ID:

dsi_18834

 Coordinate:

2r:8436706-8436855 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.4 -11.2 -10.6 -10.4

Flybase annnotation

Antisense to five_prime_UTR [2r_8436643_8436927_-]; Antisense to exon [2r_8436568_8436927_-]

No Repeatable elements found

Sense Strand Reads

TCAAGATGTCATTGGTTGGTTGGGATTAGGATGGTGATGCGGATTCTACGGTAGGGAGTCCTCCGGTTGTTGGACGCCACTTGCGGATGCTAGTAGTCCCTTCCGGCCGGGAATCCTTCCCGAAATCGTACTCCTTCGGTCCCGACTCCTTATACTAGCAATGCTGTGTAGTCCGGACCAGAAATCTGCATTAATCACGTCTGGGAATCTTGTGCGCAAATTAACCTGCGTAAAAAATCGAAATACTAAA
*********************************************************************************(((((.....((...((((........))))...))..)))....))************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.....................................TGCGGATTCTACGGTAGGGAG................................................................................................................................................................................................ 21 0 1 4.00 4 4 0 0 0 0 0 0
..................................................................TTGTTGGACGACACTTGCGGA................................................................................................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0
.....................................TGCGGATTCTACGGTAGGGTTT............................................................................................................................................................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0
....................................................................................................................TTCCCGAAGTCGTACT...................................................................................................................... 16 1 1 2.00 2 0 2 0 0 0 0 0
........................ATTAGGATGGTGATGCGGAT.............................................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0
................................................................................................................................................................ATGCTGTGTAGTCCAGACCAG..................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................TCCCGAAGTCGTACTC..................................................................................................................... 16 1 1 2.00 2 0 2 0 0 0 0 0
............................................................CTCCGGTTGTTGGACGACACT......................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
..........ATTGGTTGGTTGGGATTAGG............................................................................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0
......................................................................TGGACGACACTTGCGGATGCTT.............................................................................................................................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0
.......................GATTAGGATGGTGATGCGGAT.............................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................................GTCCCGAAGTCGTACTC..................................................................................................................... 17 2 9 1.44 13 0 13 0 0 0 0 0
..........................................................................................................................................................................................TGCATTAATCACGTCTGGGAA........................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
....................................ATGCGGATTCTACGGTAGTA.................................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0
.....................................TGCGGATTCTACGGTAGGGAGT............................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................TGGACGACACTTGCGGATGCT............................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................TGCGGATGCTAGTAGTCCC...................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
..............................ATGGTGATGCGGATTCTACGG....................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
................TGGTTGGGATTAGGATGGT....................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
...........................AGGATGGTGATGCGGATTTTA.......................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.....................................TGCGGATTCTACGGTAGGGTT................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0
...............................TGGTGATGCGGATTCTACGG....................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................CCCTTCCGGCCGGGAATCCTTC................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
................TGGTTGGGATTAGGATGGTGTAT................................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
.................GGTTGGGATTAGGATGGTGATT................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGTGTAGAAAAGCGAAATACTAAA 24 3 2 1.00 2 2 0 0 0 0 0 0
..............................................................................................................GAATCCTTCCCGAAATCG.......................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0
................TGGTTGGGATTAGGATGGTG...................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
......TGTCATTGGTTGGTTGGGAT................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0
...............TTGGTTGGGATTAGGATGGT....................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.......................GATTAGGATGGTGATGCGGTT.............................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................TGTTGGACGACACTTGCGGAT.................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.....................................TGCGGATTCTACGGTAGGG.................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................GTTGTTGGACGACACTTGCGGTTT................................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0
...................................................TAGGGAGTCCTCCGGTTGTTG.................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................TGTTGGACGACACTTGCGGAA.................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
.....................................TGCGGATTCTACGGTAGGGTA................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0
.....................................................................TTGGACGACACTTGCGGATGCTA.............................................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
......................................GCGGATTCTACGGTAGGGATTT.............................................................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
...............TTGGTTGGGATTAGGATGGTG...................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
....................TGGGATTAGGATGGTGATGTT................................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
................TGGTTGGGATTAGGATGGTGA..................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................TCCCGAAGTCGTACTCA.................................................................................................................... 17 2 10 1.00 10 0 10 0 0 0 0 0
.......................................CGGATTCTACGGTAGGGATT............................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
...................TTGGGATTAGGATGGTGATAT.................................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................TGTTGGACGACACTTGCGGTA.................................................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0
..AAGATGTCATTGGTTGGTTGG................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
......................................GCGGATTCTACGGTAGGGTT................................................................................................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................ACTCCTTCGGTCCCGACTC...................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................TTCCCGAAGTCGTACTCA.................................................................................................................... 18 2 2 0.50 1 0 1 0 0 0 0 0
.....................................................................TTGGACGACACTTGCGGAT.................................................................................................................................................................. 19 1 2 0.50 1 1 0 0 0 0 0 0
.....................................TGCGGATTCTACGGTAGGGTTTT.............................................................................................................................................................................................. 23 3 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................TCCCGAAGTCGTACT...................................................................................................................... 15 1 4 0.50 2 0 2 0 0 0 0 0
...................................................................................CGGATGCTAGTGGTCAATTCC.................................................................................................................................................. 21 3 2 0.50 1 0 0 0 1 0 0 0
.....................................................................................................................TCCCGAAGTCGTACTCATT.................................................................................................................. 19 2 2 0.50 1 0 1 0 0 0 0 0
.....................................................................................................................TCCCGAAGTCGTACTCAGT.................................................................................................................. 19 3 8 0.50 4 0 4 0 0 0 0 0
..........ATTGGTTGGTTGGGATTATT............................................................................................................................................................................................................................ 20 2 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................................GTCCCGAAGTCGTACT...................................................................................................................... 16 2 20 0.25 5 0 5 0 0 0 0 0
......................................................................................................................CCCGAAGTCGTACTC..................................................................................................................... 15 1 5 0.20 1 0 1 0 0 0 0 0
..........................................................................................................................................................CTAGCAATTCGGTGTAG............................................................................... 17 2 7 0.14 1 0 0 0 0 0 1 0
.............................................CAACGTTAGGGAGTCC............................................................................................................................................................................................. 16 2 17 0.12 2 0 0 0 0 2 0 0
........................................................................................................................................................................................................CTGGGCATCTTGCGCGC................................. 17 2 17 0.12 2 0 0 0 0 2 0 0
.CAAGAGGTCATTGGT.......................................................................................................................................................................................................................................... 15 1 9 0.11 1 0 1 0 0 0 0 0
.........................................................................................................................................................ACTGGAAATGCTGTGTA................................................................................ 17 2 20 0.10 2 0 2 0 0 0 0 0
...................................................................................................................GTTCCCGAAGTCGTACTCA.................................................................................................................... 19 3 11 0.09 1 0 1 0 0 0 0 0
................................................................................................................................................................CTGCTGTGTAGTCCAGA......................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

##########################################################################################################################################################################################################################################################
AGTTCTACAGTAACCAACCAACCCTAATCCTACCACTACGCCTAAGATGCCATCCCTCAGGAGGCCAACAACCTGCGGTGAACGCCTACGATCATCAGGGAAGGCCGGCCCTTAGGAAGGGCTTTAGCATGAGGAAGCCAGGGCTGAGGAATATGATCGTTACGACACATCAGGCCTGGTCTTTAGACGTAATTAGTGCAGACCCTTAGAACACGCGTTTAATTGGACGCATTTTTTAGCTTTATGATTT
**************************************************************************************************************************(((((.....((...((((........))))...))..)))....))********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 O001
Testis
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
................................................................................................................................................................TACGACACATCAGGTCTGGTC..................................................................... 21 1 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTGCAGACCCTTAGAACA..................................... 18 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTACGACACATCAGGTCTGGT...................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TCAGGGAAGGCCGGCCCTTA........................................................................................................................................ 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..........................ATCCTACCACTACGCCTAAGA........................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CATCAGGCCTGGTCTTTA................................................................. 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AGGGCTGAGGAATATGATCGTT......................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................CAGGCCTGGTCTTTAGACGTA........................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................AACAACCTGCGGTGAACGCCTA.................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................ATCCCTCAGGAGGCCAACAAC.................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GAGGAATATGATCGTTACGACACAT................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................GGAGGCCAGGGCTGAGGA.................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AGGGCTGAGGAATATGATCGT.......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................TTACCACTACGCCTAAGATGCC....................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................CTAATCCTACCACTACGCCTA.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................ACATCAGGCCTGGTCTTTA................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................TACGATCATCAGGGAAGGCCGGCCCTTA........................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................TACGACACATCAGGCCTGGT...................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................ATCAGGCCTGGTCTTTAGACGTA........................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTTACGACACATCAGGCCT......................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................AGGAGGCCAACAACCTG............................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................ATCAGGCCTGGTCTTTAG................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................GGGAAGGCCGGCCCTTAGGAA.................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................CCCTCAGGAGGCCAACAA................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................TCATCAGGGAAGGCCGGCCCTTA........................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................CCCTCAGGAGGCCAACAACC................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................AATAGGAAGGGCTTTAGCATGA...................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AGCATGAGGAAGCCAGGGCTG........................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTTACGACACATCAGGCCTGGTCTT................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................CAACCTGCGGTGAACGCCTAC................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TGGGCTGAGGAATATGATCGT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................ACACATCAGGCCTGGTCTTTAG................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.................................................CCATCCCTCAGGAGGCCAACAACC................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................GCCTACGATCATCAGGGAAGGCC................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GATCGTCACGACACATCAGGTCTGGT...................................................................... 26 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................ACCTGCTGTGAACGCCTACGA............................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AGACGTAATTAGTGCAGACCCTTAGA........................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................CTTTAGACGTAATTAGTGCAGAC............................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................AGGCCAGGGCTGAGGAATAT................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................CACTACGCCTAAGATGCCATC.................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GAGGAATCCAGGGCT......................................................................................................... 15 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................TTTGGCTGAGGAATATGATCG........................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AGGGAGGGCCTTAGCTTGAG..................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
................ACCAACTCTGATCCTGCC........................................................................................................................................................................................................................ 18 3 20 0.15 3 0 0 0 0 0 0 0 2 0 0 0 1
..................................................................................................................................GCGGAATCCAGGGCTGA....................................................................................................... 17 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................GGAATCCAGGGCTGAA...................................................................................................... 16 2 19 0.11 2 0 0 0 0 0 0 0 0 0 0 1 1
...................................................................................................................................AGGAAGCTAGGGCTG........................................................................................................ 15 1 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................GGACGCATTTTTTTG........... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................GGAATCCAGGGCTGAGTG.................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:8436656-8436905 + dsi_18834 TCAAGATGTCATTGGTTGGTTGGGA-TTAGG--ATGGTGATGC----GG-----A---TTCTACGGTAGGGAGTCCTCCGG-TTGTTGGA-CGCCACTTGCGGATGCTAGTAG---TCC-CTTCCGGCCGGGAATCCTTCCCGAAATCGTACTCCTTCGGTCCCGACTCCTTATACTAGCAATGCTGTGTAGTCCGGACCAGAAA-TCTGC-ATTAATCACGTCTG-GGAATCTTGTGCGCAAATTAACCTGCGTAAAAA---------------ATC-GAAATACTAAA-
droSec2 scaffold_1:5283219-5283468 + TCAAGATGTCATTGGTTGCTTTGGA-TTAGG--ATGGTGATGC----GG-----A---TTCTACGGTAGGGAGTCCTCCGG-TTGTTGGA-CGCCACTTGCGGATGCTAGTAG---TCC-CTTCCGGCCGGGAATCCTTCCCGAAATCGTACTCCTCCGGTCCCGACTACTTATACTAGCAATGCTGTGTAATCCAGACCAGAAA-TCTGC-ATTAATCACGTCTG-GGAATCTTGTGCGCAAATTAACCTGCGTAAAAA---------------ATC-GAAATACTAAA-
dm3 chr2R:7731472-7731721 + TCAAGATGTCATTGGTTTGTTGGGA-TTAGG--ATGGTGATGC----GG-----A---TTCTACAGTTGGGGGTCCTCCGG-TTGCTGGA-CGTCACTTGCGAATGCTAGTAG---TCC-CTACCGGACGGGATTCCTTCCCGAAATCTTACTCCTCTGGTCCCGACTCCTTATACCAGCAATGCTGTGTAGTCCAGACCAGAAA-TCAGC-ATTAATCACGTCTG-GGAATCTTGTGCGCAAATTAACCTGCGTAAAAA---------------ATC-GAAATACCAAA-
droEre2 scaffold_4845:18063115-18063353 - TCAAGAGGTCATTGGTTGATTGGTT-CTACA--ATGGTGATGC----GG-----A---TTCCTCGGTAGGGAAACCTCCGG-TTATTGGA-CGCCACTTGCGGATGCTAGTAG---TCCCCTTCCGGACGGGAATCCTTCCCGAAATCGTACTCCT------------CCTAGTACTAGCAATACAGTATAGTCCAGACCAGAAA-TTAGC-ATTAATCACGTCTG-TGAATCTTGTGCGCAAATTAACCTGAATAAAAA---------------ATC-TAAATACTGAA-
droYak3 2R:9219906-9220167 - TCAAGAGGTCATTGGTTGGTTGGGTTATAGG--ATGGTAATGC----GG-----A---ATCTTCGGAAGGGAGACCTCCGG-TTGCTGGA-CGCCACTTGCGGATGCTAGTAG---TCCCCTTCCGGCCGGGAATCCTTCCCGATCTCGTACTTCTCCGGTTCCGACTCCAAGTACTAGCTATACAGTATAGTCCAGACCACAAA-TCAGC-ATTAATCACGTCCG-GGAATCTTGTGCGCAAATTAACCTGAGTAAATACTGCGTAAAA-----ATC-GAAATACTGAA-
droEug1 scf7180000409462:753232-753462 - TCAAGAGGTCATCGATGT-------TATGGT--CTGATAATACAGGTGTATTAGAACCTAT---------------TTCGG-TGGCAGGAC-------------TGCTTGTTGGCCTCC-CTTCCGCCCGGGAATCT-TGCCGGAAACGTGATTATCCGGTGCCTAATCGAAGAACTGACACTACTTTAAAATCCAGACCAGAAA-TCAAC-ATTAATCACGTCTG-GAAATCTTGTGCGCAATTTAGTCTGCGTAAAAA---------------ATA-TAAATACTAAA-
droBia1 scf7180000302292:518391-518642 + TCAAGAGGTCATCGGTGT--TGG-----GGG--TTGGTGATTCAGGTGAATTGGAACCTTCTTCGGTAG--AGATCTCCGGGTTGCAGGACCACCACC------TGCTCGCAG---TCGCCTTCCGACCGGGAATCCTTTCCGGAATCGTAGTCCTCCGGTTCCGACTCCAAGTACTGGCACTCCGGCAAGGCCCAGACCAGAAA-TCAGC-ATTAATCACGTCTG-GAAATCTTGTGCGCAAATTAATCTGCGTAAAAA---------A-----ATA-TAAATACTAAA-
droTak1 scf7180000415820:80772-80999 + TCAAGAGGTCATCGGAGT-------TATGGGAGATGGTGGTTCAGGTGGA--------ATT---------------------TCGCAGGACCACCACC------TGTTCGTAG---CCTCCTTCCGAACGGGAATCCTCTCCAGAATCGTTGTCCTCCGGTTCCGACTCCAAGTACTGGCACTCCGGTAGAGCCCAGACCAGAAA-TCAAC-ATTAATCACGTCTG-CAAATCTTGTGCGCAAATTAATCTGCGTAAAAA---------A-----ATA-TAAATACTAAAA
droEle1 scf7180000491214:3222487-3222746 + TTAAGAGTTCATCGGAGT-------TTAAGG--ATGTTAAGTCAGGCGGATGG---------------GAGAGATCTACGGTTTGCAGGACCACCGCCTGCCGCTGCTCGTGC---TCCTTTTCCGGCACAGAATCCTCCCCAGAATCGTAGTCCTTCGGTTCCAACTCCAAATACTGGAACTACGTGAAAGCCCAGGCCAGAAA-TAAGC-ATTAATCACGTCTGAGAAATCGTGTCCGCAAAATAACCTGCGTAAAAATAAATTAAACATATACTA-AAAATACTACA-
droRho1 scf7180000779932:127804-128076 + TTAAGAGTTCATTGGAGT-------TTCAAG--AGAGTAAATCAGGTGGATTGGAACCTCCTTCGGCGGAGAGATCTGCGG-TTGCAGGACCACCACCTGCGGCTGTTCGTCC---TCCTGTTCCGACAGAGAATCCTCTCCAGAATCTTAGTCCTCCGGTTCCGACTCCAATTACTGGCGCTACGTTAAGGCCTAGACCAGAAA-TCAGC-ATTAATCACGTCTG-GAAATCTTGTGCGCAAATTAACCTGCGTAAAAATAACTTAAACATATACTA-AAAATACTAGA-
droFic1 scf7180000453948:853800-853972 + TTAAGAGTTCATCGAAACGATG-----------------AAG----------------------------------------------------------------------------------CGGTCGAGAATCCTT-CAGGAATTGTTCTCCTCCGGCTCCGACTCCAAAATCTGGCCCAACTTTTGAGCCCCGGCCGGAAAATCTCCGGTTAATCACGTCTG-GAAATCTTTTG--CAAATTATTCTGCGTACAAA---------T-----ATAAAAAATACTAAA-
droKik1 scf7180000302386:296927-296968 + TCTGGTCTTCACCAGTTCATTGGAG-ATAGG--TTAGTCTTGA----GG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCAAGATGTCATTGGTTGGTTGGGA-TTAGG--ATGGTGATGC----GG-----A---TTCTACGGTAGGGAGTCCTCCGG-TTGTTGGA-CGCCACTTGCGGATGCTAGTAG---TCC-CTTCCGGCCGGGAATCCTTCCCGAAATCGTACTCCTTCGGTCCCGACTCCTTATACTAGCAATGCTGTGTAGTCCGGACCAGAAA-TCTGC-ATTAATCACGTCTG-GGAATCTTGTGCGCAAATTAACCTGCGTAAAAA---------------ATC-GAAATACTAAA-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................TGC----GG-----A---TTCTACGGTAGGGAG..........................................................................................................................................................................................................................2114.00400000000000004000
........................A-TTAGG--ATGGTGATGC----GG-----A---T........................................................................................................................................................................................................................................2012.00200000000000002000
..........ATTGGTTGGTTGGGA-TTAGG--..................................................................................................................................................................................................................................................................2012.00200000000000002000
.......................GA-TTAGG--ATGGTGATGC----GG-----A---T........................................................................................................................................................................................................................................2112.00200000000000002000
................................................................................................................................................................................................................TGC-ATTAATCACGTCTG-GGAA............................................................2111.00100001000000000000
.......................................ATGC----GG-----A---TTCTACGGTAGTA............................................................................................................................................................................................................................2011.00100000000000001000
........................................TGC----GG-----A---TTCTACGGTAGGGAGT.........................................................................................................................................................................................................................2211.00100000000000001000
..................................................................................................TGCGGATGCTAGTAG---TCC-C..........................................................................................................................................................................1911.00100001000000000000
.................................ATGGTGATGC----GG-----A---TTCTACGG.................................................................................................................................................................................................................................2111.00100000000000001000
................TGGTTGGGA-TTAGG--ATGGT.............................................................................................................................................................................................................................................................1911.00100000000000001000
........................................TGC----GG-----A---TTCTACGGTAGGGTT..........................................................................................................................................................................................................................2111.00100000000000001000
..................................TGGTGATGC----GG-----A---TTCTACGG.................................................................................................................................................................................................................................2011.00100000000000001000
.....................................................................................................................CC-CTTCCGGCCGGGAATCCTTC.......................................................................................................................................................2211.00100001000000000000
................TGGTTGGGA-TTAGG--ATGGTGTAT.........................................................................................................................................................................................................................................................2311.00100000000000001000
.................GGTTGGGA-TTAGG--ATGGTGATT.........................................................................................................................................................................................................................................................2211.00100000000000001000
...................................................................................................................................GAATCCTTCCCGAAATCG..............................................................................................................................................1811.00100001000000000000
................TGGTTGGGA-TTAGG--ATGGTG............................................................................................................................................................................................................................................................2011.00100000000000001000
......TGTCATTGGTTGGTTGGGA-T........................................................................................................................................................................................................................................................................2011.00100000000000001000
...............TTGGTTGGGA-TTAGG--ATGGT.............................................................................................................................................................................................................................................................2011.00100000000000001000
........................................TGC----GG-----A---TTCTACGGTAGGG............................................................................................................................................................................................................................1911.00100000000000001000
..................................................................TAGGGAGTCCTCCGG-TTGTTG...........................................................................................................................................................................................................2111.00100000000000001000
........................................TGC----GG-----A---TTCTACGGTAGGGTA..........................................................................................................................................................................................................................2111.00100000000000001000
...............TTGGTTGGGA-TTAGG--ATGGTG............................................................................................................................................................................................................................................................2111.00100000000000001000
....................TGGGA-TTAGG--ATGGTGATGT----T...................................................................................................................................................................................................................................................2111.00100000000000001000
................TGGTTGGGA-TTAGG--ATGGTGA...........................................................................................................................................................................................................................................................2111.00100000000000001000
...................TTGGGA-TTAGG--ATGGTGATAT----....................................................................................................................................................................................................................................................2111.00100000000000001000
..AAGATGTCATTGGTTGGTTGG............................................................................................................................................................................................................................................................................2111.00100000000000001000
.........................................GC----GG-----A---TTCTACGGTAGGGTT..........................................................................................................................................................................................................................2011.00100000000000001000
......................................................................................................................................................ACTCCTTCGGTCCCGACTC..........................................................................................................................1911.00100001000000000000
..........ATTGGTTGGTTGGGA-TTATT--..................................................................................................................................................................................................................................................................2030.33100000000000001000
droSec2
TCAAGATGTCATTGGTTGCTTTGGA-TTAGG--ATGGTGATGC----GG-----A---TTCTACGGTAGGGAGTCCTCCGG-TTGTTGGA-CGCCACTTGCGGATGCTAGTAG---TCC-CTTCCGGCCGGGAATCCTTCCCGAAATCGTACTCCTCCGGTCCCGACTACTTATACTAGCAATGCTGTGTAATCCAGACCAGAAA-TCTGC-ATTAATCACGTCTG-GGAATCTTGTGCGCAAATTAACCTGCGTAAAAA---------------ATC-GAAATACTAAA-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................A---TTCTACGGTAGGGAGTCCTC.....................................................................................................................................................................................................................2111.0010100
dm3
TCAAGATGTCATTGGTTTGTTGGGA-TTAGG--ATGGTGATGC----GG-----A---TTCTACAGTTGGGGGTCCTCCGG-TTGCTGGA-CGTCACTTGCGAATGCTAGTAG---TCC-CTACCGGACGGGATTCCTTCCCGAAATCTTACTCCTCTGGTCCCGACTCCTTATACCAGCAATGCTGTGTAGTCCAGACCAGAAA-TCAGC-ATTAATCACGTCTG-GGAATCTTGTGCGCAAATTAACCTGCGTAAAAA---------------ATC-GAAATACCAAA-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..AAGATGTCATTGGTTTGTTGG............................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100100000000
..........................................................................CCTCCGG-TTGCTGGA-CGTCACC.................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TTGTTGGGA-TTAGG--ATGGTGA...........................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................TTGGGA-TTAGG--ATGGTGATGC----....................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
..............................................................................................................TAG---TCC-CTACCGGACGGGATG............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................TGCTAGTAG---TCC-CTACCGGACGGGTG.............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTTGTTGGGA-TTAGG--ATGGTG............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CATTGGTTTGTTGGGA-TTAGG--T.................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..................................................................................TTGCTGGA-CGTCACTTGCGAA...........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................G-----A---TTCTACAGTTGGGGGTCCT......................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................ATTAATCACGTCTG-GGAATCT.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................G-TTGCTGGA-CGTCACTTGCG.............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........ATTGGTTTGTTGGGA-TTAGG--ATGG..............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................................................................................................................................................................TCTG-GGAATCTTGTGCGCAAATT.............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GTGATGC----GG-----A---TTCTACAGTTGGGGG..........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................CAGTTGGGGGTCCTCCGG-TTGC.............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AA-TCAGC-ATTAATCACGTCTG-................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TGC----GG-----A---TTCTACAGTTGGGGGA.........................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....GATGTCATTGGTTTGTTGGGA-.........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..................................................................................................TGCGAATGCTAGTAG---TCC-CTACCGGACGG................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CATTGGTTTGTTGGGA-TTAGG--ATGGT.............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
............................................................................TCCGG-TTGCTGGA-CGTCACTT................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................CGG-TTGCTGGA-CGTCACTTGC..............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GTTGGGA-TTAGG--ATGGTGATG.........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TTGTTGGGA-TTAGG--ATGGTGATG.........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................G-TTGCTGGA-CGTCACTTGT..............................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................CAGTTGGGGGTCCTCCGG-TTG..............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................TTGTTGGGA-TTAGG--ATGGTGATGC----....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..................................................................................TTGCTGGA-CGTCACTTGCGAATGCTAG.....................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................G-TTGCTGGA-CGTCACTTGCGT............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................................................................................TTAATCACGTCTG-GGAATCTTGTGC....................................................2511.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCAAGAGGTCATTGGTTGATTGGTT-CTACA--ATGGTGATGC----GG-----A---TTCCTCGGTAGGGAAACCTCCGG-TTATTGGA-CGCCACTTGCGGATGCTAGTAG---TCCCCTTCCGGACGGGAATCCTTCCCGAAATCGTACTCCT------------CCTAGTACTAGCAATACAGTATAGTCCAGACCAGAAA-TTAGC-ATTAATCACGTCTG-TGAATCTTGTGCGCAAATTAACCTGAATAAAAA---------------ATC-TAAATACTGAA-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TCAAGAGGTCATTGGTTGGTTGGGTTATAGG--ATGGTAATGC----GG-----A---ATCTTCGGAAGGGAGACCTCCGG-TTGCTGGA-CGCCACTTGCGGATGCTAGTAG---TCCCCTTCCGGCCGGGAATCCTTCCCGATCTCGTACTTCTCCGGTTCCGACTCCAAGTACTAGCTATACAGTATAGTCCAGACCACAAA-TCAGC-ATTAATCACGTCCG-GGAATCTTGTGCGCAAATTAACCTGAGTAAATACTGCGTAAAA-----ATC-GAAATACTGAA-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TCAAGAGGTCATCGATGT-------TATGGT--CTGATAATACAGGTGTATTAGAACCTAT---------------TTCGG-TGGCAGGAC-------------TGCTTGTTGGCCTCC-CTTCCGCCCGGGAATCT-TGCCGGAAACGTGATTATCCGGTGCCTAATCGAAGAACTGACACTACTTTAAAATCCAGACCAGAAA-TCAAC-ATTAATCACGTCTG-GAAATCTTGTGCGCAATTTAGTCTGCGTAAAAA---------------ATA-TAAATACTAAA-SizeHit CountTotal NormTotal
No Reads
droBia1
TCAAGAGGTCATCGGTGT--TGG-----GGG--TTGGTGATTCAGGTGAATTGGAACCTTCTTCGGTAG--AGATCTCCGGGTTGCAGGACCACCACC------TGCTCGCAG---TCGCCTTCCGACCGGGAATCCTTTCCGGAATCGTAGTCCTCCGGTTCCGACTCCAAGTACTGGCACTCCGGCAAGGCCCAGACCAGAAA-TCAGC-ATTAATCACGTCTG-GAAATCTTGTGCGCAAATTAATCTGCGTAAAAA---------A-----ATA-TAAATACTAAA-SizeHit CountTotal NormTotal
No Reads
droTak1
TCAAGAGGTCATCGGAGT-------TATGGGAGATGGTGGTTCAGGTGGA--------ATT---------------------TCGCAGGACCACCACC------TGTTCGTAG---CCTCCTTCCGAACGGGAATCCTCTCCAGAATCGTTGTCCTCCGGTTCCGACTCCAAGTACTGGCACTCCGGTAGAGCCCAGACCAGAAA-TCAAC-ATTAATCACGTCTG-CAAATCTTGTGCGCAAATTAATCTGCGTAAAAA---------A-----ATA-TAAATACTAAAASizeHit CountTotal NormTotal
No Reads
droEle1
TTAAGAGTTCATCGGAGT-------TTAAGG--ATGTTAAGTCAGGCGGATGG---------------GAGAGATCTACGGTTTGCAGGACCACCGCCTGCCGCTGCTCGTGC---TCCTTTTCCGGCACAGAATCCTCCCCAGAATCGTAGTCCTTCGGTTCCAACTCCAAATACTGGAACTACGTGAAAGCCCAGGCCAGAAA-TAAGC-ATTAATCACGTCTGAGAAATCGTGTCCGCAAAATAACCTGCGTAAAAATAAATTAAACATATACTA-AAAATACTACA-SizeHit CountTotal NormTotal
No Reads
droRho1
TTAAGAGTTCATTGGAGT-------TTCAAG--AGAGTAAATCAGGTGGATTGGAACCTCCTTCGGCGGAGAGATCTGCGG-TTGCAGGACCACCACCTGCGGCTGTTCGTCC---TCCTGTTCCGACAGAGAATCCTCTCCAGAATCTTAGTCCTCCGGTTCCGACTCCAATTACTGGCGCTACGTTAAGGCCTAGACCAGAAA-TCAGC-ATTAATCACGTCTG-GAAATCTTGTGCGCAAATTAACCTGCGTAAAAATAACTTAAACATATACTA-AAAATACTAGA-SizeHit CountTotal NormTotal
No Reads
droFic1
TTAAGAGTTCATCGAAACGATG-----------------AAG----------------------------------------------------------------------------------CGGTCGAGAATCCTT-CAGGAATTGTTCTCCTCCGGCTCCGACTCCAAAATCTGGCCCAACTTTTGAGCCCCGGCCGGAAAATCTCCGGTTAATCACGTCTG-GAAATCTTTTG--CAAATTATTCTGCGTACAAA---------T-----ATAAAAAATACTAAA-SizeHit CountTotal NormTotal
No Reads
droKik1
TCTGGTCTTCACCAGTTCATTGGAG-ATAGG--TTAGTCTTGA----GG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/19/2015 at 12:28 PM