ID:

dsi_1884

 Coordinate:

3r:10634073-10634222 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.9 -22.8 -22.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCAACATTCTAGCCGCGACCCGTTTTAAATGAGATTTAACTAGATAAATGGTGCGTATCTTCAATCCCATATAGTTCTTATAACCCAAATGCGCTTTGATAAATGGAATGTCTTCCACATCAGTTTTTTAAAACAACTAGCGGAAGTCGAAATCGCTTTGAACCGATTTTATAACCGATTGATTTTTAAGTTGGTGCATTTCCTACATAAAACGTTATAAAATGCTAGATTGTAATAAATCAAGTTAAAT
**************************************************.....................................(((((((.(((((...(((((....))))).)))))..........(((((...((((((((((((((........)))))..........))))))))).))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR902009
testis
............................................................................................................................TTTTTAAAACAACTAGCGGA.......................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................................................................................GGAAGTCGAAATCGCTTTGAACCGAT................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................CACTGTAAACCGATTTTATAACCGAT....................................................................... 26 3 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................GAAGTCGGAATCGCT............................................................................................. 15 1 15 0.80 12 7 1 0 0 2 2 0 0
.......TCTAACCGCGACCCGTA.................................................................................................................................................................................................................................. 17 2 4 0.25 1 1 0 0 0 0 0 0 0
..............................................................................................................................................GAAATCGAAATCGCTGTGA......................................................................................... 19 2 11 0.18 2 2 0 0 0 0 0 0 0
..............................................................................................................................................GAAATCGAAATCGCTGTGAAG....................................................................................... 21 3 18 0.17 3 1 1 0 0 1 0 0 0
..............................................................................................................................................GAAGTCGTAATCGCT............................................................................................. 15 1 6 0.17 1 1 0 0 0 0 0 0 0
...............................................................................................................................................AAATCGAAATCGCTGTGAA........................................................................................ 19 2 15 0.13 2 2 0 0 0 0 0 0 0
........CTAACCGCGACCCGTA.................................................................................................................................................................................................................................. 16 2 14 0.07 1 1 0 0 0 0 0 0 0
.......TCTAACCGCGATCCGT................................................................................................................................................................................................................................... 16 2 18 0.06 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................TTATAACCGGCTGCTTTTT............................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1
.....................................................................................................................................................................ATTTTATAAACGATGGATGT................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 1 0
................................................................................................................................................AATCGAAATCGCTGTGAACG...................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0
.........TAACCGCGACCCGTA.................................................................................................................................................................................................................................. 15 2 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................................TCGAAATCGCTGTGA......................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

AGTTGTAAGATCGGCGCTGGGCAAAATTTACTCTAAATTGATCTATTTACCACGCATAGAAGTTAGGGTATATCAAGAATATTGGGTTTACGCGAAACTATTTACCTTACAGAAGGTGTAGTCAAAAAATTTTGTTGATCGCCTTCAGCTTTAGCGAAACTTGGCTAAAATATTGGCTAACTAAAAATTCAACCACGTAAAGGATGTATTTTGCAATATTTTACGATCTAACATTATTTAGTTCAATTTA
**************************************************.....................................(((((((.(((((...(((((....))))).)))))..........(((((...((((((((((((((........)))))..........))))))))).))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
......AAGGTCGGCGCGGGGCA................................................................................................................................................................................................................................... 17 2 18 2.89 52 36 0 15 0 0 0 1
............................................................................................................................AAAAATTTTGTTGATTTCCTT......................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0
.......AGGTCGGCGCGGGGCAAA................................................................................................................................................................................................................................. 18 2 6 0.50 3 2 0 1 0 0 0 0
......AAGGTCGGCGCGGGGCAAA................................................................................................................................................................................................................................. 19 2 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................TTTAACTTGCAGTAGGTGTA.................................................................................................................................. 20 3 17 0.29 5 0 0 0 5 0 0 0
.............................................................................................................CAGAAGGTGAAGTCAAATTAT........................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0 0
............................................................................................................................AAAAATTTTGTTGAT............................................................................................................... 15 0 13 0.23 3 0 1 0 0 2 0 0
..................................................TACGCAGAGAAGTTAGAGTA.................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 1 0
.......AGGTCGGCGCGGGGCAA.................................................................................................................................................................................................................................. 17 2 20 0.15 3 2 0 1 0 0 0 0
........................................................................................................................................................AGTGACATTTGGCTAAAATAT............................................................................. 21 3 7 0.14 1 0 1 0 0 0 0 0
......AAGGTCGGCGCGGGGCAA.................................................................................................................................................................................................................................. 18 2 8 0.13 1 0 0 1 0 0 0 0
....................................................................................................TTTAGCTTGCAGTAGGTGTA.................................................................................................................................. 20 3 9 0.11 1 0 0 0 1 0 0 0
........................................................................................................................................................................................................AGGATGTGTTCTGCAA.................................. 16 2 20 0.05 1 0 0 0 0 0 0 1
......................................................................................................................................................................AAAATATTGGCTAAG..................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0
.................................................................GGGTGTATTAAGAATAT........................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0

Generated: 04/24/2015 at 10:46 AM