ID:

dsi_1888

 Coordinate:

2l:20079-20133 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-0.6 -0.6 -0.5

Flybase annnotation

exon [2l_20134_20220_-]; CDS [2l_20134_20220_-]; exon [2l_19885_20078_-]; CDS [2l_19885_20078_-]; intron [2l_20079_20133_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------##################################################
AATCAGGATCGGGACTTGATATCCACTCCCAACCGCGGAACTCATCCTCCGTAAGGAATCGTCTAATATTTTGTTGCGCAATAACATAACGTAAAATTTTTTAAGACGAACGCGGCCAACGCTTAAGCCATCGGGAATAATTGTATCAAAGGCTC
*****************************************************......(((........((((...)))).......))).*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 O001
Testis
 GSM343915
embryo
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
..TCAGGATCGGGACTTGATATCCAC................................................................................................................................. 24 0 1 70.00 70 68 0 2 0 0 0 0 0 0
..TCAGGATCGGGACTTGATATCCACTC............................................................................................................................... 26 0 1 28.00 28 24 1 2 0 1 0 0 0 0
.....................TCCACTCCCAACCGCGGAACTCATCCTC.......................................................................................................... 28 0 1 26.00 26 8 13 5 0 0 0 0 0 0
.......................CACTCCCAACCGCGGAACTCATCCTC.......................................................................................................... 26 0 1 21.00 21 11 7 3 0 0 0 0 0 0
.ATCAGGATCGGGACTTGATATCCAC................................................................................................................................. 25 0 1 20.00 20 20 0 0 0 0 0 0 0 0
...............................................TCCGTAAGGAATCGTCTAATATTT.................................................................................... 24 0 1 20.00 20 18 0 0 0 2 0 0 0 0
...................TATCCACTCCCAACCGCGGAACTCATC............................................................................................................. 27 0 1 19.00 19 8 10 0 0 0 1 0 0 0
...................TATCCACTCCCAACCGCGGAACTCA............................................................................................................... 25 0 1 17.00 17 3 14 0 0 0 0 0 0 0
..TCAGGATCGGGACTTGATATCCACTCC.............................................................................................................................. 27 0 1 17.00 17 7 0 10 0 0 0 0 0 0
.ATCAGGATCGGGACTTG......................................................................................................................................... 17 0 1 17.00 17 17 0 0 0 0 0 0 0 0
...................................................................................ACATAACGTAAAATTTTTTAAGACGAA............................................. 27 0 1 15.00 15 8 3 4 0 0 0 0 0 0
.ATCAGGATCGGGACTTGA........................................................................................................................................ 18 0 1 14.00 14 14 0 0 0 0 0 0 0 0
.....................TCCACTCCCAACCGCGGAACTCATCC............................................................................................................ 26 0 1 13.00 13 4 9 0 0 0 0 0 0 0
AATCAGGATCGGGACTTGATATCCAC................................................................................................................................. 26 0 1 12.00 12 12 0 0 0 0 0 0 0 0
...................................................................................ACATAACGTAAAATTTTTTAAGACG............................................... 25 0 1 11.00 11 5 1 3 1 1 0 0 0 0
..............................................................................................................CGCGGCCAACGCTTAAGCCATCGGGA................... 26 0 1 10.00 10 6 4 0 0 0 0 0 0 0
...................................................................................ACATAACGTAAAATTTTTTAAGACGA.............................................. 26 0 1 10.00 10 7 1 1 0 0 1 0 0 0
AATCAGGATCGGGACTTG......................................................................................................................................... 18 0 1 9.00 9 9 0 0 0 0 0 0 0 0
..............................................................................................................CGCGGCCAACGCTTAAGCCATCGGGAA.................. 27 0 1 9.00 9 9 0 0 0 0 0 0 0 0
.....................TCCACTCCCAACCGCGGAACTCATC............................................................................................................. 25 0 1 9.00 9 6 3 0 0 0 0 0 0 0
AATCAGGATCGGGACTTGA........................................................................................................................................ 19 0 1 8.00 8 8 0 0 0 0 0 0 0 0
..........................................................................TGCGCAATAACATAACGT............................................................... 18 0 1 8.00 8 8 0 0 0 0 0 0 0 0
.............................................................................................................ACGCGGCCAACGCTTAAGCCATCG...................... 24 0 1 8.00 8 8 0 0 0 0 0 0 0 0
...CAGGATCGGGACTTG......................................................................................................................................... 15 0 1 7.00 7 7 0 0 0 0 0 0 0 0
....................ATCCACTCCCAACCGCGGAACTCATCC............................................................................................................ 27 0 1 6.00 6 4 1 0 0 0 1 0 0 0
........................ACTCCCAACCGCGGAACTCATCCTC.......................................................................................................... 25 0 1 5.00 5 4 1 0 0 0 0 0 0 0
AATCAGGATCGGGACTTGATATC.................................................................................................................................... 23 0 1 5.00 5 5 0 0 0 0 0 0 0 0
...CAGGATCGGGACTTGA........................................................................................................................................ 16 0 1 5.00 5 5 0 0 0 0 0 0 0 0
.............................................................................................................ACGCGGCCAACGCTTAAGCCATCGG..................... 25 0 1 5.00 5 5 0 0 0 0 0 0 0 0
..........................TCCCAACCGCGGAACTCATCCTC.......................................................................................................... 23 0 1 5.00 5 5 0 0 0 0 0 0 0 0
..............................................CTCCGTAAGGAATCGTCTAATATTT.................................................................................... 25 0 1 5.00 5 3 2 0 0 0 0 0 0 0
.ATCAGGATCGGGACTT.......................................................................................................................................... 16 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................CGTAAGGAATCGTCTAATATTTTGT................................................................................. 25 0 1 4.00 4 1 0 3 0 0 0 0 0 0
.........................................................................................................................................TAATTGTATCAAAGGCTC 18 0 1 4.00 4 4 0 0 0 0 0 0 0 0
..........................................................................TGCGCAATAACATAACG................................................................ 17 0 1 4.00 4 4 0 0 0 0 0 0 0 0
..............................................................................................................................GCCATCGGGAATAATTGTATCAAAGGC.. 27 0 1 3.00 3 2 1 0 0 0 0 0 0 0
...............................................TCCGTAAGGAATCGTCTAATATTTTG.................................................................................. 26 0 1 3.00 3 2 1 0 0 0 0 0 0 0
...................TATCCACTCCCAACCGCGGA.................................................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0
.....................TCCACTCCCAACCGCGGA.................................................................................................................... 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0
............................................................................................................................................TTGTATCAAAGGCTC 15 0 1 3.00 3 3 0 0 0 0 0 0 0 0
...................TATCCACTCCCAACCGCGGAACTCATCC............................................................................................................ 28 0 1 3.00 3 1 2 0 0 0 0 0 0 0
.................................................CGTAAGGAATCGTCTAATATTTTGTTGC.............................................................................. 28 0 1 3.00 3 1 0 2 0 0 0 0 0 0
.............................................................................................................ACGCGGCCAACGCTTAAGCCATCGGG.................... 26 0 1 3.00 3 1 2 0 0 0 0 0 0 0
..............................................................................................................CGCGGCCAACGCTTAAGCCATCGG..................... 24 0 1 3.00 3 2 1 0 0 0 0 0 0 0
.............................................................................................................ACGCGGCCAACGCTTAAGCCATCGGGA................... 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0
...................................................TAAGGAATCGTCTAATATTTTGTTGCGC............................................................................ 28 0 1 3.00 3 1 0 2 0 0 0 0 0 0
....................ATCCACTCCCAACCGCGGAACTCATC............................................................................................................. 26 0 1 3.00 3 2 1 0 0 0 0 0 0 0
...................................................TAAGGAATCGTCTAATATTTTGTTGC.............................................................................. 26 0 1 3.00 3 1 0 2 0 0 0 0 0 0
.........................................................................................................................................TAATTGTATCAAAGGCT. 17 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..............................................................................................................CGCGGCCAACGCTTAAGCCATCGGGAAA................. 28 1 1 3.00 3 3 0 0 0 0 0 0 0 0
..............................................................................................................CGCGGCCAACGCTTAAGCCATCGGG.................... 25 0 1 3.00 3 1 2 0 0 0 0 0 0 0
.............................................................................................................ACGCGGCCAACGCTTAAGCCATCGGGAA.................. 28 0 1 3.00 3 1 2 0 0 0 0 0 0 0
...................TATCCACTCCCAACCGCGGAACTCAT.............................................................................................................. 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0
...............................................................................................................................CCATCGGGAATAATTGTATCAAAGGC.. 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.......................CACTCCCAACCGCGGAACTCATCC............................................................................................................ 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.......................CACTCCCAACCGCGGAACTC................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.....................TCCACTCCCAACCGCGGAACTCATCCT........................................................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0
...................................................................................ACATAACGTAAAATTTTTTAAGACGAAC............................................ 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0
...........................................................................................................................TAAGCCATCGGGAATAATTGTATCAAA..... 27 0 1 2.00 2 1 0 0 0 0 0 1 0 0
.....................................................................................................TAAGACGAACGCGGCCAACGCT................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0
....................ATCCACTCCCAACCGCGGAACTCAT.............................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..........................................................................TGCGCAATAACATAACGTA.............................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................................................................GCGGCCAACGCTTAAGCCATCGGGA................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0
..................................................................................................................GCCAACGCTTAAGCCATCGGGAATAAT.............. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.....GGATCGGGACTTGATATCCAC................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................TTTTAAGACGAACGCGGCCAACGC................................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...................................................................................ACATAACGTAAAATTTTTTA.................................................... 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0
...........................................................................................TAAAATTTTTTAAGACG............................................... 17 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................TTAAGCCATCGGGAATAATT............. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.ATCAGGATCGGGACT........................................................................................................................................... 15 0 2 2.00 4 4 0 0 0 0 0 0 0 0
.................................................CGTAAGGAATCGTCTAATA....................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...................................................................................................TTTAAGACGAACGCGGCCAACGCT................................ 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................TCCGTAAGGAATCGTCTAATAT...................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................TCCGTAAGGAATCGTC............................................................................................ 16 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................CTTAAGCCATCGGGAA.................. 16 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................ATCGTCTAATATTTTGTTGC.............................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..TCAGGATCGGGACTTGATA...................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
AATCAGGATCGGGACTTGATATCC................................................................................................................................... 24 0 1 2.00 2 1 0 1 0 0 0 0 0 0
..........................................CATCCTCCGTAAGGAATCGTCTAATA....................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...CAGGATCGGGACTTGATATCCACTC............................................................................................................................... 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0
...................TATCCACTCCCAACCGCGGAACTC................................................................................................................ 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..........................................................................................................................TTAAGCCATCGGGAATAATTGTATC........ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.....................................................................................................TAAGACGAACGCGGCCAACGCTTAAGC........................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...................TATCCACTCCCAACCGCGGAACTCATCCT........................................................................................................... 29 0 1 2.00 2 0 2 0 0 0 0 0 0 0
............................................................GTCTAATATTTTGTTG............................................................................... 16 0 1 2.00 2 2 0 0 0 0 0 0 0 0
............................................TCCTCCGTAAGGAATCGTCTAATATTT.................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0
AATCAGGATCGGGACT........................................................................................................................................... 16 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..............................................................................................................CGCGGCCAACGCTTAAGCCATC....................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................TTAAGACGAACGCGGCCAACGCTTA.............................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
ATTCAGGATCGGGACTTGA........................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................TATCCACTCCCAACCGCGGAACTCCTCC............................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................GCGGCCAACGCTTAAGTCATCGGGAA.................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................TGCGCAATAACATAACGTAAAATT......................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................CCACTCCCAACCGCGGAACTCATCCTC.......................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................ATTCCCAACCGCGGAACTCATCCTC.......................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.ATCAGGATCGGGACTTGATATCCGA................................................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................CGCGGAACTCATCCTCC......................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................TCCGTAAGGAATCGTCTAATATCT.................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................CCCAACCGCGGAACTCATCCTC.......................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.ATCAGGATCGGGACTTGAT....................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................TCCGTAAGGAATCGTCTAATATTTTA.................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................AACGCTTAAGCCATCGGGAATAAT.............. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................CACTCCCAACCGCGGAACTCATC............................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................TATCCACTCCCAACCGCGGAACTCATGG............................................................................................................ 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................TAAGCCATCGGGAATAATTGTATC........ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................GTAAAATTTTTTAAGACGAA............................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........CGGGACTTGATATCCACTCCCAACCGC....................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................GGCCAACGCTTAAGCCATCGGGAATAAT.............. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................ACATAACGTAAAATTTTTTAAGGCG............................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
AATCAGGATCGGGACTTGATATCCA.................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................CGCGGAACTCATCCTCCGTAAGGAAGC............................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................CGCGGCCAACGCTTAAGCCATCGGAA................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................AGCCATCGGGAATAATTGTATCAA...... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................TCCACTCCCAACCGCGGAACCCATCC............................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................TCCTCCGTAAGGAATCGTC............................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................AACGCTTAAGTCATCGGGAATAATT............. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................ACGAACGCGGCCAACGC................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................TGATATCCACTCCCAACCGCGGAACT................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................TCCACTCCCAATCGCGGAACTTATCC............................................................................................................ 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................AAAATTTTTTAAGACGGACGCGGC....................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................ATCGTCTAATATTTTGTTGCGCAATA........................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..TCAGGATCTGGACTTGATATCCACTCC.............................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................TATCCACTCCCAACCGCGGAACTCATCT............................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..TCAGGATCGGGACTTGATATCCACTCCC............................................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................CGAACGCGGCCAACGCTTA.............................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................ACGCTTAAGCCATCGGGAATAATTG............ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................ACGCGGCCAACGCTTAAGCCATCGT..................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......ATCGGGACTTGATATCCACTC............................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..TCAGGATCGGGACTTGATATCC................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..TCAGGATCGGGACTTGATGTCCAC................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................CACTCCCAACCGCGGA.................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................GGCCAACGCTTAAGCCATCGGGA................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................ATTTTTTAAGACGAACGCGGC....................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................TGCACTCCCAACCACGGAACTCATCCTC.......................................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0
AATCAGGATCGGGACTTAA........................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................GTTGCGCAATAACGTAACG................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................GCGGAACTCATCCTCCGTAAGGAATC............................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................ATCGTCTAATATTTTG.................................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............TTGATATCCACTCCCAACCGCGGAACTCA............................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...CAGGATCGGGACTTGATATCCACTCC.............................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................................................CATCGGGAATAATTGTATCAAAGGC.. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................TTTTAAGACGAACGCGGCCAACGCT................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................TGATATCCACTCCCAACAGCGGA.................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................CCCAACCGCGGAACTCA............................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................AAAATTTTTTAAGACGA.............................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................TATCCACTCCCAACCGCG...................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................AGCCATCGGGAATAATTGTATCAAAGGC.. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................TAAGACGAACGCGGCCAACGC................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................CCGCGGAACTCATCCT........................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................CGCGGCCAACGCTTAAGCC.......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................ATATTTTGTTGCGCAATA........................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................CACTCCCAACCGCGGAACTCATCCTA.......................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................ATTTTTTAAGACGAACGCGGCCAACGC................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................GTAAAATTTTTTAAGACGA.............................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................AACCGCGGAACTCATC............................................................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TAACGTAAAATTTTTTAAGACGAA............................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................ACTCCCAACCGCGGAACTCATCC............................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................CCCAACCGCGGAACTCATCC............................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................TCCACTCCCAACCGCGGAACTCAT.............................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................CACTCCCAACCGCGGAACTCATCCT........................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.ATCAGGATCGGGACTTGATATCCACT................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..TCAGGATCGGGACTT.......................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................CGTAAGGACTCGTCTAATATTTTGTTGC.............................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................TCCACTCCCAACCGCTGAACTCATCCTC.......................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................ACGCGGCCAACGCTT............................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................CGTAAGGAATCGTCTAATATTTTGTT................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................TATCCACTCCCAACCGC....................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................TCCGTAAGGAATCGTCTAATATTTTGT................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................TCCCAACCGCGGAACTCATCCTCCG........................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................TTTTTAAGACGAACGCGGCCAACGC................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................TCCACTCCCAACCGCGGAACTC................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................CTCCGTAAGGAATCGTCTAATATTTA................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................ATTTTTTAAGACGAA............................................. 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TAACGTAAAATTTTTTAAGACGAACGC.......................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................TCCTCCGTAAGGAATCGTCTAATA....................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................TCCGTAAGGAATCGTCTAATA....................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................AGGAATCGTCTAATATT..................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................TAAGGAATCGTCTAATATTTTGTTG............................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................AAATTTTTTAAGACGA.............................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................TCGTCTAATATTTTGTTGCGC............................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................TTTTTAAGACGAACGCGGCCAACGCC................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................TCATCCTCCGTAAGGAATCGTC............................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................TCCGTAAGGAATCGTCCAATATTT.................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................GTCTAATATTTTGTTGCGCA........................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................CTTAAGCCATCGGGAATA................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................TTAAGACGAACGCGGCCAACGCTTGAGC........................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................CGTAAGGAATCGTCTAATATTT.................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................CGTAAGGAATCGTCTAATATTTTGTTG............................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................ACGCGGCCAACGCTTGAGCCATCGGG.................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...CAGGATCGGGACTTGATA...................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................AAGACGAACGCGGCCAACGCT................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................CCCAACCGCGGAACTCATC............................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................CAACGCTTAAGCCATCGGGA................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................TCCAATCCCAACCGCGGAACTCATCCTC.......................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................TAATTGTATCAAAGGC.. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................ATAATTGTATCAAAGGCTC 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................CCTCCGTAAGGAATCGTCTAATATTT.................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................ACGCGGCCAACGCTTAAGCCATCGGT.................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.ATCAGGATCGGGACTTGCTGTACA.................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................ACGCGGCCAACGCTTAAGCCATCGGTA................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................AAGACGAACGTGGCCACCGATT............................... 22 3 3 1.00 3 0 0 0 0 0 0 0 0 3
.......................CACTCCCAACCGCGGAACTCATCCTCCG........................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...TCAGATCGGGACTTGATATCCACTCCC............................................................................................................................. 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................ATCCTCCGTAAGGAATCGTCTAATA....................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.ATCAGGATCGGGACTTGATATCCACTCC.............................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................TAAAATTTTTTAAGACGAA............................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................TAAAATTTTTTAAGACGAACGCGGC....................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................TTTAAGACGAACGCGGCCAACGCTTA.............................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..TCAGGATCGGGACTTGATATCCACTCA.............................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................TAACATAACGTAAAATTTTTTAAGA................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................GGAATAATTGTATCAAAGGCT. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..TCAGGATCGGGACTTGA........................................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......ATCGGGACTTGATATCCACTCCCAACCGC....................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................ATCCACTCCCAACCGCTGAACTCATCC............................................................................................................ 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.ATCAGGATCGGGACTTGG........................................................................................................................................ 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................TAAGACGAACCGGGCGAACG.................................. 20 3 2 0.50 1 0 0 0 0 0 0 0 1 0
..........................................................................................................CGAACGCGGCCAACGA................................. 16 1 2 0.50 1 0 0 0 0 0 0 0 1 0
...CAGGATCGGGACTTGAC....................................................................................................................................... 17 1 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................................................................................AAGACGATCGCGGCC...................................... 15 1 7 0.14 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTAGTCCTAGCCCTGAACTATAGGTGAGGGTTGGCGCCTTGAGTAGGAGGCATTCCTTAGCAGATTATAAAACAACGCGTTATTGTATTGCATTTTAAAAAATTCTGCTTGCGCCGGTTGCGAATTCGGTAGCCCTTATTAACATAGTTTCCGAG
***************************************************************......(((........((((...)))).......))).***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 GSM343915
embryo
 O001
Testis
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.......................................TGAGTAGGAGGCATTCCTTAGCAGATT......................................................................................... 27 0 1 368.00 368 360 3 5 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGCAGAT.......................................................................................... 26 0 1 152.00 152 150 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................ATTCGGTAGCCCTTATTAACATAG........ 24 0 1 44.00 44 41 2 0 1 0 0 0 0 0 0 0
........................................GAGTAGGAGGCATTCCTTAGCAGATT......................................................................................... 26 0 1 29.00 29 28 1 0 0 0 0 0 0 0 0 0
............................................AGGAGGCATTCCTTAGCAGATTAT....................................................................................... 24 0 1 20.00 20 12 7 0 0 0 0 0 1 0 0 0
..........................................................................................................................AATTCGGTAGCCCTTATTAACATAG........ 25 0 1 12.00 12 12 0 0 0 0 0 0 0 0 0 0
.....................................................................AAACAACGCGTTATTGTATTGCAT.............................................................. 24 0 1 9.00 9 2 7 0 0 0 0 0 0 0 0 0
...............................TGGCGCCTTGAGTAGGAGGCATTCCT.................................................................................................. 26 0 1 7.00 7 5 2 0 0 0 0 0 0 0 0 0
........................................GAGTAGGAGGCATTCCTTAGCAGAT.......................................................................................... 25 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGCAG............................................................................................ 24 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGCAGA........................................................................................... 25 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
................................................................................................AAAAAATTCTGCTTGCGCCGGTTGCGA................................ 27 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
......CTAGCCCTGAACTATAGGTGAGGGTT........................................................................................................................... 26 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGGTAGCCCTTATTAACATAGTTT..... 25 0 1 5.00 5 3 0 0 0 2 0 0 0 0 0 0
......CTAGCCCTGAACTATAGGTGAGGGT............................................................................................................................ 25 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
..........................AGGGTTGGCGCCTTGAGTAGGAGGCAT...................................................................................................... 27 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0
...................ATAGGTGAGGGTTGGCGCCTTGAGT............................................................................................................... 25 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0
...........................................TAGGAGGCATTCCTTAGCAGATT......................................................................................... 23 0 1 4.00 4 3 0 0 1 0 0 0 0 0 0 0
............................................................................................................................TTCGGTAGCCCTTATTAACATAG........ 23 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0
.................................................................................................AAAAATTCTGCTTGCGCCGGTTGCGA................................ 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
...............................TGGCGCCTTGAGTAGGAGGCATTCCTT................................................................................................. 27 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
........................................GAGTAGGAGGCATTCC................................................................................................... 16 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
................................GGCGCCTTGAGTAGGAGGCATTCCT.................................................................................................. 25 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
............................................................................................................TTGCGCCGGTTGCGAAT.............................. 17 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATTCTGCTTGCGCCGGTTGCGAATT............................. 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
................................................................................................AAAAAATTCTGCTTGCGCCGGTTG................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTAAAAAATTCTGCTTGCGCCGGT..................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATTCGGTAGCCCTTA................. 15 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.................CTATAGGTGAGGGTTGGCGCCTTGAGT............................................................................................................... 27 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................GAATTCGGTAGCCCTTATTAACATAG........ 26 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
.....................................CTTGAGTAGGAGGCATTCCTTAGCAG............................................................................................ 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.....................AGGTGAGGGTTGGCGCCT.................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....CCTAGCCCTGAACTATAGGTGAGGGT............................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........................AGGGTTGGCGCCTTGAGTAGGAGG......................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................AGGTGAGGGTTGGCGCCTTGA................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................TTGAGTAGGAGGCATTCCTTAGCAGAT.......................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................AACAACGCGTTATTGTATTGCAT.............................................................. 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.............TGAACTATAGGTGAGGGTTGGCGCCT.................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...................ATAGGTGAGGGTTGGCGC...................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................CTTGAGTAGGAGGCATTCCTTAGCAGAT.......................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........CCTGAACTATAGGTGAGGGTTGGCGCCT.................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................AAAACAACGCGTTATTGTATTGCAT.............................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTCGGTAGCCCTTATTA.............. 17 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CGGTTGCGAATTCGGTAGCCCTTAT................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATTCGGTAGCCCTTATTAACATAGTTT..... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................AAAAAAATTCTGCTTGCGCCGGT..................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGCGAATTCGGTAGCCCTTATTAACAT.......... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................TATAGGTGAGGGTTGGCGCCTTGAGT............................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GAATTCGGTAGCCCTTA................. 17 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTGGGAGGCATTCCTTAGCAGATT......................................................................................... 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGGTAGCCCTTATTAACATAG........ 22 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0
...........................................................................CGCGTTATTGTATTGCAT.............................................................. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GTAGCCCTTATTAACATAG........ 19 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
........................TGAGGGTTGGCGCCTTGAGTA.............................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................TAGGAGGCATTCCTTAGCAGA........................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGCA............................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAGGTAGCCCTTATTAACATAGTTT..... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGCGCCGGTTGCGAATTCGGTAG....................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................AAATTCTGCTTGCGCCGGT..................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................TGGTTGGCGCCTTGAGTAGGAGGCAT...................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGCAGAGT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................AAAAATTCTGCTTGCGCCGGT..................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATAAAAAAATTCTGCTTGCGCCGGTT.................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGCATTTTAAAAAATTCTGCT.............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGGTAGCCCTTATTA.............. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTTAAAAAATTCTGCT.............................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................GAGTAGGAGGCATTCCTTAGC.............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.TAGTCCTAGCCCTGAACTAT...................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................ATAGGTGAGGGTTGGCGCCTT................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TCTGCTTGCGCCGGTT.................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................GGGTTGGCGCCTTGAGTA.............................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................TGGAGGCATTCCTTAGCAGATTA........................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GCGCCGGTTGCGAATTCGGTA........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................GAGTATGAGGCATTCCTTAGCAGATT......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................TGGCGCCTTGAGTAGGAGGCATTCCTTA................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................CAACGCGTTATTGTATTGCAT.............................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGCAGATA......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATTCTGCTTGCGCCGGTTGCGAAT.............................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATTCGGTAGCCCTTATTAACATCG........ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATTCTGCTTGCGCCGGTT.................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGCAGAC.......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CCGGTAGCCCTTATTAACATAGTTT..... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTACGAGGCATTCCTTAGCAGATT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................GTGAGGGTTGGCGCCTTGAGA............................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................TAGGTGAGGGTTGGCGCCTTGAGT............................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................TAGTAGGAGGCATTCCTTAGCAGA........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGCAGAAT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TAAAAAATTCTGCTTGCGCCGGT..................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................AGGGTTGGCGCCTTGAGTAGGAGTCAT...................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................AAAACAACGCGTTATTGTATT.................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGCAGGAGGCATTCCTTAGCAGAT.......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGAAGAT.......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAATAGGAGGCATTCCTTAGCAGATA......................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................AAGTAGGAGGCATTCCTTAGCAGATT......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................TGGCGCCTTGAGTAGGAGGCATT..................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGCGAATTCGGTAGCCCTTA................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................TTGCGCCGGTTGCGA................................ 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................CTGCTTGCGCCGGTTGCGAATTCGGT......................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................AGTAGGAGGCATTCCTTAGCAGATT......................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................GCGTTATTGTATTGCAT.............................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGCAGGTT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................AAAAAAATTCTGCTTGCGCCGGTTGCGA................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................GCCGGTTGCGAATTCGGTAGCCCTT.................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................TGGCGCCTTGAGTAGGAGGCACTCCTT................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATTCGGTAGCCCTTATTAACATAGGGC..... 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................TAGGAGGCATTCCTTAGCAGATTAT....................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................CTATAGGTGAGGGTTGGCGCCT.................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATTCGGTAGCCCTTATTA.............. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................AAATTCTGCTTGCGCCGGTTG................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........CCTGAACTATAGGTGAGGGTTGGCGC...................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................TGAGGGTTGGCGCCTT................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................TGGCGCCTTGAGTAGGAG.......................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.TAGTCCTAGCCCTGAACTATAGGT.................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................AAAAAATTCTGCTTGCGCCGG...................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................TTAGGTGAGGGTTGGCGCCTTGAGT............................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............AACTATAGGTGAGGGTTGGCG....................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TAAGTAGGAGGCATTCCTTAGCAGAT.......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................TTGAGTAGGAGGCATTCCTTAGCAGA........................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................GAGGGTTGGCGCCTTGAGTAGGAGGCA....................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................ACCTGAGTAGGAGGCATTCCTTAGCAGATT......................................................................................... 30 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................GGCCTTGAGTGGGAGGCATTCCTT................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................GCGCCTTGAGTAGGAGGCAT...................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................TAGGAGGCATTCCTTAGCAGATTA........................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTGGCAGATT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................GGTGAGGGTTGGCGCCTTGAGT............................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................GCCTTGAGTAGGAGGCATTC.................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................GAGGGTTGGCGCCTTGAGTAGGAGGCAT...................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................ATAAAACAACGCGTTATTGTA.................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGCAGACT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................AAAAAAAATTCTGCTTGCGCTGGT..................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................AGGAGGCATTCCTTAGCA............................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TCAGTAGGAGGCATTCCCTAGCAGA........................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................AAAAAATTCTGCTTGCGCCGGTT.................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTCAGCAGATT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGCGAATTCGGTAGCCCTTATTAACATAG........ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGCAGGAGGCATTCCTTAGCAGATT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGTGTAGGAGGCATTAATTAGCAGAT.......................................................................................... 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................ACAACGCGTTATTGTAT................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................TAGGTGAGGGTTGGCGTCTTGAGT............................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......CTAGCCCTGAACTATAGGTGA................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................GGAGGCATTCCTTAGCAGAT.......................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGCAGATTA........................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................TAGCAGATTATAAAACAACGCGTTAT........................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................AAGGTGAGGGTTGGCGCCTTGAGT............................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........CCCTGAACTATAGGTGAGGGT............................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CGGTTGCGAATTCGGTAGCCCTTATT............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...GTCCTAGCCCTGAACTA....................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................ACGCGTTATTGTATTGCAT.............................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................TCGGTTGCGAATTCGGTAGCCCTTATT............... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................TTGAGGGTTGGCGCCTTGAGT............................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TCCCGGGTTGCGAATTCGGTAGCCCTTA................. 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................AAAACAACGCGTTATTGTA.................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGCATATT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGTCATTCCTTAGCAGATT......................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....CCTAGCCCTGAACTATAGGTGAGGGTT........................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCTTTAGCAGATT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................TTGGCGCCTTGAGTAGGAGGCATTCCTT................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAAGCATTCCTTAGCAGATT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................AGGAGGCATTCCTTAGCAG............................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................GTTGGCGCCTTGAGTAGGAGGCATT..................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTTAAAAAATTCTGCTTGCGCCGGT..................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CGGTTGCGAATTCGGTAGCCC.................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................GGAGGCATTCCTTAGC.............................................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAATTCTGCTTGCGC......................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AATTCGGTAGCCCTTA................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........AGCCCTGAACTATAGGTGAGGGT............................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................AAAAAATTCTGCTTGCGCCGGT..................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................AACAACGCGTTATTGTA.................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................TGTAGGAGGCATTCCTTAGCAGATTA........................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................AAAAATTCTGCTTGCGCCGGTT.................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................TAGGAGGCATTCCTTAGCAGAT.......................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............TGAACTATAGGTGAGGGTTGACGCCT.................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................GTGAGGGTTGGCGCCTTGAGT............................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................TTCTGCTTGCGCCGGTTGCGA................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................GGTGAGGGTTGGCGCCT.................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................AGAGGGTTGGCGCCTTGAGTAGGAGGCAT...................................................................................................... 29 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................TGCGAATTCGGTAGCCC.................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................GCGCCTTGAGTAGGAGGCATT..................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......CTAGCCCTGAACTATAGGTG................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................AGGTGAGGGTTGGCGCCTT................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TTAGTAGGAGGCATTCCTTAGCAGATT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................GGGTTGGCGCCTTGAGTAGGAGGCAT...................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................AGGCATTCCTTAGCAGATTAT....................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGGATTCCTTAGCAGATT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TAAAAAATTCTGCTTGCGCCGGTT.................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................AGGGTTGGCGCCTTGAGTAGGAGGCATT..................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................TAAAACAACGCGTTATTGTATTGC................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCCTAGCAGATT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCGGTAGCCCTTATTAACATAGTTT..... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................TTAAAAAATTCTGCTTGCGCCGGTTGCGAAT.............................. 31 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................TTAAAAAATTCTGCTTGCGCCGGTT.................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTAAAAAATTCTGCTTGCGCCGGTTG................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................................TGAGTAGGAGGCGTTCCTTAGCAGATT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................AGGAGGCATTCCTTAG............................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................GAGTAGGAGGCATTCCTTAGCAGA........................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGGGTAGGAGGCATTCCTTAGCAGAT.......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CGTTTGCGAATTCGGTAGCCCTTATT............... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................TGCGTAGGAGGCATTCCTTAGCAGAT.......................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................CGTGAGTAGGAGGCATTCCTTAGCAGATT......................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................CGAGTAGGAGGCATTCCTTAGCAGAT.......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................AAACAACGCGTTATTGTATT.................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TGAGTAGGAGGCATTCCTTAGC.............................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................CTTGAGTAGGAGGCATTCCTTAGCAGA........................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................CTGCTTGCGTCGGTTGCGAAT.............................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....TATAGCCCTGAACTATAGGTGAGGGT............................................................................................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ACTCGGTAGCCCTTATTAACATAG........ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATTCGGTAGCCCTTAT................ 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................CTTGAGTAGGAGGCATTCCTTAGCA............................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................GAGTAGGAGGCATTCCTT................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................GAGGGTTGGCGCCTTGAGTAG............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATTCGGTAGCCTTTATTAACATAGTTT..... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTTAAAAAATTCTGCTTGCGCCGGTT.................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATTCGGTAGCCCTTATTAACATAGT....... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGCGAATTCGGTAGCCCTTATT............... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................AATTTCTGCTTGCACCGGT..................................... 19 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
.......................................TGAGTAGGAGGCGTTCCTTGGCAAAT.......................................................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................TAAAAGTTCTGCTTGCACCGGT..................................... 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................TCTGCTTGCGCCGGT..................................... 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................TAAAACAACGCGTTA......................................................................... 15 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..............GAACTATAGCTGAGAGT............................................................................................................................ 17 2 7 0.29 2 0 0 0 0 0 2 0 0 0 0 0
.............TGAACTATAGCTGAG............................................................................................................................... 15 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................AAAGGTTCTGCTTGCACCGGT..................................... 21 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................AAGCCCTTTTTAACATAG........ 18 2 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................AAAGGTTCTGCTTGCACCGG...................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................AAAAAAGTTCTGCTTGCACC........................................ 20 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0
..............GAACTATAGCTGAGAGTCG.......................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................GCGAGTTCGGTGGCCC.................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:20029-20183 - dsi_1888 AATCAGGATCGGGACTTGAT------ATCCACTCCCAACCGCGGAACTCATCCTCCGTAAGGAATCGT---CTAATATTT-----------T-GTTGC---------------GC--AA-----------------------------------TA-ACA----T---------AACGTAAA--ATTTT---TTAAGACGAACGCGGCCAACGCTTAAGCCATCGGGAATAATTGTATCAAAGGCTC
droSec2 scaffold_14:33790-33944 - AATCAGGATCGAGACTTGAT------ATCCACTCCCAACCGCGGAACTCATCCTCCGTAAGGAATCGT---CTAATATTT-----------T-GTTGC---------------GC--AA-----------------------------------TA-AGA----T---------AACGTAAA--ATTTT---TTAAGACGAACGCGGCCAACGCTTAAGCCATCGGGAATAATTGTATCAAAGGCTC
dm3 chr2L:28877-29031 - AATCAGGATCGAGACGTGAT------ATCCACGCCCAACCGCGGAACTCATCCTCCGTAAGGAATCGT---CTAATATTT-----------T-GTTGC---------------GC--AG-----------------------------------TA-AGA----T---------AACGTAAA--ATTTT---TTAAGACGAACGCGGCCAACACTTAAGCCATCGGGAACAATTGTATCAAAGGCTC
droEre2 scaffold_4929:55046-55200 - AATCAGGATAGAGACTTGCT------CTCCACGCCCAACCGCGGAACTCACCCACCGTAAGGAATCAT---TTAATATTT-----------T-GCTCC---------------GC--AG-----------------------------------TA-TAA----T---------TTCGTAAA--ACTTT---TTTAGACGAACGCGCCCCACGCTCAAGCCATCGGGCACAATTGTATCAAAGGCTC
droYak3 2L:23383-23537 - AATCAGGATAGAGACTTGCA------ATCCACGCCCAACCGCGGAACTCACCCACCGTAAGCAATCAT---TTAATATTT-----------T-TTTGC---------------TC--AG-----------------------------------TA-AGA----T---------AGCTTAAA--ACTTT---TTAAGACGAACACGCCCCACGCTTAAGCCATCGGGGACAATTGTATCAAAGGCTC
droEug1 scf7180000409154:25474-25620 - AATCAGGATCGAGATGTGG---------------CGAACCGTGGAACTCACCCTCCGTAAGTATTTATT--TTACTATAT-----------G-GCGTC---------------AC--GA-----------------------------------TT-ATA----T---------GCAATATC--ATTTC---TTAAGACGAACACGTCCTACACTAAAACCTTCGGGCACCATCGTTTCAAAGGCAC
droBia1 scf7180000301455:33301-33462 - AATCAGGATCGGGACGTACT------CTCTACGCCAAATCGTGGAACTCACCCACCGTAAGCATATATAAATTAATATAT---AC--TA--A-GTTCC---------------TT--TG-----------------------------------TG-ACT----T---------GAAATCTT--ATTTG---CGAAGACGAACACGACCCACACTCAAGCCATCGGGCACGATCGTATCAAAGGCGC
droTak1 scf7180000413017:541291-541445 + AATCAGGATAGAGATGTACT------CTCAACGCCGAACCGTGGAACTCACCCACCGTAAGAATACAAT--TTAATACAT-----------A-GTGAA---------------GC--AG-----------------------------------TT-AAA----T---------CAAATGTA--AT-TT---TTAAGACGAACACGTCCCACACTGAAACCATCCGGCACCATTGTGTCAAAGGCCC
droEle1 scf7180000490216:10930-11088 + AATCAGGATAGAGACGTACT------TTCTACGCCGAACCGCGGAACTCACCCACCGTAAGCAAATA-----TAATATTT---TCATTAATG-ATGAC---------------CC--AG-----------------------------------TA-AAA----G-------------TAAATCTTTTT---TTTAGACGGACACGCCCGACACTGAAGCCATCGGGAACCATTGTGTCAAAAGCGC
droRho1 scf7180000779252:102013-102168 + AATCAGGATCGAGATGTACT------CTCTACGCCGAACCGCGGAACTCACCCACCGTAAGCATAAATG--TTGATATTC-----------A-AAGCC---------------CC--AG-----------------------------------CT-AAA----G---------TAAATTAA--ATTTT---CTAAGACGAACACGCCCCACACTGAAGCCATCGGGCACCATTGTATCGAAGGCAC
droFic1 scf7180000453904:1460715-1460871 - AACCAAGACCGAGACGTCCC------ATCTACGCCAAACCGCGGAACCCACCCACCGTAAGCAAGTATT--TAAAAATAT-----------T-GTGAC---------------AT--AG-----------------------------------TA-AAA--A-T---------GAAATATT--TTTAT---TTAAGCCGAACTCGTCCCACACTGAAGCCGTCGGGCACCATTGTGTCAAAGGCCC
droKik1 scf7180000302401:513305-513465 + AACCAGGATCGGGACGTGGT------CGCCACACCGAACCGCGGAACGCACCCACCGTAAGCCCTAGG----------TTTCTTGAGTAACACATGCCGCT------------GG--AA-----------------------------------TT-AAA----T---------GAATTCT----TCTC---TTCAGACGAACCAGGCCCACACTAAAGCCGTCGGGAACCATCGTGTCGAAGGCCC
droAna3 scaffold_12916:2012498-2012654 - AACCAGGACCGGGATGTCGT------CTCGACCCCGAACCGTGGCACTCATCCGCCGTAAGTATTCCGATC------A------G------------------------------TG--GCTTA-----------GTATG--AGT---------------GTCCTCACT---------TATG--GC-TCCGATATAGACGCACCCGCCCCACGCTGAAGCCCTCTGGAACCATCGTCTCGAAGGCCC
droBip1 scf7180000396728:666559-666715 - AACCAGGACCGGGATGTCGT------CTCGACCCCGAACCGTGGCACTCATCCGCCGTGAGTATTCCG------ATCTGT-----------G-GTTGA---------------G----------------------TATG--TGAA-----------TCC----T---------AACTGAAG--CC-TTCCATGTAGACGCACCCGGCCCACGTTGAAGCCCTCTGGAACCATCGTCTCAAAGGCCC
dp5 4_group2:117808-117972 + AATCAGGATCGGGACGTTGT------CGCTACAGCCAACCGAGGAACGCATCCCCCGTAAGTATCGCTAGA------T------G------------------------------AG--AGCAA-----------GTAAG--AGAACA-TTTCA--TC-TGACTACACT---------TATG--AC-AT---TGCAGACGAACACGTCCCACGCTTAAGCCATCTGGAACTATTGTCTCAAAGGCTC
droPer2 scaffold_8:3776811-3776975 - AATCAGGATCGGGACGTTGT------CGCTACAGCCAACCGAGGAACGCATCCCCCGTAAGTATCGCTAGA------T------G------------------------------AG--AGCAA-----------GTAAG--AGAACA-TTTCA--TC-TGACTACATT---------TATG--AC-AT---TGCAGACGAACACGTCCCACGCTTAAGCCATCTGGAACTATTGTCTCAAAGGCTC
droWil2 scf2_1100000004851:140662-140863 + ---CAGGATCGTGATGCAGTGCCCGTGTCTACACCGAATCGAGGAACACATCCACCGTAAGTTTTACAT------AATAT-----------G-TTTGT----TTACTTTTGTTGG--A-AACGACATTATTCCTCCTAAG--ATAAAA-TTTAA--AA-TGGAC----TTATTTGT--TTTG--AT-ATA--AATAGGAGAACACGTCCAACGCTAAGGCCATCTGGAACAATTGTATCTAAAGCTC
droVir3 scaffold_13246:180225-180382 + AATCAGGATCGTGATACTGC------TGCCACTCCTAACAGAGGGACTCATCCACCGTAAGTACCTTTA-----ATGC----------------------TT-------------A-AA-----------------TAAAATAAAC------ACTTTA-CAAAT----------GG--TGA---ACACC---CACAGACGGACGCGTCCAACGCTTAAGCCGGCTGGCACAATAGTCTCAAAGGCTC
droMoj3 scaffold_6500:220086-220243 + AATCAGGATCGCGATGTT---------GCCACTCCAAACAGGGGAACACATCCACCGTAAGTTACTCCC-----ATGC----------------------TA-------------T-G-----------------GAAAG--ACAATAGTATAA--TA-TGAAT----------GT--TATG--CA-ATC--GCCAGGCGCACACGTCCCACCCTTAAGCCAGCAGGAACAATTGTATCGAAGGCTC
droGri2 scaffold_15252:17063003-17063162 - AATCAAGATCGCGATACGGT------GACTACGCCCAACAGAGGCACACATCCGCCGTAAGTAACTTTTG----AT--------G------------A---------------GT--CA---TA-----------TTAGT--ACAT------AATTTA-A--G-T---------ACGATGTT--CCCTT---CTCAGGCGGACACGTCCAACGCTCAAACCATCTGGCACAATTGTATCGAAGGCCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AATCAGGATCGGGACTTGAT------ATCCACTCCCAACCGCGGAACTCATCCTCCGTAAGGAATCGT---CTAATATTT-----------T-GTTGC---------------GC--AA-----------------------------------TA-ACA----T---------AACGTAAA--ATTTT---TTAAGACGAACGCGGCCAACGCTTAAGCCATCGGGAATAATTGTATCAAAGGCTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..TCAGGATCGGGACTTGAT------ATCCAC.......................................................................................................................................................................................................................24170.0070002000000068000000
..TCAGGATCGGGACTTGAT------ATCCACTC.....................................................................................................................................................................................................................26128.0028002100000024100000
...........................TCCACTCCCAACCGCGGAACTCATCCTC................................................................................................................................................................................................28126.0026005130000008000000
.............................CACTCCCAACCGCGGAACTCATCCTC................................................................................................................................................................................................26121.0021003700000011000000
.ATCAGGATCGGGACTTGAT------ATCCAC.......................................................................................................................................................................................................................25120.0020000000000020000000
.....................................................TCCGTAAGGAATCGT---CTAATATTT-----------............................................................................................................................................................24120.0020000000000018200000
...................T------ATCCACTCCCAACCGCGGAACTCATC...................................................................................................................................................................................................27119.0019000100100008000000
...................T------ATCCACTCCCAACCGCGGAACTCA.....................................................................................................................................................................................................25117.0017000140000003000000
..TCAGGATCGGGACTTGAT------ATCCACTCC....................................................................................................................................................................................................................27117.0017001000000007000000
.ATCAGGATCGGGACTTG.....................................................................................................................................................................................................................................17117.0017000000000017000000
.............................................................................................................................................................ACA----T---------AACGTAAA--ATTTT---TTAAGACGAA.............................................27115.001500430000008000000
.ATCAGGATCGGGACTTGA....................................................................................................................................................................................................................................18114.0014000000000014000000
...........................TCCACTCCCAACCGCGGAACTCATCC..................................................................................................................................................................................................26113.001300090000004000000
AATCAGGATCGGGACTTGAT------ATCCAC.......................................................................................................................................................................................................................26112.0012000000000012000000
.............................................................................................................................................................ACA----T---------AACGTAAA--ATTTT---TTAAGACG...............................................25111.001100311000005100000
..........................................................................................................................................................................................................CGCGGCCAACGCTTAAGCCATCGGGA...................26110.001000040000006000000
.............................................................................................................................................................ACA----T---------AACGTAAA--ATTTT---TTAAGACGA..............................................26110.001000110100007000000
AATCAGGATCGGGACTTG.....................................................................................................................................................................................................................................1819.00900000000009000000
..........................................................................................................................................................................................................CGCGGCCAACGCTTAAGCCATCGGGAA..................2719.00900000000009000000
...........................TCCACTCCCAACCGCGGAACTCATC...................................................................................................................................................................................................2519.00900030000006000000
AATCAGGATCGGGACTTGA....................................................................................................................................................................................................................................1918.00800000000008000000
...............................................................................................TGC---------------GC--AA-----------------------------------TA-ACA----T---------AACGT....................................................................1818.00800000000008000000
.........................................................................................................................................................................................................ACGCGGCCAACGCTTAAGCCATCG......................2418.00800000000008000000
...CAGGATCGGGACTTG.....................................................................................................................................................................................................................................1517.00700000000007000000
..........................ATCCACTCCCAACCGCGGAACTCATCC..................................................................................................................................................................................................2716.00600010100004000000
..............................ACTCCCAACCGCGGAACTCATCCTC................................................................................................................................................................................................2515.00500010000004000000
AATCAGGATCGGGACTTGAT------ATC..........................................................................................................................................................................................................................2315.00500000000005000000
...CAGGATCGGGACTTGA....................................................................................................................................................................................................................................1615.00500000000005000000
.........................................................................................................................................................................................................ACGCGGCCAACGCTTAAGCCATCGG.....................2515.00500000000005000000
................................TCCCAACCGCGGAACTCATCCTC................................................................................................................................................................................................2315.00500000000005000000
....................................................CTCCGTAAGGAATCGT---CTAATATTT-----------............................................................................................................................................................2515.00500020000003000000
.ATCAGGATCGGGACTT......................................................................................................................................................................................................................................1614.00400000000004000000
.......................................................CGTAAGGAATCGT---CTAATATTT-----------T-GT........................................................................................................................................................2514.00400300000001000000
.....................................................................................................................................................................................................................................TAATTGTATCAAAGGCTC1814.00400000000004000000
...............................................................................................TGC---------------GC--AA-----------------------------------TA-ACA----T---------AACG.....................................................................1714.00400000000004000000
..........................................................................................................................................................................................................................GCCATCGGGAATAATTGTATCAAAGGC..2713.00300010000002000000
.....................................................TCCGTAAGGAATCGT---CTAATATTT-----------T-G.........................................................................................................................................................2613.00300010000002000000
...................T------ATCCACTCCCAACCGCGGA..........................................................................................................................................................................................................2013.00300000000003000000
...........................TCCACTCCCAACCGCGGA..........................................................................................................................................................................................................1813.00300000000003000000
........................................................................................................................................................................................................................................TTGTATCAAAGGCTC1513.00300000000003000000
...................T------ATCCACTCCCAACCGCGGAACTCATCC..................................................................................................................................................................................................2813.00300020000001000000
.......................................................CGTAAGGAATCGT---CTAATATTT-----------T-GTTGC---------------......................................................................................................................................2813.00300200000001000000
.........................................................................................................................................................................................................ACGCGGCCAACGCTTAAGCCATCGGG....................2613.00300020000001000000
..........................................................................................................................................................................................................CGCGGCCAACGCTTAAGCCATCGG.....................2413.00300010000002000000
.........................................................................................................................................................................................................ACGCGGCCAACGCTTAAGCCATCGGGA...................2713.00300000000003000000
.........................................................TAAGGAATCGT---CTAATATTT-----------T-GTTGC---------------GC--..................................................................................................................................2813.00300200000001000000
..........................ATCCACTCCCAACCGCGGAACTCATC...................................................................................................................................................................................................2613.00300010000002000000
.........................................................TAAGGAATCGT---CTAATATTT-----------T-GTTGC---------------......................................................................................................................................2613.00300200000001000000
.....................................................................................................................................................................................................................................TAATTGTATCAAAGGCT.1713.00300000000003000000
..........................................................................................................................................................................................................CGCGGCCAACGCTTAAGCCATCGGGAAA.................2813.00300000000003000000
..........................................................................................................................................................................................................CGCGGCCAACGCTTAAGCCATCGGG....................2513.00300020000001000000
.........................................................................................................................................................................................................ACGCGGCCAACGCTTAAGCCATCGGGAA..................2813.00300020000001000000
...................T------ATCCACTCCCAACCGCGGAACTCAT....................................................................................................................................................................................................2613.00300000000003000000
...........................................................................................................................................................................................................................CCATCGGGAATAATTGTATCAAAGGC..2612.00200010000001000000
.............................CACTCCCAACCGCGGAACTCATCC..................................................................................................................................................................................................2412.00200010000001000000
.............................CACTCCCAACCGCGGAACTC......................................................................................................................................................................................................2012.00200000000002000000
...........................TCCACTCCCAACCGCGGAACTCATCCT.................................................................................................................................................................................................2712.00200200000000000000
.............................................................................................................................................................ACA----T---------AACGTAAA--ATTTT---TTAAGACGAAC............................................2812.00200010000001000000
.......................................................................................................................................................................................................................TAAGCCATCGGGAATAATTGTATCAAA.....2712.00200000001001000000
.................................................................................................................................................................................................TAAGACGAACGCGGCCAACGCT................................2212.00200000000002000000
..........................ATCCACTCCCAACCGCGGAACTCAT....................................................................................................................................................................................................2512.00200000000002000000
...............................................................................................TGC---------------GC--AA-----------------------------------TA-ACA----T---------AACGTA...................................................................1912.00200000000002000000
...........................................................................................................................................................................................................GCGGCCAACGCTTAAGCCATCGGGA...................2512.00200010000001000000
..............................................................................................................................................................................................................GCCAACGCTTAAGCCATCGGGAATAAT..............2712.00200000000002000000
.....GGATCGGGACTTGAT------ATCCAC.......................................................................................................................................................................................................................2112.00200000000002000000
...........................................................................................................................................................................................TT---TTAAGACGAACGCGGCCAACGC.................................2412.00200000000002000000
.............................................................................................................................................................ACA----T---------AACGTAAA--ATTTT---TTA....................................................2012.00200002000000000000
..................................................................................................................................................................................TAAA--ATTTT---TTAAGACG...............................................1712.00200000000002000000
......................................................................................................................................................................................................................TTAAGCCATCGGGAATAATT.............2012.00200000000002000000
.ATCAGGATCGGGACT.......................................................................................................................................................................................................................................1522.00400000000004000000
.......................................................CGTAAGGAATCGT---CTAATA..........................................................................................................................................................................1912.00200000000002000000
............................................................................................................................................................................................T---TTAAGACGAACGCGGCCAACGCT................................2412.00200000000002000000
.....................................................TCCGTAAGGAATCGT---CTAATAT.........................................................................................................................................................................2212.00200000000002000000
.....................................................TCCGTAAGGAATCGT---C...............................................................................................................................................................................1612.00200000000002000000
.....................................................................................................................................................................................................................CTTAAGCCATCGGGAA..................1612.00200000000002000000
...............................................................ATCGT---CTAATATTT-----------T-GTTGC---------------......................................................................................................................................2012.00200000000002000000
..TCAGGATCGGGACTTGAT------A............................................................................................................................................................................................................................1912.00200000000002000000
AATCAGGATCGGGACTTGAT------ATCC.........................................................................................................................................................................................................................2412.00200100000001000000
................................................CATCCTCCGTAAGGAATCGT---CTAATA..........................................................................................................................................................................2612.00200000000002000000
...CAGGATCGGGACTTGAT------ATCCACTC.....................................................................................................................................................................................................................2512.00200100000001000000
...................T------ATCCACTCCCAACCGCGGAACTC......................................................................................................................................................................................................2412.00200020000000000000
......................................................................................................................................................................................................................TTAAGCCATCGGGAATAATTGTATC........2512.00200000000002000000
.................................................................................................................................................................................................TAAGACGAACGCGGCCAACGCTTAAGC...........................2712.00200000000002000000
...................T------ATCCACTCCCAACCGCGGAACTCATCCT.................................................................................................................................................................................................2912.00200020000000000000
..................................................................GT---CTAATATTT-----------T-GTTG......................................................................................................................................................1612.00200000000002000000
..................................................TCCTCCGTAAGGAATCGT---CTAATATTT-----------............................................................................................................................................................2712.00200000000002000000
AATCAGGATCGGGACT.......................................................................................................................................................................................................................................1612.00200000000002000000
..........................................................................................................................................................................................................CGCGGCCAACGCTTAAGCCATC.......................2211.00100000000001000000
................................................................................................................................................................................................TTAAGACGAACGCGGCCAACGCTTA..............................2511.00100000000001000000
...............................................................................................TGC---------------GC--AA-----------------------------------TA-ACA----T---------AACGTAAA--ATT............................................................2411.00100001000000000000
............................CCACTCCCAACCGCGGAACTCATCCTC................................................................................................................................................................................................2711.00100010000000000000
.ATCAGGATCGGGACTTGAT------ATCCGA.......................................................................................................................................................................................................................2511.00100000000001000000
.......................................CGCGGAACTCATCCTCC...............................................................................................................................................................................................1711.00100000000001000000
.................................CCCAACCGCGGAACTCATCCTC................................................................................................................................................................................................2211.00100010000000000000
.ATCAGGATCGGGACTTGAT------.............................................................................................................................................................................................................................1911.00100000000001000000
.....................................................TCCGTAAGGAATCGT---CTAATATTT-----------T-A.........................................................................................................................................................2611.00100010000000000000
.................................................................................................................................................................................................................AACGCTTAAGCCATCGGGAATAAT..............2411.00100000000001000000
.............................CACTCCCAACCGCGGAACTCATC...................................................................................................................................................................................................2311.00100000000001000000
...................T------ATCCACTCCCAACCGCGGAACTCATGG..................................................................................................................................................................................................2811.00100000000001000000
.......................................................................................................................................................................................................................TAAGCCATCGGGAATAATTGTATC........2411.00100000000001000000
.................................................................................................................................................................................GTAAA--ATTTT---TTAAGACGAA.............................................2011.00100000000001000000
.........CGGGACTTGAT------ATCCACTCCCAACCGC.............................................................................................................................................................................................................2711.00100010000000000000
.............................................................................................................................................................................................................GGCCAACGCTTAAGCCATCGGGAATAAT..............2811.00100000000001000000
AATCAGGATCGGGACTTGAT------ATCCA........................................................................................................................................................................................................................2511.00100000000001000000
.........................................................................................................................................................................................................................AGCCATCGGGAATAATTGTATCAA......2411.00100000000001000000
..................................................TCCTCCGTAAGGAATCGT---C...............................................................................................................................................................................1911.00100000000001000000
.....................................................................................................................................................................................................ACGAACGCGGCCAACGC.................................1711.00100000000001000000
................TGAT------ATCCACTCCCAACCGCGGAACT.......................................................................................................................................................................................................2611.00100010000000000000
...............................................................ATCGT---CTAATATTT-----------T-GTTGC---------------GC--AA-----------------------------------TA-..........................................................................................2611.00100000000001000000
...................T------ATCCACTCCCAACCGCGGAACTCATCT..................................................................................................................................................................................................2811.00100000000001000000
..TCAGGATCGGGACTTGAT------ATCCACTCCC...................................................................................................................................................................................................................2811.00100100000000000000
......................................................................................................................................................................................................CGAACGCGGCCAACGCTTA..............................1911.00100000000001000000
..................................................................................................................................................................................................................ACGCTTAAGCCATCGGGAATAATTG............2511.00100000000001000000
.........................................................................................................................................................................................................ACGCGGCCAACGCTTAAGCCATCGT.....................2511.00100000000001000000
.......ATCGGGACTTGAT------ATCCACTC.....................................................................................................................................................................................................................2111.00100000000001000000
..TCAGGATCGGGACTTGAT------ATCC.........................................................................................................................................................................................................................2211.00100100000000000000
.............................CACTCCCAACCGCGGA..........................................................................................................................................................................................................1611.00100000000001000000
.............................................................................................................................................................................................................GGCCAACGCTTAAGCCATCGGGA...................2311.00100000000001000000
........................................................................................................................................................................................ATTTT---TTAAGACGAACGCGGC.......................................2111.00100010000000000000
........................................GCGGAACTCATCCTCCGTAAGGAATC.....................................................................................................................................................................................2611.00100010000000000000
...............................................................ATCGT---CTAATATTT-----------T-G.........................................................................................................................................................1611.00100000000001000000
...............TTGAT------ATCCACTCCCAACCGCGGAACTCA.....................................................................................................................................................................................................2911.00100010000000000000
...CAGGATCGGGACTTGAT------ATCCACTCC....................................................................................................................................................................................................................2611.00100100000000000000
............................................................................................................................................................................................................................CATCGGGAATAATTGTATCAAAGGC..2511.00100000000001000000
...........................................................................................................................................................................................TT---TTAAGACGAACGCGGCCAACGCT................................2511.00100010000000000000
.................................CCCAACCGCGGAACTCA.....................................................................................................................................................................................................1711.00100000000001000000
...................................................................................................................................................................................AAA--ATTTT---TTAAGACGA..............................................1711.00100000000001000000
...................T------ATCCACTCCCAACCGCG............................................................................................................................................................................................................1811.00100000000001000000
.........................................................................................................................................................................................................................AGCCATCGGGAATAATTGTATCAAAGGC..2811.00100000000001000000
.................................................................................................................................................................................................TAAGACGAACGCGGCCAACGC.................................2111.00100000000001000000
......................................CCGCGGAACTCATCCT.................................................................................................................................................................................................1611.00100000000001000000
..........................................................................................................................................................................................................CGCGGCCAACGCTTAAGCC..........................1911.00100000000001000000
..........................................................................ATATTT-----------T-GTTGC---------------GC--AA-----------------------------------TA-..........................................................................................1811.00100000000001000000
.............................CACTCCCAACCGCGGAACTCATCCTA................................................................................................................................................................................................2611.00100010000000000000
........................................................................................................................................................................................ATTTT---TTAAGACGAACGCGGCCAACGC.................................2711.00100000000001000000
.................................................................................................................................................................................GTAAA--ATTTT---TTAAGACGA..............................................1911.00100000000001000000
....................................AACCGCGGAACTCATC...................................................................................................................................................................................................1611.00100000000001000000
....................................................................................................................................................................T---------AACGTAAA--ATTTT---TTAAGACGAA.............................................2411.00100000000001000000
..............................ACTCCCAACCGCGGAACTCATCC..................................................................................................................................................................................................2311.00100000000001000000
.................................CCCAACCGCGGAACTCATCC..................................................................................................................................................................................................2011.00100000000001000000
...........................TCCACTCCCAACCGCGGAACTCAT....................................................................................................................................................................................................2411.00100000000001000000
.............................CACTCCCAACCGCGGAACTCATCCT.................................................................................................................................................................................................2511.00100100000000000000
.ATCAGGATCGGGACTTGAT------ATCCACT......................................................................................................................................................................................................................2611.00100000000001000000
..TCAGGATCGGGACTT......................................................................................................................................................................................................................................1511.00100000000001000000
.........................................................................................................................................................................................................ACGCGGCCAACGCTT...............................1511.00100000000001000000
.......................................................CGTAAGGAATCGT---CTAATATTT-----------T-GTT.......................................................................................................................................................2611.00100100000000000000
...................T------ATCCACTCCCAACCGC.............................................................................................................................................................................................................1711.00100000000001000000
.....................................................TCCGTAAGGAATCGT---CTAATATTT-----------T-GT........................................................................................................................................................2711.00100010000000000000
................................TCCCAACCGCGGAACTCATCCTCCG..............................................................................................................................................................................................2511.00100010000000000000
..........................................................................................................................................................................................TTT---TTAAGACGAACGCGGCCAACGC.................................2511.00100010000000000000
...........................TCCACTCCCAACCGCGGAACTC......................................................................................................................................................................................................2211.00100000000001000000
....................................................CTCCGTAAGGAATCGT---CTAATATTT-----------A-..........................................................................................................................................................2611.00100100000000000000
........................................................................................................................................................................................ATTTT---TTAAGACGAA.............................................1511.00100000000001000000
....................................................................................................................................................................T---------AACGTAAA--ATTTT---TTAAGACGAACGC..........................................2711.00100000000001000000
..................................................TCCTCCGTAAGGAATCGT---CTAATA..........................................................................................................................................................................2411.00100000000001000000
.....................................................TCCGTAAGGAATCGT---CTAATA..........................................................................................................................................................................2111.00100000000001000000
...........................................................AGGAATCGT---CTAATATT........................................................................................................................................................................1711.00100000000001000000
.........................................................TAAGGAATCGT---CTAATATTT-----------T-GTTG......................................................................................................................................................2511.00100000000001000000
....................................................................................................................................................................................AA--ATTTT---TTAAGACGA..............................................1611.00100000000001000000
................................................................TCGT---CTAATATTT-----------T-GTTGC---------------GC--..................................................................................................................................2111.00100000000001000000
..........................................................................................................................................................................................TTT---TTAAGACGAACGCGGCCAACGCC................................2611.00100100000000000000
...............................................TCATCCTCCGTAAGGAATCGT---C...............................................................................................................................................................................2211.00100000000001000000
..................................................................GT---CTAATATTT-----------T-GTTGC---------------GC--A.................................................................................................................................2011.00100000000001000000
.....................................................................................................................................................................................................................CTTAAGCCATCGGGAATA................1811.00100000000001000000
.......................................................CGTAAGGAATCGT---CTAATATTT-----------............................................................................................................................................................2211.00100000000001000000
.......................................................CGTAAGGAATCGT---CTAATATTT-----------T-GTTG......................................................................................................................................................2711.00100000000001000000
...CAGGATCGGGACTTGAT------A............................................................................................................................................................................................................................1811.00100000000001000000
..................................................................................................................................................................................................AAGACGAACGCGGCCAACGCT................................2111.00100000000001000000
.................................CCCAACCGCGGAACTCATC...................................................................................................................................................................................................1911.00100010000000000000
................................................................................................................................................................................................................CAACGCTTAAGCCATCGGGA...................2011.00100000000001000000
.....................................................................................................................................................................................................................................TAATTGTATCAAAGGC..1611.00100000000001000000
....................................................................................................................................................................................................................................ATAATTGTATCAAAGGCTC1911.00100000000001000000
...................................................CCTCCGTAAGGAATCGT---CTAATATTT-----------............................................................................................................................................................2611.00100000000001000000
.........................................................................................................................................................................................................ACGCGGCCAACGCTTAAGCCATCGGT....................2611.00100000000001000000
.............................CACTCCCAACCGCGGAACTCATCCTCCG..............................................................................................................................................................................................2811.00100010000000000000
.................................................ATCCTCCGTAAGGAATCGT---CTAATA..........................................................................................................................................................................2511.00100000000001000000
.ATCAGGATCGGGACTTGAT------ATCCACTCC....................................................................................................................................................................................................................2811.00100000000001000000
..................................................................................................................................................................................TAAA--ATTTT---TTAAGACGAA.............................................1911.00100000000001000000
..................................................................................................................................................................................TAAA--ATTTT---TTAAGACGAACGCGGC.......................................2511.00100000000001000000
............................................................................................................................................................................................T---TTAAGACGAACGCGGCCAACGCTTA..............................2611.00100000000001000000
..TCAGGATCGGGACTTGAT------ATCCACTCA....................................................................................................................................................................................................................2711.00100000000001000000
..........................................................................................................................................................TA-ACA----T---------AACGTAAA--ATTTT---TTAAGA.................................................2511.00100010000000000000
.................................................................................................................................................................................................................................GGAATAATTGTATCAAAGGCT.2111.00100000000001000000
..TCAGGATCGGGACTTGA....................................................................................................................................................................................................................................1711.00100000000001000000
.......ATCGGGACTTGAT------ATCCACTCCCAACCGC.............................................................................................................................................................................................................2911.00100010000000000000
.ATCAGGATCGGGACTTGG....................................................................................................................................................................................................................................1820.50100000000001000000
......................................................................................................................................................................................................CGAACGCGGCCAACGA.................................1620.50100000000010000000
...CAGGATCGGGACTTGAC------.............................................................................................................................................................................................................................1720.50100000000001000000
droSec2
AATCAGGATCGAGACTTGAT------ATCCACTCCCAACCGCGGAACTCATCCTCCGTAAGGAATCGT---CTAATATTT-----------T-GTTGC---------------GC--AA-----------------------------------TA-AGA----T---------AACGTAAA--ATTTT---TTAAGACGAACGCGGCCAACGCTTAAGCCATCGGGAATAATTGTATCAAAGGCTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
AATCAGGATCGAGACGTGAT------ATCCACGCCCAACCGCGGAACTCATCCTCCGTAAGGAATCGT---CTAATATTT-----------T-GTTGC---------------GC--AG-----------------------------------TA-AGA----T---------AACGTAAA--ATTTT---TTAAGACGAACGCGGCCAACACTTAAGCCATCGGGAACAATTGTATCAAAGGCTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................TAAGGAATCGT---CTAATATTT-----------T-GTTGC---------------......................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATTT-----------T-GTTGC---------------GC--AG-----------------------------------TA-AGA----T---------AACGTAA..................................................................2812.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AGCCATCGGGAACAATTGTATCAA......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TAAGACGAACGCGGCCAACACTTAAG............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CAACCGCGGAACTCATCCAGA...............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.ATCAGGATCGAGACGTGA....................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................AGACGAACGCGGCCAACACT................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTT-----------T-GTTGC---------------GC--AG-----------------------------------TA-AGA----T---------AA.......................................................................2111.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AATCAGGATAGAGACTTGCT------CTCCACGCCCAACCGCGGAACTCACCCACCGTAAGGAATCAT---TTAATATTT-----------T-GCTCC---------------GC--AG-----------------------------------TA-TAA----T---------TTCGTAAA--ACTTT---TTTAGACGAACGCGCCCCACGCTCAAGCCATCGGGCACAATTGTATCAAAGGCTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................AAA--ACTTT---TTTAGACGAACGCGCCCCAC...................................2811.0010100000
droYak3
AATCAGGATAGAGACTTGCA------ATCCACGCCCAACCGCGGAACTCACCCACCGTAAGCAATCAT---TTAATATTT-----------T-TTTGC---------------TC--AG-----------------------------------TA-AGA----T---------AGCTTAAA--ACTTT---TTAAGACGAACACGCCCCACGCTTAAGCCATCGGGGACAATTGTATCAAAGGCTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
AATCAGGATCGAGATGTGG---------------CGAACCGTGGAACTCACCCTCCGTAAGTATTTATT--TTACTATAT-----------G-GCGTC---------------AC--GA-----------------------------------TT-ATA----T---------GCAATATC--ATTTC---TTAAGACGAACACGTCCTACACTAAAACCTTCGGGCACCATCGTTTCAAAGGCACSizeHit CountTotal NormTotal
No Reads
droBia1
AATCAGGATCGGGACGTACT------CTCTACGCCAAATCGTGGAACTCACCCACCGTAAGCATATATAAATTAATATAT---AC--TA--A-GTTCC---------------TT--TG-----------------------------------TG-ACT----T---------GAAATCTT--ATTTG---CGAAGACGAACACGACCCACACTCAAGCCATCGGGCACGATCGTATCAAAGGCGCSizeHit CountTotal NormTotal
No Reads
droTak1
AATCAGGATAGAGATGTACT------CTCAACGCCGAACCGTGGAACTCACCCACCGTAAGAATACAAT--TTAATACAT-----------A-GTGAA---------------GC--AG-----------------------------------TT-AAA----T---------CAAATGTA--AT-TT---TTAAGACGAACACGTCCCACACTGAAACCATCCGGCACCATTGTGTCAAAGGCCCSizeHit CountTotal NormTotal
No Reads
droEle1
AATCAGGATAGAGACGTACT------TTCTACGCCGAACCGCGGAACTCACCCACCGTAAGCAAATA-----TAATATTT---TCATTAATG-ATGAC---------------CC--AG-----------------------------------TA-AAA----G-------------TAAATCTTTTT---TTTAGACGGACACGCCCGACACTGAAGCCATCGGGAACCATTGTGTCAAAAGCGCSizeHit CountTotal NormTotal
No Reads
droRho1
AATCAGGATCGAGATGTACT------CTCTACGCCGAACCGCGGAACTCACCCACCGTAAGCATAAATG--TTGATATTC-----------A-AAGCC---------------CC--AG-----------------------------------CT-AAA----G---------TAAATTAA--ATTTT---CTAAGACGAACACGCCCCACACTGAAGCCATCGGGCACCATTGTATCGAAGGCACSizeHit CountTotal NormTotal
No Reads
droFic1
AACCAAGACCGAGACGTCCC------ATCTACGCCAAACCGCGGAACCCACCCACCGTAAGCAAGTATT--TAAAAATAT-----------T-GTGAC---------------AT--AG-----------------------------------TA-AAA--A-T---------GAAATATT--TTTAT---TTAAGCCGAACTCGTCCCACACTGAAGCCGTCGGGCACCATTGTGTCAAAGGCCCSizeHit CountTotal NormTotal
No Reads
droKik1
AACCAGGATCGGGACGTGGT------CGCCACACCGAACCGCGGAACGCACCCACCGTAAGCCCTAGG----------TTTCTTGAGTAACACATGCCGCT------------GG--AA-----------------------------------TT-AAA----T---------GAATTCT----TCTC---TTCAGACGAACCAGGCCCACACTAAAGCCGTCGGGAACCATCGTGTCGAAGGCCCSizeHit CountTotal NormTotal
No Reads
droAna3
AACCAGGACCGGGATGTCGT------CTCGACCCCGAACCGTGGCACTCATCCGCCGTAAGTATTCCGATC------A------G------------------------------TG--GCTTA-----------GTATG--AGT---------------GTCCTCACT---------TATG--GC-TCCGATATAGACGCACCCGCCCCACGCTGAAGCCCTCTGGAACCATCGTCTCGAAGGCCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AACCAGGACCGGGATGTCGT------CTCGACCCCGAACCGTGGCACTCATCCGCCGTGAGTATTCCG------ATCTGT-----------G-GTTGA---------------G----------------------TATG--TGAA-----------TCC----T---------AACTGAAG--CC-TTCCATGTAGACGCACCCGGCCCACGTTGAAGCCCTCTGGAACCATCGTCTCAAAGGCCCSizeHit CountTotal NormTotal
No Reads
dp5
AATCAGGATCGGGACGTTGT------CGCTACAGCCAACCGAGGAACGCATCCCCCGTAAGTATCGCTAGA------T------G------------------------------AG--AGCAA-----------GTAAG--AGAACA-TTTCA--TC-TGACTACACT---------TATG--AC-AT---TGCAGACGAACACGTCCCACGCTTAAGCCATCTGGAACTATTGTCTCAAAGGCTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AATCAGGATCGGGACGTTGT------CGCTACAGCCAACCGAGGAACGCATCCCCCGTAAGTATCGCTAGA------T------G------------------------------AG--AGCAA-----------GTAAG--AGAACA-TTTCA--TC-TGACTACATT---------TATG--AC-AT---TGCAGACGAACACGTCCCACGCTTAAGCCATCTGGAACTATTGTCTCAAAGGCTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................CATCTGGAACTATTGTCTC........1911.001100000
droWil2
---CAGGATCGTGATGCAGTGCCCGTGTCTACACCGAATCGAGGAACACATCCACCGTAAGTTTTACAT------AATAT-----------G-TTTGT----TTACTTTTGTTGG--A-AACGACATTATTCCTCCTAAG--ATAAAA-TTTAA--AA-TGGAC----TTATTTGT--TTTG--AT-ATA--AATAGGAGAACACGTCCAACGCTAAGGCCATCTGGAACAATTGTATCTAAAGCTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AATCAGGATCGTGATACTGC------TGCCACTCCTAACAGAGGGACTCATCCACCGTAAGTACCTTTA-----ATGC----------------------TT-------------A-AA-----------------TAAAATAAAC------ACTTTA-CAAAT----------GG--TGA---ACACC---CACAGACGGACGCGTCCAACGCTTAAGCCGGCTGGCACAATAGTCTCAAAGGCTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................TTAAGCCGGCTGGCACAATAGTCTC........2511.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
AATCAGGATCGCGATGTT---------GCCACTCCAAACAGGGGAACACATCCACCGTAAGTTACTCCC-----ATGC----------------------TA-------------T-G-----------------GAAAG--ACAATAGTATAA--TA-TGAAT----------GT--TATG--CA-ATC--GCCAGGCGCACACGTCCCACCCTTAAGCCAGCAGGAACAATTGTATCGAAGGCTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AATCAAGATCGCGATACGGT------GACTACGCCCAACAGAGGCACACATCCGCCGTAAGTAACTTTTG----AT--------G------------A---------------GT--CA---TA-----------TTAGT--ACAT------AATTTA-A--G-T---------ACGATGTT--CCCTT---CTCAGGCGGACACGTCCAACGCTCAAACCATCTGGCACAATTGTATCGAAGGCCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................GCACAATTGTATCGAAGGCC.2011.00101

Generated: 05/18/2015 at 12:21 PM