGACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AGAATAT----ATATACTTAATGGGGTCGG..........................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CC-CATTTTTAATGGGTTCAGGGTA............................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
..........................................................................................................................CTTCTGCCTGTTACATA-CA------TTTCGATT...............................................................................................................................................................................................................................................................................................................................................................	27	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................TGATCAAGAATAT----ATATACTTAATGGG...............................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CAAGAATAT----ATATACTTAATGGGGT.............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................AATGGGTTCAGGGTATAAAAATG....................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCCTTGCGTTCATAC--------ATACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCCTTGCGTTCATAC--------ATACGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................TGCTGATCAAGAATAT----ATATACTTA....................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TTAATGGGGTCGGAGATGCTTCCT...............................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................GAGATGCTTCCTTCTGCCTGT......................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCCTTGCGTTCATAC--------ATACGGACGGACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................T----ATATACTTAATGGGGTCGGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GATCAAGAATAT----ATATACTTAATGGGG..............................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCCTTGCGTTCATAC--------ATACGGACGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TGGGGTCGGAGATGCTTCCTT..............................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CTTGCGTTCATAC--------ATACGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CTTCCTTCTGCCTGTTACA..................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CTGATCAAGAATAT----ATATACTTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................ACGGACGGACAGACAGGCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AT----ATATACTTAATGGGGTCGGAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................CGGCTATTGATGCTGATCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................GCTATTGATGCTGATCAAGAATAT----.............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................T----ATATACTTAATGGGGTCGGAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................TGATCAAGAATAT----ATATACTTAATGG................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACC-CATTTTTAATGGGTTCAGGG..............................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTGCGTTCATAC--------ATACGGACGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TCAAGAATAT----ATATACTTAATGGGGT.............................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ATGCTGATCAAGAATAT----ATATACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AATCGACGCGTTCATA------------CATACGGACAGACAGACGGACAGGGCCAAATCAACTCAGCTCGTCGCCCTGATCAAGAATAT----ATATACTTTGTGGGGTCTGCCACGCCTCCTTCTCCCTGTTACATA-CA-------------TTTCAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATAAAAAAAG---------------GGAAAATGC--------ACA------TTT------------TAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-ATTAAATTGTAATATTCCTCTTTTA-----	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........TTCATA------------CATACGGACAGACAGACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	3	0	0	0	0	0
..............................TACGGACAGACAGACGGACAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
..............................TACGGACAGACAGACGGACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
..............................................GACAGGGCCAAATCAACTCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
AATCGACGCGTTCATA------------CATACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0
..............TA------------CATACGGACAGACAGACGGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..............................................................................................ATATACTTTGTGGGGTCTGCCACGCC...................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
...........TCATA------------CATACGGACAGACAGACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
..........TTCATA------------CATACGGACAGACAGACGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1

droGri2

GATCTGTGTGTTCACA------------CAGAAAGACGGATAAACGGACTTGGCTATATCGACTTAACTGTTAACCCTGATCAATAATAT----ATATACTTCATGGGGTCGGAAATGCTTCCCTCTGCTTGTTACATA-CA-------------TTTGCAGAAAACCATTTTTGCCATTT-CT--------AATGGATTCAGGGTATAATAATAAT---------------AA----------------------------TATCAGCTTGAAGTATT-------------TCTTCCGACTTCGTTTTA--TTT-------------------------------------------------------------------------------------------TTC-------------------------------------------GGTGTTATATATTT-----------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_18885

2l:21025675-21025824 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.5	-20.4	-20.3