ID:

dsi_18876

 Coordinate:

3r:13890860-13891105 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-46.9 -46.6 -46.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Gypsy8-I_Dpse-intLTRGypsy-
mature
star
  1. 2l:3024094-3024108 -
  2. 2r:3587190-3587204 +
  3. 2r:9739865-9739879 -
  4. 2r:10078750-10078764 -
  5. 2r:12617415-12617429 +
  6. 3l:12212343-12212357 +
  7. 3l:13690944-13690958 -
  8. 3l:15114991-15115005 +
  9. 3l:20615250-20615264 +
  10. 3r:4536811-4536825 +
  11. dsi_30560  3r:11501049-11501063 -
  12. 3r:13091376-13091390 -
  13. dsi_18876  3r:13890873-13890887 -
  14. 3r:15731363-15731377 +
  15. 3r:17564357-17564371 -
  16. x:9177907-9177921 +
  17. x:15350321-15350335 +

Sense Strand Reads

CAGCAAGCAGGCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGCTGGCTTCGCAGATCCTCGACCGGAAGTCACCGCGCACCAAGGTGGCGGACAGGCCCCAGAACGGACCCACGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCGCGAGCGGTTCGAGTGCGCAGCAGCAACAACAACAGAATGCCCAGCAGCAGCATCAGGGCTCGCAGCAGCAGCAGCAACAGAATGTGGTGCAGCAGCAAAATGTGGCGCAGCAGCAGCACATGCAGCAGCAACAGCAGCAGTCGCAC
******************************************************************.....(((......))).....((((.(((....)))))))...(((((.....((((((..(((..((..........((((......(((..(((....)))..))).......)))).........))..)))...)))))).((((((.((.(((............)))...)).)).))))..))))).((.((....)).))........*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
..................................................................GCAGATCCTCGACCGGAAGTCACC................................................................................................................................................................................................................................................................ 24 0 1 3.00 3 3 0 0 0 0 0 0 0
..............................TGCCGAGCAGCTGAACAAGGAC...................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................GATCCTCGACCGGAAGTCACCGC.............................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................CCGGACAAGGACCTGCTGCTG............................................................................................................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0
..............................TGCCGAGCAGCTGAACAAGGACCTGCTGC............................................................................................................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................GCGAAGGGTTCGAGTGCG................................................................................................................................. 18 2 8 0.25 2 0 0 0 0 2 0 0 0
...................................................................................................................................................................................................................................................................TCGGAACAGCAGCAGCAACAGAG................................................................ 23 3 15 0.20 3 0 0 0 0 0 3 0 0
.................................................................................................................................................................................................................................................................TCTCGGAACAGCAGCAGCAACAGAA................................................................ 25 3 6 0.17 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................CGAAGGGTTCGAGTGCG................................................................................................................................. 17 2 18 0.11 2 0 0 0 0 1 0 0 1
................................................................................................................................................................................................................................................................................................................................TGCAGCAGCAACAGCAGCGGT..... 21 1 9 0.11 1 0 1 0 0 0 0 0 0
.................................................................................GAAGTCGCCTCGCACCA........................................................................................................................................................................................................................................................ 17 2 11 0.09 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................................................CAGCAGCAACAGAAT............................................................... 15 0 17 0.06 1 0 0 1 0 0 0 0 0
........................................CTGAAGAAGGCTCTGCTGCT.............................................................................................................................................................................................................................................................................................. 20 3 19 0.05 1 0 0 0 0 1 0 0 0
.............GACTCCGTGACCGCCC............................................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

GTCGTTCGTCCGCCTGAGGCACTGGCGCCGACGGCTCGTCGACTTGTTCCTGGACGACGACCGAAGCGTCTAGGAGCTGGCCTTCAGTGGCGCGTGGTTCCACCGCCTGTCCGGGGTCTTGCCTGGGTGCGGGCGTTGTGTTAGTCCATTATTACCAAGTGATGAGGATCGATTATCAGTTTACGGGAGGGTTTGCGGGCGCTCGCCAAGCTCACGCGTCGTCGTTGTTGTTGTCTTACGGGTCGTCGTCGTAGTCCCGAGCGTCGTCGTCGTCGTTGTCTTACACCACGTCGTCGTTTTACACCGCGTCGTCGTCGTGTACGTCGTCGTTGTCGTCGTCAGCGTG
***************************************************************.....(((......))).....((((.(((....)))))))...(((((.....((((((..(((..((..........((((......(((..(((....)))..))).......)))).........))..)))...)))))).((((((.((.(((............)))...)).)).))))..))))).((.((....)).))........****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
...................................................................................................................................................................................................................................TTGTTGTCTTACGGGTCGTC................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................................GTCTTGCCAGGGTGC........................................................................................................................................................................................................................ 15 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................................................................ATGAGGAGCGATTAT.......................................................................................................................................................................... 15 1 3 0.33 1 0 0 1 0 0 0
.........................CGCCAACGCCTCGTAGACTTG............................................................................................................................................................................................................................................................................................................ 21 3 5 0.20 1 0 0 1 0 0 0
...........................................................................................................................TGGGTGCGGGAGTTG................................................................................................................................................................................................................ 15 1 17 0.18 3 0 0 0 3 0 0
.....................ATGGCGCCGACGGCT...................................................................................................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 1 0 0 0 0
...........................................................................................................................TGGGTGCGGGCCTTGTGG............................................................................................................................................................................................................. 18 2 6 0.17 1 0 0 0 0 1 0
...............................................................................................................CGGGGTCTTGCGTGCGT.......................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 1 0 0
................................................................................................................................................................................................................................................................................................................................ACGTCATCGTTGTCGTCGT....... 19 1 20 0.10 2 0 2 0 0 0 0
...........GCATGAGGCGATGGCGCCG............................................................................................................................................................................................................................................................................................................................ 19 3 12 0.08 1 0 0 0 1 0 0
....................AATGGCGCCGACGGC....................................................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................TCGTCTTCGTCGTTGTCTT................................................................ 19 1 20 0.05 1 0 0 0 0 0 1
.....................................................................................................................................................................................................................................GTTGCTTTACGGCTCGTCGT................................................................................................. 20 3 20 0.05 1 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................CGTCGTCTTCGTCGTTGTCTT................................................................ 21 1 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:13890810-13891155 - dsi_18876 CAGCAAGCAG--GCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGCTGGCTTCGCAGATCCTCGACCGGAAGTCACCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CGAGCGG---TTC------------------------------GAGTGCGCAG-------------------------------------------------------CAGCA------------------------ACAACAACAGAA------------------------------------TGCCCAGCAGCAGCA---TCAGGGC---TCGCAG------------------------CA---------------------------------------------GCA------------------GCAGCA----------------------ACAGAATGTGGTGCAGCAGCAAAATGTGGCGCA---GCAGCAGCA------C---------------ATGC------AG------CAGCAAC------AGCAGC----------------------------AGTCGCAC----------
droSec2 scaffold_0:14752903-14753248 - CAGCAAGCAG--GCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGCTGGCTTCGCAGATCCTCGACCGGAAGTCACCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CGAGCGG---TTC------------------------------GAGTGCGCAG-------------------------------------------------------CAGCA------------------------ACAACAACAGAA------------------------------------TGCCCAGCAGCAGCA---TCAGGGC---TCGCAG------------------------CA---------------------------------------------GCA------------------GCAGCA----------------------ACAGAATGTGGTGCAGCAGCAAAATGTGGCGCA---GCAGCAGCA------C---------------ATGC------AG------CAGCAAC------AGCAGC----------------------------AGTCGCAT----------
dm3 chr3R:7201415-7201766 + CAGCAAGCAA--GCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGCTGGCTTCGCAGATCCTCGACCGGAAGTCACCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGA--CCG---CGAGCGG---GTC------------------------------GAGTGCGCAG-------------------------------------------------------CAGCA------------------------ACAGCAACAGAA------------------------------------TGCCCAGCAGCAGCA---TCAGGGC---TCGCAG------------------------CA---------------------------------------------GCA------------------GCAGCA----------------------ACAGAATGTGGTGCAGCAGCAGAATGTGGCGCA---GCAGCAGCA------T---------------ATGC------AG------CAGCAGCAGCAACAGCAGC----------------------------AGTCGCAT----------
droEre2 scaffold_4770:14411871-14412222 - der_628 CAGCAAGCAG--GCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGCTGGCTTCCCAGATCCTCGACCGGAAATCACCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CGAGCGG---TTC------------------------------GAGTGCGCAG-------------------------------------------------------CAACA------------------------ACAGCAACAGAA------------------------------------TGCCCAGCAGCAGCA---TCAGGCC---TCGCAG------------------------CA---------------------------------------------GCA------------------GCAGCA----------------------ACAGAATGTGGTGCAGCAGCAGAATGTAGCACA---GCAGCAGCA------C---------------ATGC------AG------CAGCAGCAACAACAGCAGC----------------------------AATCGCAT----------
droYak3 3R:11243292-11243646 + dya_1008 CAGCAAGCAG--GCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGCTGGCTTCGCAGATCCTCGACCGGAAATCGCCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CGAGCGG---GTC------------------------------GAGTGCGCAG-------------------------------------------------------CAGCA------------------------ACAGCAACAGAATGC------AC---AGCAGCAGC---------------------AGCAGCA---TCAGGGC---TCGCAG------------------------CA---------------------------------------------GCA---------------------GCA----------------------ACAGAATGTGGTGCAGCAGCAGAATGTGGCGCA---GCAGCAGCA------C---------------ATGC------AG------CAGCAGCAACAACAGCAGC----------------------------AGTCGCAT----------
droEug1 scf7180000409797:834646-834994 + CAGCAAACAG--GCGGACTCTGTGACTGCAGCGGCCGAACAACTAAACAAGGACCTGCTGCTGGCTTCGCAGATCCTCGACCGGAAGTCACCGCGCACCAAAGTAG---CGGATAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CGAATGG---GTC------------------------------GAGTGCGCAG-------------------------------------------------------CAGCA------------------------ACAGCAGCAGAA------------------------------------TGCTCAGCAGCAACA---TCAGAGC---TCGCAA------------------------CA---------------------------------------------GCA------------------GCAACA----------------------ACAGCAGCAAGCGCAGCAACAGAATGTGGCGCA---ACAACAGCA------T---------------ATGC------AG------CAGCAACAGC---AGCAGC----------------------------AATCGCAT----------
droBia1 scf7180000302075:3552461-3552821 - CAGCAAGCAG--GCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGCTCGCCTCGCAGATCCTCGACCGGAAATCGCCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAGCGC--CTGTGTCGAGTGGTGGGTC------------------------------GAATGGGCAG-------------------------------------------------------CAGCAACAGCAGCAGCAGCA---------GCAGCAACAGAA------------------------------------TGCCCAGCAGCAACA---TGCGAGT---GCGCAG------------------------CA---------------------------------------------ACA------GCAACAG---CAGCAGC---AGACGT-------------------------CGC---A------------GCA---GCAACAGCA------C---------------CTGC------AA------CAGCAGCAGCAACAACAGC----------------------------AATCGCAT----------
droTak1 scf7180000415763:230913-231243 - CAGCAAGCAG--GCGGACTCCGTGACGGCGGCAGCCGAGCAACTGAACAAGGACCTGCTGCTCGCCTCGCAGATCCTCGACCGGAAATCGCCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAAAATGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCGTCGCGAGTGG---CTC------------------------------GAGTGGGCAGCAGCAGCAG-------------------------------------CA------------------AC------------------------AGAC---------GTCGCAA---------------------------CAGCAACA-TGTTAG--TAACGTG---------------------------------------------------------------------------CA---ACAACAACAG---ACGCCGCA----------------------A------------------------------CA---GCAGCAACA------T---------------TTGC------AG------CAGCAACAGCAA---CCAC----------------------------AGTCGCAT----------
droEle1 scf7180000491080:2493022-2493391 - TAGCAAGCAG--GCGGACTCCGTGACGGCGGCCGCCGAACAGCTGAACAAGGACCTGCTGCTGGCCTCCCAGATCCTCGACCGCAAGTCGCCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCATCGCGCCCGCATCACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CCAGCGG---GTC------------------------------GAGTGGGCAGCAACAGCAG-------------------------------------CA------------------GCAGCAGCAGCAACAGCAACAGCAACAGAA------------------------------------TGCGCAGCAGCAACA---TCAGGTC---GCGCAG------------------------CA---------------------------------------------GCA------ACAACAG---CAGCCGCA----------------------ACA---------GCAGCAGCAGAGTGTGGGGCAACCGCAGCAGCA------C---------------CTGC------AG------C------------AGCAGC----------------------------AATCGCAT----------
droRho1 scf7180000779097:111018-111366 - CAGCAAGCAG--GCGGACTCCGTGACCGCGGCGGCCGAGCAGCTGAACAAGGACCTGCTGCTCGCTTCGCAGATCCTCGACCGGAAATCGCCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCATCACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CGAGTGG---GTC------------------------------GAGTGGGCAG-------------------------------------------------------CAGCAACAGCAAC---------------------AGCAGAA------------------------------------TGCACAGCAGCAACA---TCAGGTA---TCGCAG------------------------CA---------------------------------------------GCA------GCAACAG---CAGC-------------------------------------CGCAGCAGCCGAATGTGGCGCA---ACAACAGCA------T---------------TTGC------AG------CAGCAGCAGCAACAGCAGC----------------------------AATCGCAT----------
droFic1 scf7180000453912:1686710-1687067 - TAGCAAGCAG--GCGGACTCGGTGACCGCAGCGGCGGAGCAGCTGAACAAGGACCTCCTGCTGGCATCGCAGATCCTCGACCGGAAGTCGCCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCG-CAAAACGGACAAA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGA--ACG---CGAGCGG---TTC------------------------------GAGTGCGCAG-------------------------------------------------------CAGCAACAGCAGC---------------------AGCAGAATGC------AC---AGCAGCAGCAGCAGCAACAC------------------------AGC---TCGCAG------------------------CA---------------------------------------------AC---------AACAG---TCGCAGCA----------------------ACAGCA------GCCACCGCAAAATGTGTCGCA---GCA---ACA------C---------------ATAC------AA------CAGCAACAGCAGCAACAGC----------------------------AATCGCAT----------
droKik1 scf7180000302276:549546-549894 - CAGCAAGCAG--GCGGACTCCGTGACGGCAGCGGCCGAGCAGCTCAACAAGGACCTGCTGCTGGCCTCGCAGATCCTCGACCGGAAGTCGCCGCGCACCAAGGTGG---CGGACCG----------------------------------------GCCC-CAGAACGGACCCG---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCTCCCAACCGC--CGG---CGAGCGG---GGC------------------------------GAGTGCGCAGCAGCAGCA----------------------------------------------------------------------------------GCAGAATGC------GC---CGCAGCAGCAGCAGCCACCAAGTGCCCAACAACAACA---TCCGGGC---TCCCAG------------------------CA---------------------------------------------GCA------------------GC----------------------------------------AGCAGCAAAACGCAGTGCA---GCAACAGCA------C---------------TTGC------AG------CAGCA---------GCAGC----------------------------AAGCGCAT----------
droAna3 scaffold_13340:10624102-10624426 - CAGCAAGCAG--GCGGACTCCGTGACCGCAGCCGCCGAACAGCTGAACAAGGACCTGCTGCTGGCATCACAGATCCTGGACAGGAAATCGCCGCGCACCAAGGTGG---CAGACCG----------------------------------------GCCC-CAGAACGGACCAA---CACCCGCATCCCAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCGCCCAGCCGT--CCG---CG------------------------------------------AATGCGCAGCAGCAGTTG-------------------------------------CA------------------GC------------------------AGGC---TCAGGGATCCCAGCAGCAACAGCAGCAGCCAGGATCGCAA---------------------------------------------------CA---------------------------------------------GC---------CACAGCCAAG----------------------TTCGCAGCA---------GCAGCAGCAGAATGTGGTGCA------------------------------------------------------------------GCAAC----------------------------AGCCGCAT----------
droBip1 scf7180000396374:452324-452648 + CAGCAAGCAG--GCCGACTCCGTGACCGCAGCGGCCGAGCAGCTGAACAAGGACCTGCTGCTAGCCTCCCAGATCCTGGACAGGAAATCGCCGCGCACCAAGGTGG---CAGACCG----------------------------------------GCCC-CAGAACGGACCCA---CACCCGCATCCCAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCGCCCAGCCGT--CCG---CG------------------------------------------AATGCGCAGCAGCAGCTG-------------------------------------CA------------------GC------------------------AGGC---TCAGGGATCCCAGCAGCAACAGCAGCAGCCAGGATCGCAA---------------------------------------------------CA---------------------------------------------GC---------CACAGCCAAG----------------------CTCGCAGCA---------GCAGCAGCAGAATGTGGCGCA---GCA---------------------------------------------------------------AC----------------------------AGCCGCAT----------
dp5 2:29212726-29213093 - dps_862 CAGCAAGCAG--GCGGACTCGGTGACAGCCGCCGCCGAGCAGCTCAACAAGGACCTGCTGCTGGCATCGCAGATACTCGACCGCAAGTCGCCGCGCACCAAAGTGG---CGGACAGAGGAGGA----------------------------CCCGGAGCC-CAGAACGGCCCCA---CGCCGACCACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCCCCTAGTCAAATGCCCCCCCAACCGC--C-G---CCAGCGGTG-GTCGTG-------------------------GCCAATGCCCAG-------------------------------------------------------CAGCAGCAGCAACAGCAGCA---------GCAGCAGCAGAA------------------------------------CGTGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGAATGTGCCACA---GCAGCAGCAGCAGCAGGCACCGCAACAGAATCCCC------AG------CAGCAAC------AGCAGC----------------------------CGCCGAATGTGCAGCATC
droPer2 scaffold_1383:9455-9762 - CAGCAGGCGGTGGCACAGGCGGCGGCGGTGGCGGTGGACC-----------GCCCGGCTCTCCGCTCTGCAGCTCCCCGTCCAGC-GTCACAGCATC-----GCAG---CAGGCCACAG---TCGCCGCAGTAGCAGCCGCCACATTTAATGGAAGTGCCACA---------------GATAGCAGCAT-GTCGGGCA---ACA------CATCACCGATAGCCAGCGGCGAGCCGCTGCTCCAGACGC--CGC---CC------------------------------------------GCCATGCAACAGCAGCAG-------------------------------------CA------------------GC---A------------ACAAC---AG---------------CAGCAACAA---------------------------------------------CAG------------------------CA---------------------------------------------GCA---GCAACAACAG---CAGCAGCA----------------------A------------------------------------CAGCAG---------------------------CAGCAGCAG------------CAGCAACAACAGC----------------------------AGCAGCAG----------
droWil2 scf2_1100000004902:4277696-4278062 - dwi_2476 TAGCAAGCAA--GCGGACTCGGTGACGGCAGCAGCAGAGCAGCTCAACAAGGATTTGTTATTGGCTTCCCAGATACTCGACCGGAAATCGCCCCGTACCAAAGTAG---CCGATCGCAGCGGA---------CACAGCGGCA-------ATACTGGCATC-CAGAATGGCCCCA---CGCCGGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAACCGC--CTA---CGGGCAA---CAA------------TCTTGCCGGTAATCCGAACAATGTGCAACAACAGCAG----------------------------------------------CAACA------------------------ACAGCAACAAAA------------------------------------TGCACAGCAACAACA---CCCATCG---TCGGCA------------------------CA---------------------------------------------GCA------------------GCCGCA----------------------ACA------------TCAGCCAAGTGTTCCCCA---GC---------------------------------------------------CAG------CGCCGC----------------------------CTCCACAT----------
droVir3 scaffold_13047:3247771-3248158 - dvi_15378 CAGCAAACAG--GCGGATTCGGTAACGGCGGCCGCCGAGCAGCTCAACAAGGATCTGATGCTGGCCTCCCAGATACTCGATCGCAAATCGCCGCGCACCAAAGTCGTCGCCGATCGCGG---ACTCAGCGGCAACAGCGGCC-------ATCCGGGCGCC-CAGAACGGTCCGA---CGCCAGCAACACAATCAGGTA---ATAATGGTTCAATACTATTAGCTAATAGTCAG------------------------CAGGCGA---GTCAGGGTC------------------------A---GGGCAACAGCAGTA------------------GTGCTGTCAATGCAAATCAGCAGCAGCAGCAGCA------------------------ACAACAACAGCA------------------------------------------------------TCAACTT---GCACAG---------------------CAGCA------------------------------------GCAGCA---GCA------------------GCAACAACAGACCGCACAGCAGCA-CCAACA---------------------------GCA---ACAGCAGCA------A---------------CAAC------AG------CAGCAAC------AGCAGC----------------------------AACAACAG----------
droMoj3 scaffold_6540:20288401-20288779 - dmo_2001 CAGCAAGCAG--GCGGACTCGGTGACCGCAGCTGCCGAGCAGCTCAACAAGGATCTGATGCTGGCCTCCCAGATACTCGATCGCAAGTCGCCGCGCACCAAGGTCGTCGCGGATCGCGG---CCACGGCGGCAGCAGCAGCAACGCC-AACTCGGGCGCC-CAGAGCGGATCGG---CATCGGCCATACAATCAGGTAACAATAACGCCTCACTACTACTAGCTAATAGTCAGC------------------AG---CAAGCGA---GTCAGGGTC------------------------A---GGGCAACAGCAGCAG-------------------------------------CA------------------GC------------------------AGCA---------------------------------------CCAGCAGCAGCACTGTCAG--T---CAACAGCAACAGCAGCAACTTGCACAG---CA---------------------------------------------GCA-------------------------------------------------------GCAGCAGCAGCAACAGGCCGCACA---ACAACAGCA------C---------------CAAC------AG------CAGCAAC------AGCAAC----------------------------AGCAGCCT----------
droGri2 scaffold_15074:7620694-7621157 - dgr_254 CAGCAAGCAG--GCGGATTCAGTGACCGCAGCAGCGGAGCAGCTCAACAAGGATCTGATGTTGGCCTCGCAGATACTCGACCGGAAGTCGCCGCGAACGAAGGTCGTCGCGGATCGGGG---A----------------------------ACGGGCGCC-CAAAATGGTCCGA---CGCCAGCAACACAATCAGGTA---ATAATGGTTCACTACTACTAGCTAATAGTCAAATGCCCGCACAGCAGCAGCAG---CAGGCAA---GTCAGAGTCAAAGTC------------------A---AAACAGCAACAGCAGCAGCAGCAACAACAGTAATGTTGTC------------------------------------------------------------AA------------------------------------TGCACAGCAGCAGCA---ACAGC---------------AGCAGCAACTTGCACAACAGCAGCAGCATAGCGCACAGCAGCAACTTGCACAGCAACAACAACAGCAGCAGCAACAACAACAG---CAGCAGCA----------------------A------------------------------------CAGCAG---------------------------CAGCAGCAGCAGCAACAGCAGCAGCAA---CAACAGCCGCAACTAAACCAATCACAAGTCATGTCTGCAA----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAGCAAGCAG--GCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGCTGGCTTCGCAGATCCTCGACCGGAAGTCACCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CGAGCGG---TTC------------------------------GAGTGCGCAG-------------------------------------------------------CAGCA------------------------ACAACAACAGAA------------------------------------TGCCCAGCAGCAGCA---TCAGGGC---TCGCAG------------------------CA---------------------------------------------GCA------------------GCAGCA----------------------ACAGAATGTGGTGCAGCAGCAAAATGTGGCGCA---GCAGCAGCA------C---------------ATGC------AG------CAGCAAC------AGCAGC----------------------------AGTCGCAC----------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................GCAGATCCTCGACCGGAAGTCACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.00300300000000000000
................................TGCCGAGCAGCTGAACAAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
.......................................................................GATCCTCGACCGGAAGTCACCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
................................TGCCGAGCAGCTGAACAAGGACCTGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------GCAGCA----------------------ACAGAAT...............................................................................................................................................15170.06100000000010000000
...............GACTCCGTGACCGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
droSec2
CAGCAAGCAG--GCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGCTGGCTTCGCAGATCCTCGACCGGAAGTCACCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CGAGCGG---TTC------------------------------GAGTGCGCAG-------------------------------------------------------CAGCA------------------------ACAACAACAGAA------------------------------------TGCCCAGCAGCAGCA---TCAGGGC---TCGCAG------------------------CA---------------------------------------------GCA------------------GCAGCA----------------------ACAGAATGTGGTGCAGCAGCAAAATGTGGCGCA---GCAGCAGCA------C---------------ATGC------AG------CAGCAAC------AGCAGC----------------------------AGTCGCAT----------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC------AGCAGC----------------------------AGTCGCA...........1960.1710010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------------------------CA---------------------------------------------GCA------------------GCAGCA----------------------ACAGA.................................................................................................................................................19200.0510001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC------AG------CAGCAAC------AGCAGC----------------------------A.................19200.0510010
dm3
CAGCAAGCAA--GCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGCTGGCTTCGCAGATCCTCGACCGGAAGTCACCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGA--CCG---CGAGCGG---GTC------------------------------GAGTGCGCAG-------------------------------------------------------CAGCA------------------------ACAGCAACAGAA------------------------------------TGCCCAGCAGCAGCA---TCAGGGC---TCGCAG------------------------CA---------------------------------------------GCA------------------GCAGCA----------------------ACAGAATGTGGTGCAGCAGCAGAATGTGGCGCA---GCAGCAGCA------T---------------ATGC------AG------CAGCAGCAGCAACAGCAGC----------------------------AGTCGCAT----------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................AAGGACCTGCTGCTGGCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CCCTCCCAAACGA--CCG---CGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................CGACCGGAAGTCACCGCGCACCAAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................................................ATCAGGTA---ATAATGGTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.................CTCCGTGACCGCGGCTGCCGAGCAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGC----------------------------AGTCGCA...........2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................AG-------------------------------------------------------CAGCA------------------------ACAGCAACAGAA------------------------------------TGC.............................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CAGCAGCAGCAACAGCAGC----------------------------AGTC..............2540.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---TCGCAG------------------------CA---------------------------------------------GCA------------------GCAGC.............................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCA---GCAGCAGCA------T---------------ATGA------T........................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGC----------------------------AGTCG.............2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------T---------------ATGC------AG------CAGCAGCAGCA......................................................1950.2010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AG-------------------------------------------------------CAGCA------------------------ACAGCAACAGAA------------------------------------................................................................................................................................................................................................................................................................................................................19110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAGCAGC----------------------------AGT...............22110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGC----------------------------AGTC..............2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GCGCAG-------------------------------------------------------CAGCA------------------------ACAGCAA.........................................................................................................................................................................................................................................................................................................................................................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGC----------------------------AGTCG.............1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------AG------CAGCAGCAGCAACA...................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CAG-------------------------------------------------------CAGCA------------------------ACAGCAACAGAA------------------------------------................................................................................................................................................................................................................................................................................................................20100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------AG------CAGCAGCAGCAACAGCA................................................21200.1020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CAGCAGCAGCAACAGC.................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAGCAAGCAG--GCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGCTGGCTTCCCAGATCCTCGACCGGAAATCACCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CGAGCGG---TTC------------------------------GAGTGCGCAG-------------------------------------------------------CAACA------------------------ACAGCAACAGAA------------------------------------TGCCCAGCAGCAGCA---TCAGGCC---TCGCAG------------------------CA---------------------------------------------GCA------------------GCAGCA----------------------ACAGAATGTGGTGCAGCAGCAGAATGTAGCACA---GCAGCAGCA------C---------------ATGC------AG------CAGCAGCAACAACAGCAGC----------------------------AATCGCAT----------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................GGACAG----------------------------------------GCCC-CAGAACGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..............................................................GGCTTCCCAGATCCTCGACCGGAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.................................GCCGAGCAGCTGAACAAGGACCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------CA---------------------------------------------GCA------------------GCAGCA----------------------ACAGAA................................................................................................................................................19180.0610000100
droYak3
CAGCAAGCAG--GCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGCTGGCTTCGCAGATCCTCGACCGGAAATCGCCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CGAGCGG---GTC------------------------------GAGTGCGCAG-------------------------------------------------------CAGCA------------------------ACAGCAACAGAATGC------AC---AGCAGCAGC---------------------AGCAGCA---TCAGGGC---TCGCAG------------------------CA---------------------------------------------GCA---------------------GCA----------------------ACAGAATGTGGTGCAGCAGCAGAATGTGGCGCA---GCAGCAGCA------C---------------ATGC------AG------CAGCAGCAACAACAGCAGC----------------------------AGTCGCAT----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------C---------------ATGC------AG------CAGCAGCA.........................................................1930.33101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------AG------CAGCAGCAACAACAGCAGC----------------------------..................23200.05100100000000
droEug1
CAGCAAACAG--GCGGACTCTGTGACTGCAGCGGCCGAACAACTAAACAAGGACCTGCTGCTGGCTTCGCAGATCCTCGACCGGAAGTCACCGCGCACCAAAGTAG---CGGATAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CGAATGG---GTC------------------------------GAGTGCGCAG-------------------------------------------------------CAGCA------------------------ACAGCAGCAGAA------------------------------------TGCTCAGCAGCAACA---TCAGAGC---TCGCAA------------------------CA---------------------------------------------GCA------------------GCAACA----------------------ACAGCAGCAAGCGCAGCAACAGAATGTGGCGCA---ACAACAGCA------T---------------ATGC------AG------CAGCAACAGC---AGCAGC----------------------------AATCGCAT----------SizeHit CountTotal NormTotal
No Reads
droBia1
CAGCAAGCAG--GCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGCTCGCCTCGCAGATCCTCGACCGGAAATCGCCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAGCGC--CTGTGTCGAGTGGTGGGTC------------------------------GAATGGGCAG-------------------------------------------------------CAGCAACAGCAGCAGCAGCA---------GCAGCAACAGAA------------------------------------TGCCCAGCAGCAACA---TGCGAGT---GCGCAG------------------------CA---------------------------------------------ACA------GCAACAG---CAGCAGC---AGACGT-------------------------CGC---A------------GCA---GCAACAGCA------C---------------CTGC------AA------CAGCAGCAGCAACAACAGC----------------------------AATCGCAT----------SizeHit CountTotal NormTotal
No Reads
droTak1
CAGCAAGCAG--GCGGACTCCGTGACGGCGGCAGCCGAGCAACTGAACAAGGACCTGCTGCTCGCCTCGCAGATCCTCGACCGGAAATCGCCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAAAATGGACCCA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCGTCGCGAGTGG---CTC------------------------------GAGTGGGCAGCAGCAGCAG-------------------------------------CA------------------AC------------------------AGAC---------GTCGCAA---------------------------CAGCAACA-TGTTAG--TAACGTG---------------------------------------------------------------------------CA---ACAACAACAG---ACGCCGCA----------------------A------------------------------CA---GCAGCAACA------T---------------TTGC------AG------CAGCAACAGCAA---CCAC----------------------------AGTCGCAT----------SizeHit CountTotal NormTotal
No Reads
droEle1
TAGCAAGCAG--GCGGACTCCGTGACGGCGGCCGCCGAACAGCTGAACAAGGACCTGCTGCTGGCCTCCCAGATCCTCGACCGCAAGTCGCCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCATCGCGCCCGCATCACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CCAGCGG---GTC------------------------------GAGTGGGCAGCAACAGCAG-------------------------------------CA------------------GCAGCAGCAGCAACAGCAACAGCAACAGAA------------------------------------TGCGCAGCAGCAACA---TCAGGTC---GCGCAG------------------------CA---------------------------------------------GCA------ACAACAG---CAGCCGCA----------------------ACA---------GCAGCAGCAGAGTGTGGGGCAACCGCAGCAGCA------C---------------CTGC------AG------C------------AGCAGC----------------------------AATCGCAT----------SizeHit CountTotal NormTotal
No Reads
droRho1
CAGCAAGCAG--GCGGACTCCGTGACCGCGGCGGCCGAGCAGCTGAACAAGGACCTGCTGCTCGCTTCGCAGATCCTCGACCGGAAATCGCCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCC-CAGAACGGACCCA---CGCCCGCATCACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGC--CCG---CGAGTGG---GTC------------------------------GAGTGGGCAG-------------------------------------------------------CAGCAACAGCAAC---------------------AGCAGAA------------------------------------TGCACAGCAGCAACA---TCAGGTA---TCGCAG------------------------CA---------------------------------------------GCA------GCAACAG---CAGC-------------------------------------CGCAGCAGCCGAATGTGGCGCA---ACAACAGCA------T---------------TTGC------AG------CAGCAGCAGCAACAGCAGC----------------------------AATCGCAT----------SizeHit CountTotal NormTotal
No Reads
droFic1
TAGCAAGCAG--GCGGACTCGGTGACCGCAGCGGCGGAGCAGCTGAACAAGGACCTCCTGCTGGCATCGCAGATCCTCGACCGGAAGTCGCCGCGCACCAAGGTGG---CGGACAG----------------------------------------GCCG-CAAAACGGACAAA---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGA--ACG---CGAGCGG---TTC------------------------------GAGTGCGCAG-------------------------------------------------------CAGCAACAGCAGC---------------------AGCAGAATGC------AC---AGCAGCAGCAGCAGCAACAC------------------------AGC---TCGCAG------------------------CA---------------------------------------------AC---------AACAG---TCGCAGCA----------------------ACAGCA------GCCACCGCAAAATGTGTCGCA---GCA---ACA------C---------------ATAC------AA------CAGCAACAGCAGCAACAGC----------------------------AATCGCAT----------SizeHit CountTotal NormTotal
No Reads
droKik1
CAGCAAGCAG--GCGGACTCCGTGACGGCAGCGGCCGAGCAGCTCAACAAGGACCTGCTGCTGGCCTCGCAGATCCTCGACCGGAAGTCGCCGCGCACCAAGGTGG---CGGACCG----------------------------------------GCCC-CAGAACGGACCCG---CGCCCGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCTCCCAACCGC--CGG---CGAGCGG---GGC------------------------------GAGTGCGCAGCAGCAGCA----------------------------------------------------------------------------------GCAGAATGC------GC---CGCAGCAGCAGCAGCCACCAAGTGCCCAACAACAACA---TCCGGGC---TCCCAG------------------------CA---------------------------------------------GCA------------------GC----------------------------------------AGCAGCAAAACGCAGTGCA---GCAACAGCA------C---------------TTGC------AG------CAGCA---------GCAGC----------------------------AAGCGCAT----------SizeHit CountTotal NormTotal
No Reads
droAna3
CAGCAAGCAG--GCGGACTCCGTGACCGCAGCCGCCGAACAGCTGAACAAGGACCTGCTGCTGGCATCACAGATCCTGGACAGGAAATCGCCGCGCACCAAGGTGG---CAGACCG----------------------------------------GCCC-CAGAACGGACCAA---CACCCGCATCCCAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCGCCCAGCCGT--CCG---CG------------------------------------------AATGCGCAGCAGCAGTTG-------------------------------------CA------------------GC------------------------AGGC---TCAGGGATCCCAGCAGCAACAGCAGCAGCCAGGATCGCAA---------------------------------------------------CA---------------------------------------------GC---------CACAGCCAAG----------------------TTCGCAGCA---------GCAGCAGCAGAATGTGGTGCA------------------------------------------------------------------GCAAC----------------------------AGCCGCAT----------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................GGACCTGCTGCTGGCATCACAGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...............GACTCCGTGACCGCAGCCGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCCAGGAT..............................................................................................................................................................................................................................................................................................................1811.001010000
.................................................................................AGGAAATCGCCGCGCACCAAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
droBip1
CAGCAAGCAG--GCCGACTCCGTGACCGCAGCGGCCGAGCAGCTGAACAAGGACCTGCTGCTAGCCTCCCAGATCCTGGACAGGAAATCGCCGCGCACCAAGGTGG---CAGACCG----------------------------------------GCCC-CAGAACGGACCCA---CACCCGCATCCCAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCGCCCAGCCGT--CCG---CG------------------------------------------AATGCGCAGCAGCAGCTG-------------------------------------CA------------------GC------------------------AGGC---TCAGGGATCCCAGCAGCAACAGCAGCAGCCAGGATCGCAA---------------------------------------------------CA---------------------------------------------GC---------CACAGCCAAG----------------------CTCGCAGCA---------GCAGCAGCAGAATGTGGCGCA---GCA---------------------------------------------------------------AC----------------------------AGCCGCAT----------SizeHit CountTotal NormTotal
No Reads
dp5
CAGCAAGCAG--GCGGACTCGGTGACAGCCGCCGCCGAGCAGCTCAACAAGGACCTGCTGCTGGCATCGCAGATACTCGACCGCAAGTCGCCGCGCACCAAAGTGG---CGGACAGAGGAGGA----------------------------CCCGGAGCC-CAGAACGGCCCCA---CGCCGACCACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCCCCTAGTCAAATGCCCCCCCAACCGC--C-G---CCAGCGGTG-GTCGTG-------------------------GCCAATGCCCAG-------------------------------------------------------CAGCAGCAGCAACAGCAGCA---------GCAGCAGCAGAA------------------------------------CGTGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGAATGTGCCACA---GCAGCAGCAGCAGCAGGCACCGCAACAGAATCCCC------AG------CAGCAAC------AGCAGC----------------------------CGCCGAATGTGCAGCATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............GCGGACTCGGTGACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000001
..GCAAGCAG--GCGGACTCGGTGACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
................................................................................................................................................................................................................................................................................................................GCCCAG-------------------------------------------------------CAGCAGCAGCAAC................................................................................................................................................................................................................................................................................................................................................................................19180.1120000200000
...............................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCA---------GCAGCA..........................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
droPer2
CAGCAGGCGGTGGCACAGGCGGCGGCGGTGGCGGTGGACC-----------GCCCGGCTCTCCGCTCTGCAGCTCCCCGTCCAGC-GTCACAGCATC-----GCAG---CAGGCCACAG---TCGCCGCAGTAGCAGCCGCCACATTTAATGGAAGTGCCACA---------------GATAGCAGCAT-GTCGGGCA---ACA------CATCACCGATAGCCAGCGGCGAGCCGCTGCTCCAGACGC--CGC---CC------------------------------------------GCCATGCAACAGCAGCAG-------------------------------------CA------------------GC---A------------ACAAC---AG---------------CAGCAACAA---------------------------------------------CAG------------------------CA---------------------------------------------GCA---GCAACAACAG---CAGCAGCA----------------------A------------------------------------CAGCAG---------------------------CAGCAGCAG------------CAGCAACAACAGC----------------------------AGCAGCAG----------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................CCACAG---TCGCCGCAGTAGCAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501001000
.............................................................CCGCTCTGCAGCTCCCCGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501001000
..................................................................................................................................................................................GATAGCAGCAT-GTCGGGCA---AC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA----------------------A------------------------------------CAGCAG---------------------------CAGCAGCA........................................................................21200.102002000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---CAGCAGCA----------------------A------------------------------------CAGCAG---------------------------C...............................................................................21200.051001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA----------------------A------------------------------------CAGCAG---------------------------CAGCAGCA........................................................................22200.051000010
..................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAG-------------------------------------CA------------------GC---A------------ACA.............................................................................................................................................................................................................................................................................................................................................................21200.051001000
droWil2
TAGCAAGCAA--GCGGACTCGGTGACGGCAGCAGCAGAGCAGCTCAACAAGGATTTGTTATTGGCTTCCCAGATACTCGACCGGAAATCGCCCCGTACCAAAGTAG---CCGATCGCAGCGGA---------CACAGCGGCA-------ATACTGGCATC-CAGAATGGCCCCA---CGCCGGCAACACAATCAGGTA---ATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAACCGC--CTA---CGGGCAA---CAA------------TCTTGCCGGTAATCCGAACAATGTGCAACAACAGCAG----------------------------------------------CAACA------------------------ACAGCAACAAAA------------------------------------TGCACAGCAACAACA---CCCATCG---TCGGCA------------------------CA---------------------------------------------GCA------------------GCCGCA----------------------ACA------------TCAGCCAAGTGTTCCCCA---GC---------------------------------------------------CAG------CGCCGC----------------------------CTCCACAT----------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCCA---GC---------------------------------------------------CAG------CGCCGC----------------------------CT................2111.00100010
..................................CAGAGCAGCTCAACAAGGATTTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.AGCAAGCAA--GCGGACTCGGTGACGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
..............................................................................................................................................................................................................................................................................................................ATGTGCAACAACAGCAG----------------------------------------------CAACA------------------------................................................................................................................................................................................................................................................................................................................................................................2220.50100100
....................................................................................................................................................................................................................................................................................................................AACAACAGCAG----------------------------------------------CAACA------------------------ACAGC...........................................................................................................................................................................................................................................................................................................................................................21200.05100010
droVir3
CAGCAAACAG--GCGGATTCGGTAACGGCGGCCGCCGAGCAGCTCAACAAGGATCTGATGCTGGCCTCCCAGATACTCGATCGCAAATCGCCGCGCACCAAAGTCGTCGCCGATCGCGG---ACTCAGCGGCAACAGCGGCC-------ATCCGGGCGCC-CAGAACGGTCCGA---CGCCAGCAACACAATCAGGTA---ATAATGGTTCAATACTATTAGCTAATAGTCAG------------------------CAGGCGA---GTCAGGGTC------------------------A---GGGCAACAGCAGTA------------------GTGCTGTCAATGCAAATCAGCAGCAGCAGCAGCA------------------------ACAACAACAGCA------------------------------------------------------TCAACTT---GCACAG---------------------CAGCA------------------------------------GCAGCA---GCA------------------GCAACAACAGACCGCACAGCAGCA-CCAACA---------------------------GCA---ACAGCAGCA------A---------------CAAC------AG------CAGCAAC------AGCAGC----------------------------AACAACAG----------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA------------------------ACAACAACAGCA------------------------------------------------------TCA...........................................................................................................................................................................................................................................................................................2430.331001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------CAGCA------------------------------------GCAGCA---GCA------------------GCAAC.............................................................................................................................................................................20200.204004000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACA---------------------------GCA---ACAGCAGCA------A---------------CA.................................................................................21100.101000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------A---------------CAAC------AG------CAGCAAC------AGCAGC----------------------------AACAAC............28130.081000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GCACAG---------------------CAGCA------------------------------------GCAGCA---GC.....................................................................................................................................................................................................20190.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACA---------------------------GCA---ACAGCAGCA------C---------------...................................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA------------------------ACAACAACAGC.....................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCA------------------------ACAACAAC........................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------GCA---ACAGCAGCA------A---------------CAAC------AG------CAGC.............................................................24200.051000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA---------------------------GCA---ACAGCAGCA------A---------------CA.................................................................................20200.051000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGCAGCAGCA------------------------ACAA............................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------A---------------CAAC------AG------CAGCAAC------AGCAGC----------------------------A.................24200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------------------------GCAGCA---GCA------------------GCAACAACA.........................................................................................................................................................................20200.051000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCA------------------------ACAACAACAGCA------------------------------------------------------..............................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGCAGCAGCA------------------------AC..............................................................................................................................................................................................................................................................................................................................................................21200.051000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------A---------------CAAC------AG------CAGCAAC------AGC.................................................18200.051000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCA------------------------ACA.............................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCA------------------------ACAACA..........................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA------A---------------CAAC------AG------CAGC.............................................................19200.051000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGCAGCAGCA------------------------ACAACA..........................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA------------------------ACAACAACAGCA------------------------------------------------------..............................................................................................................................................................................................................................................................................................25200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
CAGCAAGCAG--GCGGACTCGGTGACCGCAGCTGCCGAGCAGCTCAACAAGGATCTGATGCTGGCCTCCCAGATACTCGATCGCAAGTCGCCGCGCACCAAGGTCGTCGCGGATCGCGG---CCACGGCGGCAGCAGCAGCAACGCC-AACTCGGGCGCC-CAGAGCGGATCGG---CATCGGCCATACAATCAGGTAACAATAACGCCTCACTACTACTAGCTAATAGTCAGC------------------AG---CAAGCGA---GTCAGGGTC------------------------A---GGGCAACAGCAGCAG-------------------------------------CA------------------GC------------------------AGCA---------------------------------------CCAGCAGCAGCACTGTCAG--T---CAACAGCAACAGCAGCAACTTGCACAG---CA---------------------------------------------GCA-------------------------------------------------------GCAGCAGCAGCAACAGGCCGCACA---ACAACAGCA------C---------------CAAC------AG------CAGCAAC------AGCAAC----------------------------AGCAGCCT----------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------C---------------CAAC------AG------CAGCAAC------AGCAAC----------------------------AG................2370.141000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------------------------------GCAGCAGCAGCAACAGG............................................................................................................................18200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------AG------CAGCAAC------AGCAAC----------------------------AGCAGC............25200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CA---------------------------------------------GCA-------------------------------------------------------GCAGCAGCAGCAACAGG............................................................................................................................23200.051100000
...................................................................................................................................................................................................................................................................................................................CAACAGCAGCAG-------------------------------------CA------------------GC------------------------AGCA---------------------------------------C............................................................................................................................................................................................................................................................................................................21200.051000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------C---------------CAAC------AG------CAGCAAC------A...................................................19200.051000010
droGri2
CAGCAAGCAG--GCGGATTCAGTGACCGCAGCAGCGGAGCAGCTCAACAAGGATCTGATGTTGGCCTCGCAGATACTCGACCGGAAGTCGCCGCGAACGAAGGTCGTCGCGGATCGGGG---A----------------------------ACGGGCGCC-CAAAATGGTCCGA---CGCCAGCAACACAATCAGGTA---ATAATGGTTCACTACTACTAGCTAATAGTCAAATGCCCGCACAGCAGCAGCAG---CAGGCAA---GTCAGAGTCAAAGTC------------------A---AAACAGCAACAGCAGCAGCAGCAACAACAGTAATGTTGTC------------------------------------------------------------AA------------------------------------TGCACAGCAGCAGCA---ACAGC---------------AGCAGCAACTTGCACAACAGCAGCAGCATAGCGCACAGCAGCAACTTGCACAGCAACAACAACAGCAGCAGCAACAACAACAG---CAGCAGCA----------------------A------------------------------------CAGCAG---------------------------CAGCAGCAGCAGCAACAGCAGCAGCAA---CAACAGCCGCAACTAAACCAATCACAAGTCATGTCTGCAA----------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGCAA---CAACA.............................................27200.05110
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAG---CAGCAGCA----------------------A------------------------------------CAGCA............................................................................................................24200.05110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---ACAGC---------------AGCAGCAAC.................................................................................................................................................................................................................................................................23200.05110

Generated: 05/18/2015 at 02:57 PM