ID:

dsi_18877

 Coordinate:

3r:10177598-10177694 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.0 -15.8 -15.6 -15.6

Flybase annnotation

five_prime_UTR [3r_10177492_10177818_-]; exon [3r_10177470_10177818_-]

No Repeatable elements found

Sense Strand Reads

#####################################################################################################################################################################################################
AAGGAAATTAGCCAATTCCTATTTTGCGCTGACGTTACGCCGTTTAAAGTGTAAGTTCCCGGCCAGGATTTGACTCAATCCCTGCCACAACGACTTTCGGTCAAGTGTTCGTTGCGAGAGCTTTAACTACGTAGCGAACTTTCGTAGTTTTTCTGCACACGTTTTGCCGCTTCGGCTTTTGTTTTGGCGCCCGATTT
**********************************************************************............................(((.......((((((((..((......)).)))))))))))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
........................................................................................................................................................................GCTTCGGCTTTTGTTTTGGC......... 20 0 1 3.00 3 0 0 3 0 0 0 0
................................................................................................................TGCGAGAGCTTTAACTACGTAGCGAACT......................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0
............................................TAAAGTGTAAGTTCCCGGCCAGGATT............................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0
...........................................................................................................................................TTTCGTAGTTTTTCTGCACACGTTTTGC.............................. 28 0 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................................................................................TCTGCACACGTTTTGCCGCTTCGGC..................... 25 0 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................CGCTTCGGCTTTTGTTTTGG.......... 20 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................TTCGGTCAAGTGTTCGTTGCGAGAGCTT.......................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0
...............TTCCTATTTTGCGCTGACGTTACGC............................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................TTCGTTGCGAGAGCTTTAACTACGT................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................TGACTCAATCCCTGCCACAACGACTT..................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0
......................................................................................................AAGTGTTCGTTGCGAGAGCTTTAAC...................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................ACGACTTTCGGTCAAG............................................................................................ 16 0 1 1.00 1 0 0 0 1 0 0 0
...........................................TTAAAGTGTAAGTTCCCGGCCAGGATT............................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
................TCCTATTTTGCGCTGACGTTACGCCGTT......................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................TTTGCCGCTTCGGCTT................... 16 0 2 0.50 1 0 0 0 0 0 0 1
.....................................................................................CACAACGACTCTCGG................................................................................................. 15 1 4 0.25 1 0 0 0 1 0 0 0
..............................................................................................................GTTGGGAGAGCTTTA........................................................................ 15 1 20 0.15 3 0 0 0 0 0 0 3
..........................CGCGGACGCTACGCCG........................................................................................................................................................... 16 2 12 0.08 1 0 1 0 0 0 0 0
............................................................................................................................................TTCGTTGTGGTTCTGCACACG.................................... 21 3 13 0.08 1 0 0 0 0 0 0 1
......................................................................TGACACAATCCCTGT................................................................................................................ 15 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

TTCCTTTAATCGGTTAAGGATAAAACGCGACTGCAATGCGGCAAATTTCACATTCAAGGGCCGGTCCTAAACTGAGTTAGGGACGGTGTTGCTGAAAGCCAGTTCACAAGCAACGCTCTCGAAATTGATGCATCGCTTGAAAGCATCAAAAAGACGTGTGCAAAACGGCGAAGCCGAAAACAAAACCGCGGGCTAAA
*********************************************************............................(((.......((((((((..((......)).)))))))))))********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
......................................................................................................................TCGAAATTGATGCATCGCT............................................................ 19 0 1 3.00 3 3 0 0
...............................................................................................................................ATGGATCGCATGGAAGCAT................................................... 19 3 4 0.25 1 0 1 0
.....................................................TCACGCGCCGGACCTAAACT............................................................................................................................ 20 3 6 0.17 1 0 1 0
.......................................................ATGGGCCGATCCTAA............................................................................................................................... 15 2 20 0.15 3 0 3 0
................................................................................................................................TGGATCGCATGGAAGCAT................................................... 18 3 12 0.08 1 0 1 0
....................................................................................GGTGATGCGGAAAGCC................................................................................................. 16 2 20 0.05 1 0 1 0
..........................................................................CGTTAGGGATGGTGTTG.......................................................................................................... 17 2 20 0.05 1 0 0 1

Generated: 04/24/2015 at 10:36 AM