dsi_18833

exon [2l_16290941_16291503_-]; CDS [2l_16290941_16291503_-]; exon [2l_16290770_16290883_-]; CDS [2l_16290770_16290883_-]; intron [2l_16290884_16290940_-]

##################################################---------------------------------------------------------################################################## GCCTGCTTCGACATCGGAGAGTATGTGCGCCACTATCCCCGCGGCAAGCAGTAAGTACAGATTTAATATGTTACATACAATTCTATTAACAAATCCTATTTGTTTAGCGTCTTGGAACAATTGGGAGGCAAGCAGATCGTGATGCAGCATCTTGGCC ************************************************......((((((......(((((.(((......))))))))......))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	GSM343915 embryo	M053 female body	SRR902009 testis	M023 head	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
..................................................................................................................GAACAATTGGAGGGCAAGC........................	19	2	8	5.75	46	1	32	0	0	0	13	0	0	0
..................................................................................................................................AGCAGATCGTGATGCAGC.........	18	0	1	4.00	4	2	2	0	0	0	0	0	0	0
..............................................................................................................................GGCAAGCAGATCGTGATGCAGC.........	22	0	1	4.00	4	3	1	0	0	0	0	0	0	0
.................................................................................................................................AAGCAGATCGTGATGCAGC.........	19	0	1	4.00	4	2	2	0	0	0	0	0	0	0
GCCTGCTTCGACATCGGA...........................................................................................................................................	18	0	1	2.00	2	1	1	0	0	0	0	0	0	0
................................................................................................................................CAAGCAGATCGTGATGCAGC.........	20	0	1	2.00	2	2	0	0	0	0	0	0	0	0
............ATCGGAGAGTATGTGCGCC..............................................................................................................................	19	0	1	2.00	2	1	1	0	0	0	0	0	0	0
...............................................................................................................TTGGAACAATTGGGAGGCAAGCAG......................	24	0	1	2.00	2	0	0	0	0	2	0	0	0	0
............................................................................................................GTCTTGGAACAATTGGGAGGC............................	21	0	1	2.00	2	2	0	0	0	0	0	0	0	0
............ATCGGAGAGTATGTGCGCCACT...........................................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0	0	0
...........CATCGGAGAGTATGTGCGCCAC............................................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0	0	0
........CGACATCGGAGAGTATGT...................................................................................................................................	18	0	1	2.00	2	0	2	0	0	0	0	0	0	0
......................................................................................................................AATTGGGAGGCAAGCAGATCGT.................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.........................................................................................................CACGTCTTGGAACAATTGGG................................	20	2	1	1.00	1	0	0	1	0	0	0	0	0	0
..............................................................................................................................GGCAAGCAGATCGTGATGCA...........	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0
....................................................................................................................ACAATTGGGAGGCAAGCAGATCGT.................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0
...........CATCGGAGAGTATGTGCGC...............................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.......TCGACATCGGAGAGTATGT...................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..........ACATCGGAGAGTATGTGCGCCACTA..........................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	0	1	0	0
..................................................................................................................................AGCAGATCGTGATGCAGCATCT.....	22	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...........CATCGGAGAGTATGTGCGCCACT...........................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0
....................GTATGTGCGCCACTATCCCCGCGG.................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0	0
..............................................................................................................................GGCAAGCAGATCGTGATGCAGG.........	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0
......................ATGTGCGCCACTATCCCCGTGG.................................................................................................................	22	1	1	1.00	1	0	1	0	0	0	0	0	0	0
................................CTATCCCCGCGGCAAGCAC..........................................................................................................	19	1	1	1.00	1	0	0	1	0	0	0	0	0	0
..................................................................................................................GAACAATTGGGAGGCAAGCAGATCGT.................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0
...............................................................................................................................GCAAGCAGATCGTGATGC............	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.......................................................................................................................ATTGGGAGGCAAGCAGATC...................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0
GCCTGCTTCGACATCGGAGA.........................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0
.....................................................................................................................................AGATCGTGATGCAGCATCTT....	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.................................................................................................................GGAACAATTGGAGGGCAAGC........................	20	2	6	0.83	5	0	4	0	0	0	1	0	0	0
..................................................................................................................GAACAATTGGGGGGCAAGT........................	19	2	8	0.13	1	0	1	0	0	0	0	0	0	0
..................................................................................................................GAACAATTGGTGGGCAAG.........................	18	2	15	0.07	1	0	1	0	0	0	0	0	0	0
...................................................................................................TTGTTTAGCGTCGTGTA.........................................	17	2	15	0.07	1	0	0	0	0	0	0	0	1	0
.....................................................................................TGAACAAATGCTATTTTTTTA...................................................	21	3	20	0.05	1	0	0	0	0	0	0	0	1	0
.................................TCTCCCCGCGGCAAGA............................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	1
........................................................................................................................TTGGGAGGCAAACAGGTCGA.................	20	3	20	0.05	1	0	0	1	0	0	0	0	0	0

CGGACGAAGCTGTAGCCTCTCATACACGCGGTGATAGGGGCGCCGTTCGTCATTCATGTCTAAATTATACAATGTATGTTAAGATAATTGTTTAGGATAAACAAATCGCAGAACCTTGTTAACCCTCCGTTCGTCTAGCACTACGTCGTAGAACCGG ************************************************......((((((......(((((.(((......))))))))......))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
.............................................................................................................AGAACCTTGTTAACCCTA..............................	18	1	1	1.00	1	1	0	0	0
....CGAAGCTACAGCGTCTCATAC....................................................................................................................................	21	3	3	0.33	1	0	0	1	0
.GGTCGAAGGTGTGGCCTCTCA.......................................................................................................................................	21	3	3	0.33	1	0	1	0	0
..................................CAGGGGCGCCGTTCG............................................................................................................	15	1	5	0.20	1	0	1	0	0
.......................GCACGCGGTGATACGGGC....................................................................................................................	18	2	7	0.14	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:16290834-16290990 -	dsi_18833	GCCTGCTTCGACATCGGAGAGTATGTGCGCCACTATCCCCGCGGCAAGCAGTAAGTAC----A-----GATT--------------------------------------------------------TAA---------------TATGTT-------------AC------------A----TACAATTC--TATTAACAAATCCT-----ATTTGTTTAGCGTCTTGGAACAATTGGGAGGCAAGCAGATCGTGATGCAGCATCTTGGCC
droSec2	scaffold_7:370917-371071 -		GCCTGCTTCGACATCGGAGAGTATGTGCGCCACTATCCCCGCGGCAAGCAGTAAGTAC----A-----GATT--------------------------------------------------------TAA-----------------TGTT-------------AC------------A----TACAATTC--TATTAACAAATCCT-----ATTTGTTTAGCGTCTTGGAACAATTGGGAGGTAAGCAGATCGTGATGCAGCATCTTGGCC
dm3	chr2L:16724122-16724281 -		GCCTGCTTCGACATCGGGGAGTATGTGCGCCACTATCCCCGCGGCAAGCAGTAAGTTT----A-----GATT--------------------------------------------------------TTAT-A-----------CTATGTT-------------AC------------A----TACAATCC--AATTACCAAATCAT-----TTTCTTCTAGCGTCTTGGAACAACTCGGAGGCAAGCAGATCGTGATGCAGCATCTTGGCC
droEre2	scaffold_4845:19795682-19795846 -		GCCTGCTTCGACATCGGAGAGTATGTGCGTCACTATCTCCGCGGCAAGCAGTGAGTAC----AATATAGATT--------------------------------------------------------TAAA-G-----------TCATATT-------------AC------------A----TACAATCA--TATTATTAAATCTT-----ATTTCCGTAGCGTCTTGGAACAACTGGGAGGCAAGCAGATCGTGATGCAGCATCTTGGCC
droYak3	2R:4378724-4378888 +		GCCTGCTTCGACATCGGAGAGTATGTGCGTCACTATCTACGCGGCAAGCAGTAAGTAT----AATATAGATT--------------------------------------------------------TAAA-G-----------TCATGTT-------------AC------------A----TAATATCA--TATTCATAAATCTT-----ATTTCCCTAGCGTCCTGGAACAACTGGGAGGCAAGCAGATCGTAATGCAGCATCTTGGCC
droEug1	scf7180000408961:298875-299069 -		GCCTGCTTCGACATCGGAGAGTATGTCCGTCACTATCCCCGCGGCAAGCAGTAAGTAT----A---------TAGTACTCGATGCTT--AAATGTGCTGA---GCC--------AGCGAGAACCC-ATTTATCT-----------------A-------------AG---CT-------A----CAACACCA--CATTAATCATACTC-----TCTTCCTTAGTGTGCTGGAACAGCTTGGTGGAAAGCAGATCGTGATGCAGCATCTGGGTC
droBia1	scf7180000301468:888662-888864 -		GCCTGCTTTGACATCGGAGAGTATGTGCGTCACTACCCCCGCGGCAAGCAGTGAGTAT----A---------TAGAAT-AGATGCAGAG-AATG-------GTGCCCAAAACATAGAGGGAACCA-TTTGAACT-----------TTGTAGT-------------AC------------T----TAGCACCT--TATTAATAAACCTC-----TTTTCCTCAGTGTGCTGGAGCAGCTGGGTGGCAAACAGATCGTGATGCAGCACCTGGGAC
droTak1	scf7180000415914:451100-451260 -		GCCTGCTTTGACATCGGAGAGTATGTGCGTCACTATCCCCGCGGCAAGCAGTGAGTAT----A-----TATT--------------------------------------------------------TTATTT-----------TATTATT-------------AA------------A----AAACACCT--TAATAATAAACTCC-----TGTTTCTTAGTGTGCTGGAGCAGCTGGGCGGCAAACAGATCGTGATGCAGCATCTGGGAC
droEle1	scf7180000490579:620902-620994 +		TCTAAT---------------------------------------------------------------------------------------------------------------------------------------------ACACT---------------------------AT-----ACATTA--CATTTCTAAATCTT-----TATTCCTTAGTGTCTTGGAGCAACTGGGTGGCAAACAGATCGTAATGCAGCATTTGGGTC
droRho1	scf7180000768553:39612-39689 -		GCCTGCTTCGACATCGGAGAATATGTGCGTCACTATCCCCGCGGCAAGCAGTGAGTAT----A---------AACTGT-AGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTAAAC
droFic1	scf7180000454078:650302-650468 -		GCCTGCTTTGACATCGGAGAGTACGTGCGCCACTATCCTCGCGGCAAGCAGTGAGTAT----A---------CAGTAT-AGT-----------TATCTGAAATACCCAC-----------------------------------------------------------TAT--------------AGTAAAC--TTCTAACA-AACAT-----TTTATTTTAGTGTGCTGGAGCAGCTGGGAGGCAAACAGATCGTGATGCAGCATCTGGGCC
droKik1	scf7180000302643:779622-779786 +		GCCTGCTTTGATATTGGAGAGTATGTGCGTCACTATCCCCGCGGCAAGCAGTGAGTAT----A---------CAAGG------------AGATA-------ATTCCCAA-----------------------------------------------------------AAAAACAAACCTT-----A-------ATTTAACTTTCTTT-----TATTCCTCAGTGTCCTGGAGCAGCTGGGTGGCAAGCAGATCGTGATGCAGCATTTGGGCC
droAna3	scaffold_12943:3938917-3939076 +		GCCTGCTTCGATATCGGAGAGTATGTGCGTCACTATCCTCGCGGCAAGCAGTAAGTAT----TATT-----T--------------------------------------------------------CTGA-T-----------AGAAGTT-------------GG------------A----TGAAATCTGTTATTAACAC--TTC-----CCACTTGCAGTGTCCTGGAACAGCTGGGTGGCAAGCAGATTGTGATGCAACATCTGGGCC
droBip1	scf7180000395973:156443-156610 +		GCCTGCTTTGACATTGGAGAGTATGTGCGTCATTATCCCCGCGGCAAGCAGTAAGTTTTCATA---------TACTG------------GGATGAACTGG------------------------------------------------------------------GATGAAGAGACT-CTCAACCACACCT------------CTTC-----TCAATTATAGTGTCCTGGAACAGCTGGGTGGCAAACAGATTGTAATGCAACATCTGGGCC
dp5	4_group3:3058252-3058411 +		GCCTGCTTCGATATTGGAGAGTATGTGCGTCACTATCCCCGCGGCAAACAGTAAGCTC----TAAATA---------------------------------------------CATT---CTCAA-TT-----------------------TGTGCTCTCATCTT-----------------AATC---------------GGATCTC-----TCGTTTCCAGTGTCCTGGAGCAATTGGGCGGCAAACAGATTGTGATGCAGCATCTGGGCC
droPer2	scaffold_1:4544975-4545134 +		GCCTGCTTCGATATTGGAGAGTATGTGCGTCACTATCCCCGCGGCAAACAGTAAGCTC----AAAATA---------------------------------------------CATT---CTCTA-TT-----------------------TGTGCTCTCATCTT-----------------AATC---------------GGATCTC-----TCGTTTCCAGTGTCCTGGAGCAATTGGGCGGCAAACAGATTGTGATGCAGCATCTGGGCC
droWil2	scf2_1100000004521:1784565-1784762 +		GCCTGCTTTGATATTGGAGAGTATGTGCGTCATTATCCACGTGGCAAGCAGTGAGTAT----C---------TGGAAT-TTTTTTTAAG-GATA-------A-----GAAGCATATT---CTTCATTT-----------------------TGAACTCCCATTTT-----------------GA---CACTTGTTGCTGAAAA--TTTTCAATTTTCTTACAGTGTTTTGGAACAACTTGGTGGCAAGCAGATTGTAATGCAACATTTGGGTC
droVir3	scaffold_12963:6535865-6536025 -		GCCTGTTTCGATATTGGAGAGTATGTGCGTCACTATCCACGCGGCAAGCAGTGAGTCAA---ACTATC----GAGCAC-----------------------------------------------------A-GCGCCTTGCTGCCCATATT-------------AC------------A----TCGA--------------AATC--------TCTTTATAGTGTGCTGGAACAGCTGGGCGGCAAACAGATTGTGATGCAGCATTTGGGCC
droMoj3	scaffold_6500:25690376-25690538 -		GCCTGTTTCGATATTGGAGAGTATGTGCGTCATTATCCACGTGGCAAGCAGTAAGTGAAT--A----AGATC--------------------------------------------------------TGGG-A-----------CCTGTCT-------------GC------------C----TGGCTCCT--ATCTAATATGCCTT-----TGCTTCACAGTGTGCTGGAGCAGTTGGGTGGCAAACAGATTGTTATGCAGCATCTGGGTC
droGri2	scaffold_15252:9752874-9753035 -		GCCTGTTTCGATATTGGAGAGTATGTGCGTCATTATCCTCGCGGCAAGCAGTAAGTCAAC--G-A----ATTTGGCAC-----------------------------------------------------A-GTCCTCTTCT------------------------------------------GGTTTCT--TTTCATCT-TGCAT-----TTGCTTGTAGTGTCCTGGAACAGCTGGGCGGCAAACAGATTGTCATGCAGCATTTGGGCC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCCTGCTTCGACATCGGAGAGTATGTGCGCCACTATCCCCGCGGCAAGCAGTAAGTAC----A-----GATT--------------------------------------------------------TAA---------------TATGTT-------------AC------------A----TACAATTC--TATTAACAAATCCT-----ATTTGTTTAGCGTCTTGGAACAATTGGGAGGCAAGCAGATCGTGATGCAGCATCTTGGCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................AGCAGATCGTGATGCAGC.........	18	1	4.00	4	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GGCAAGCAGATCGTGATGCAGC.........	22	1	4.00	4	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAGCAGATCGTGATGCAGC.........	19	1	4.00	4	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCCTGCTTCGACATCGGA...............................................................................................................................................................................................................................................................	18	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CAAGCAGATCGTGATGCAGC.........	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATCGGAGAGTATGTGCGCC..................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TTGGAACAATTGGGAGGCAAGCAG......................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
................................................................................................................................................................................................................................GTCTTGGAACAATTGGGAGGC............................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATCGGAGAGTATGTGCGCCACT...............................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CATCGGAGAGTATGTGCGCCAC................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CGACATCGGAGAGTATGT.......................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AATTGGGAGGCAAGCAGATCGT.................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GGCAAGCAGATCGTGATGCA...........	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ACAATTGGGAGGCAAGCAGATCGT.................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CATCGGAGAGTATGTGCGC...................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TCGACATCGGAGAGTATGT.......................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ACATCGGAGAGTATGTGCGCCACTA..............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................AGCAGATCGTGATGCAGCATCT.....	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CATCGGAGAGTATGTGCGCCACT...............................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTATGTGCGCCACTATCCCCGCGG.....................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................GGCAAGCAGATCGTGATGCAGG.........	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CTATCCCCGCGGCAAGCAC..............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................GAACAATTGGGAGGCAAGCAGATCGT.................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................GCAAGCAGATCGTGATGC............	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................ATTGGGAGGCAAGCAGATC...................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCCTGCTTCGACATCGGAGA.............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................AGATCGTGATGCAGCATCTT....	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCCTGCTTCGACATCGGAGAGTATGTGCGCCACTATCCCCGCGGCAAGCAGTAAGTAC----A-----GATT--------------------------------------------------------TAA-----------------TGTT-------------AC------------A----TACAATTC--TATTAACAAATCCT-----ATTTGTTTAGCGTCTTGGAACAATTGGGAGGTAAGCAGATCGTGATGCAGCATCTTGGCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................................................................................GTAAGCAGATCGTGATGCAGC.........	21	1	5.00	5	2	1	2	0
....................................................................................................................................................................................................................................TGGAACAATTGGGAGGTAAGC........................	21	1	3.00	3	0	1	2	0
..................................................................................................................................................................................................................................................GGTAAGCAGATCGTGATGCAGC.........	22	1	3.00	3	0	2	1	0
...................................................................................................................................................................................................................................................GTAAGCAGATCGTGATGC............	18	1	2.00	2	0	0	2	0
..................................................................................................................................................................................................................................................GGTAAGCAGATCGTGATGCAGCATCTT....	27	1	2.00	2	0	0	2	0
................................................................................................................................................................................................................................................GAGGTAAGCAGATCGTGATGCAGC.........	24	1	2.00	2	0	1	1	0
................................................................................................................................................................................................................................GTCTTGGAACAATTGGGAGGTAAGC........................	25	1	2.00	2	0	0	2	0
..................................................................................................................................................................................................................................................GGTAAGCAGATCGTGATGCAGCAT.......	24	1	2.00	2	0	1	1	0
..................GAGTATGTGCGCCACTAT.............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................AATTGGGAGGTAAGCAGATCGT.................	22	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................................AAGCAGATCGTGATGCAGCATCTT....	24	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................AGGTAAGCAGATCGTGATGCAGC.........	23	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................TGGAACAATTGGGAGGTAAGCAGATCGT.................	28	1	1.00	1	0	1	0	0
.........GACATCGGAGAGTATGTGCGCCACT...............................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................GGAACAATTGGGAGGTAAGCA.......................	21	1	1.00	1	0	1	0	0
..CTGCTTCGACATCGGAGAGTATGT.......................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
........CGACATCGGAGAGTATGTGCGC...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................AATTGGGAGGTAAGCAGATCGTGAT..............	25	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................TAAGCAGATCGTGATGCAGC.........	20	1	1.00	1	0	0	1	0
......................ATGTGCGCCACTATCCCCGCGG.....................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................GTAAGCAGATCGTGATGCA...........	19	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................GAGGTAAGCAGATCGTGATGCAGCAT.......	26	1	1.00	1	0	1	0	0
...................................................................................................................................................................................................................................................GTAAGCAGATCGTGATGCAGCATCTT....	26	1	1.00	1	0	0	1	0
........CGACATCGGAGAGTATGT.......................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..................GAGTATGTGCGCCACTATCCCCGC.......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................GAGGTAAGCAGATCGTGATGC............	21	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................GAACAATTGGGAGGTAAGCAGATCGT.................	26	1	1.00	1	0	0	1	0
GCCTGCTTCGACATCGGAGAGT...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................TTGGGAGGTAAGCAGATCGT.................	20	1	1.00	1	0	0	1	0
GCCTGCTTCGACATCGGAGA.............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................CGTCTTGGAACAATTGGG................................	18	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................TGGAACAATTGGGAGGTAAGCA.......................	22	1	1.00	1	0	0	1	0
......................ATGTGCGCCACTATCCCCGC.......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
........CGACATCGGAGAGTATGTGCG....................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................AAGCAGATCGTGATGCAGCAT.......	21	1	1.00	1	0	1	0	0
.......TCGACATCGGAGAGTATGT.......................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0

dm3

GCCTGCTTCGACATCGGGGAGTATGTGCGCCACTATCCCCGCGGCAAGCAGTAAGTTT----A-----GATT--------------------------------------------------------TTAT-A-----------CTATGTT-------------AC------------A----TACAATCC--AATTACCAAATCAT-----TTTCTTCTAGCGTCTTGGAACAACTCGGAGGCAAGCAGATCGTGATGCAGCATCTTGGCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................GCGTCTTGGAACAACTCGGA...............................	20	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GCGTCTTGGAACAACTCGGAGG.............................	22	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GCGTCTTGGAACAACTCGGAG..............................	21	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TGCTTCGACATCGGGGAGTATGTGC.....................................................................................................................................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................GGCAAGCAGATCGTGATGCAGC.........	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0
......TTCGACATCGGGGAGTATGTGC.....................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GGAACAACTCGGAGGCAAGCA.......................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................CAGATCGTGATGCAGCATCTTGGCC	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GGCAAGCAGATCGTGATGCAGCATC......	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TGGAACAACTCGGAGGCAAGCAATC....................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TT--------------------------------------------------------TTAT-A-----------CTATGTT-------------AC------------A----TACA.....................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ACAACTCGGAGGCAAGCA.......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AGTATGTGCGCCACTATCCCC.........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................AAGCAGATCGTGATGCAGCATC......	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAGCAGATCGTGATGCAT..........	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCCTGCTTCGACATCGGAGAGTATGTGCGTCACTATCTCCGCGGCAAGCAGTGAGTAC----AATATAGATT--------------------------------------------------------TAAA-G-----------TCATATT-------------AC------------A----TACAATCA--TATTATTAAATCTT-----ATTTCCGTAGCGTCTTGGAACAACTGGGAGGCAAGCAGATCGTGATGCAGCATCTTGGCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................CGTCTTGGAACAACTGGGAGGC............................	22	1	14.00	14	0	0	0	0	0	0	14
..................................................................................................................................................................................................................................................GGCAAGCAGATCGTGATGCAGC.........	22	1	5.00	5	0	1	0	0	4	0	0
GCCTGCTTCGACATCGGA...............................................................................................................................................................................................................................................................	18	1	3.00	3	2	0	0	0	0	1	0
......................................................................................................................................................................................................................................................AGCAGATCGTGATGCAGCATCTT....	23	1	3.00	3	1	0	0	0	1	1	0
......................................................................................................................................................................................................................................................AGCAGATCGTGATGCAGCAT.......	20	1	3.00	3	0	0	0	0	2	1	0
..................................................................................................................................................................................................TATTATTAAATCTT-----ATTTCCGTAG..................................................	24	1	2.00	2	0	0	0	0	0	2	0
................................................................................................................................................................................................................................GTCTTGGAACAACTGGGAGGC............................	21	1	2.00	2	1	1	0	0	0	0	0
.........GACATCGGAGAGTATGTGCGTCACT...............................................................................................................................................................................................................................................	25	1	2.00	2	1	1	0	0	0	0	0
GCCTGCTTCGACATCGGAGA.............................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	1	0	1	0
.....................................................................................................................................................................................................................................................AAGCAGATCGTGATGCAGCATCTT....	24	1	2.00	2	0	0	0	0	2	0	0
..CTGCTTCGACATCGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2	0
.....................................................................................................................................................................................................................................................AAGCAGATCGTGATGCAGC.........	19	1	1.00	1	0	0	0	0	1	0	0
..CTGCTTCGACATCGGAGAGTATGTGCGT...................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................GGCAAGCAGATCGTGATGCAGCATCTT....	27	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................ACTGGGAGGCAAGCAGATCGT.................	21	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................CTTGGAACAACTGGGAGGCAAGC........................	23	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................CTTGGAACAACTGGGAGG.............................	18	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................GAGGCAAGCAGATCGTGATGCAGC.........	24	1	1.00	1	0	0	0	0	1	0	0
..........ACATCGGAGAGTATGTGCGTCA.................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
....GCTTCGACATCGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................CTTGGAACAACTGGGAGGC............................	19	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................AGCAGATCGTGATGCAGCATCT.....	22	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................GTCTTGGAACAACTGGGA...............................	18	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................GAACAACTGGGAGGCAAG.........................	18	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................GCAGATCGTGATGCAGCAT.......	19	1	1.00	1	0	0	0	1	0	0	0
..................GAGTATGTGCGTCACTATCTCCGCGGC....................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
............................GTCACTATCTCCGCGGCAAGCA...............................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAGCAGATCGTGATGCAGCATCT.....	23	1	1.00	1	1	0	0	0	0	0	0
..................GAGTATGTGCGTCACTAT.............................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AACTGGGAGGCAAGCAGA.....................	18	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................CAAGCAGATCGTGATGCAGC.........	20	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................CGTCTTGGAACAACTGGGAGGCAAGCA.......................	27	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................CGTGATGCAGCATCTTGG..	18	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................AGATCGTGATGCAGCATCTT....	20	1	1.00	1	1	0	0	0	0	0	0
..............................CACTATCTCCGCGGCAAGCAC..............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................GAACAACTGGGAGGCAAGC........................	19	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................ACAACTGGGAGGCAAGCA.......................	18	1	1.00	1	0	0	0	0	0	1	0
.............TCGGAGAGTATGTGCGTCACT...............................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CAACTGGGAGGCAAGCAGATCGT.................	23	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GGCAAGCAGATCGTGATGCAG..........	21	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................ACTGGGAGGCAAGCAGATCGTGA...............	23	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................GTCTTGGAACAACTGGGAG..............................	19	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................GTCTTGGAACAACTGGGAGGCAAGC........................	25	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................AACTGGGAGGCAAGCAGATCGTG................	23	1	1.00	1	0	0	0	0	0	1	0
........CGACATCGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
....GCTTCGACATCGGAGAGTATGTGCGT...................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................TGGAACAACTGGGAGGCAAGC........................	21	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................GATCGTGATGCAGCATCTTGGC.	22	1	1.00	1	0	1	0	0	0	0	0
......................ATGTGCGTCACTATCTCCGCG......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................CAACTGGGAGGCAAGCAGATCGTG................	24	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................CGTGATGCAGCATCTTGGC.	19	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................AACTGGGAGGCAAGCAGATCGTGAT..............	25	1	1.00	1	0	0	0	0	1	0	0
....................GTATGTGCGTCACTATCTCCGCGGCAA..................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................GAACAACTGGGAGGCAAGCAGATCGTG................	27	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................AAGCAGATCGTGATGCAG..........	18	2	0.50	1	0	0	0	0	0	1	0

droYak3

GCCTGCTTCGACATCGGAGAGTATGTGCGTCACTATCTACGCGGCAAGCAGTAAGTAT----AATATAGATT--------------------------------------------------------TAAA-G-----------TCATGTT-------------AC------------A----TAATATCA--TATTCATAAATCTT-----ATTTCCCTAGCGTCCTGGAACAACTGGGAGGCAAGCAGATCGTAATGCAGCATCTTGGCC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................GAGTATGTGCGTCACTATCTACGC.......................................................................................................................................................................................................................................	24	1	4.00	4	0	2	0	0	0	0	2	0	0	0	0
......................................................................................................................................................................................................................................................AGCAGATCGTAATGCAGCATCTT....	23	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
.....CTTCGACATCGGAGAGTATGTGCGTC..................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AACAACTGGGAGGCAAGCA.......................	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................ACAACTGGGAGGCAAGCAGATC...................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
GCCTGCTTCGACATCGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................AGATCGTAATGCAGCATCTT....	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAGCAGATCGTAATGCAGC.........	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................CACTATCTACGCGGCAAGC................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	1	0	0	0	0	0	0
......................ATGTGCGTCACTATCTACGC.......................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
GCCTGCTTCGACATCGGA...............................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..................GAGTATGTGCGTCACTATCT...........................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...........CATCGGAGAGTATGTGCGT...................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................GGAACAACTGGGAGGCAAGC........................	20	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.......TCGACATCGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................................................................................AACTGGGAGGCAAGCAGATCGTA................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AGGCAAGCAGATCGTAATGC............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................CACTATCTACGCGGCAAGCA...............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................GTCCTGGAACAACTGGGAGGCA...........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GAACAACTGGGAGGCAAGCA.......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CAACTGGGAGGCAAGCAGAT....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......TCGACATCGGAGAGTATGTGCGTC..................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................CCTGGAACAACTGGGAGGCAAGCA.......................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................AGATCGTAATGCAGCATCT.....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................ACTATCTACGCGGCAAGCA...............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
GCCTGCTTCGACATCGGAGA.............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....GCTTCGACATCGGAGAGTATGTGCGTC..................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................GAGGCAAGCAGATCGTAATGC............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................GGCAAGCAGATCGTAATGCAA..........	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...TGCTTCGACATCGGAGAGTATGTGCGT...................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CGTCCTGGAACAACTGGGAGGCAAGCAGA.....................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................AACAACTGGGAGGCAAGCAG......................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................CCTGGAACAACTGGGAGGCA...........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................AGGCAAGCAGATCGTAATGCAG..........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................AAGCAGATCGTAATGCAGCATCTTGG..	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........CATCGGAGAGTATGTGCGTC..................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........CGACATCGGAGAGTATGTGCGT...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................CTGGAACAACTGGGAGGCAAGC........................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................AGCAGATCGTAATGCAGCAT.......	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................CAACTGGGAGGCAAGCAGATCGT.................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............TCGGAGAGTATGTGCGTCACT...............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AACTGGGAGGCAAGCAGATC...................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............TCGGAGAGTATGTGCGTCA.................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................GAGTATGTGCGTCACTATCTAC.........................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GAACAACTGGGAGGCAAGCAGATC...................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................GGCAAGCAGATCGTAATGCAGC.........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ACAACTGGGAGGCAAGCAGATCGT.................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................AGGCAAGCAGATCGTAATGCAGCAT.......	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......TCGACATCGGAGAGTATGTGCGTCA.................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................GGAACAACTGGGAGGCAAGCA.......................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................CGTCCTGGAACAACTGGGAGGCAAGC........................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................TGGAACAACTGGGAGGCAAGCAGATCGT.................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................ATCGTAATGCAGCATCTTGGC.	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
GCCTGCTTCGACATCGGAGAGTATGTG......................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................CGTCCTGGAACAACTGGGAGGC............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GAGGCAAGCAGATCGTAATG.............	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
GCCTGCTTCGACATCGGAGAGT...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................GAGTATGTGCGTCACTATCTACGCGGC....................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AGGCAAGCAGATCGTAATGCAGC.........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................AAGCAGATCGTAATGCAGCATC......	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........CATCGGAGAGTATGTGCGTT..................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............ATCGGAGAGTATGTGCGTCA.................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GCCTGCTTCGACATCGGAGAGTATGTCCGTCACTATCCCCGCGGCAAGCAGTAAGTAT----A---------TAGTACTCGATGCTT--AAATGTGCTGA---GCC--------AGCGAGAACCC-ATTTATCT-----------------A-------------AG---CT-------A----CAACACCA--CATTAATCATACTC-----TCTTCCTTAGTGTGCTGGAACAGCTTGGTGGAAAGCAGATCGTGATGCAGCATCTGGGTC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCCTGCTTTGACATCGGAGAGTATGTGCGTCACTACCCCCGCGGCAAGCAGTGAGTAT----A---------TAGAAT-AGATGCAGAG-AATG-------GTGCCCAAAACATAGAGGGAACCA-TTTGAACT-----------TTGTAGT-------------AC------------T----TAGCACCT--TATTAATAAACCTC-----TTTTCCTCAGTGTGCTGGAGCAGCTGGGTGGCAAACAGATCGTGATGCAGCACCTGGGAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCCTGCTTTGACATCGGAGAGTATGTGCGTCACTATCCCCGCGGCAAGCAGTGAGTAT----A-----TATT--------------------------------------------------------TTATTT-----------TATTATT-------------AA------------A----AAACACCT--TAATAATAAACTCC-----TGTTTCTTAGTGTGCTGGAGCAGCTGGGCGGCAAACAGATCGTGATGCAGCATCTGGGAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCTAAT---------------------------------------------------------------------------------------------------------------------------------------------ACACT---------------------------AT-----ACATTA--CATTTCTAAATCTT-----TATTCCTTAGTGTCTTGGAGCAACTGGGTGGCAAACAGATCGTAATGCAGCATTTGGGTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCCTGCTTCGACATCGGAGAATATGTGCGTCACTATCCCCGCGGCAAGCAGTGAGTAT----A---------AACTGT-AGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTAAAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCCTGCTTTGACATCGGAGAGTACGTGCGCCACTATCCTCGCGGCAAGCAGTGAGTAT----A---------CAGTAT-AGT-----------TATCTGAAATACCCAC-----------------------------------------------------------TAT--------------AGTAAAC--TTCTAACA-AACAT-----TTTATTTTAGTGTGCTGGAGCAGCTGGGAGGCAAACAGATCGTGATGCAGCATCTGGGCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCCTGCTTTGATATTGGAGAGTATGTGCGTCACTATCCCCGCGGCAAGCAGTGAGTAT----A---------CAAGG------------AGATA-------ATTCCCAA-----------------------------------------------------------AAAAACAAACCTT-----A-------ATTTAACTTTCTTT-----TATTCCTCAGTGTCCTGGAGCAGCTGGGTGGCAAGCAGATCGTGATGCAGCATTTGGGCC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCCTGCTTCGATATCGGAGAGTATGTGCGTCACTATCCTCGCGGCAAGCAGTAAGTAT----TATT-----T--------------------------------------------------------CTGA-T-----------AGAAGTT-------------GG------------A----TGAAATCTGTTATTAACAC--TTC-----CCACTTGCAGTGTCCTGGAACAGCTGGGTGGCAAGCAGATTGTGATGCAACATCTGGGCC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................GTCCTGGAACAGCTGGGTGGC............................	21	1	4.00	4	1	1	0	0	2	0
.........GATATCGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	19	1	3.00	3	0	2	0	0	1	0
.......................................................................................................................................................................................................................................................GCAGATTGTGATGCAACATCT.....	21	1	2.00	2	0	2	0	0	0	0
.........GATATCGGAGAGTATGTGCGTCACT...............................................................................................................................................................................................................................................	25	1	2.00	2	1	0	0	0	1	0
................................................................................................................................................................................................................................GTCCTGGAACAGCTGGGTGG.............................	20	1	2.00	2	0	0	2	0	0	0
......................ATGTGCGTCACTATCCTCGCGGC....................................................................................................................................................................................................................................	23	1	2.00	2	1	1	0	0	0	0
..........................................................................................................................................................................................................................................................GATTGTGATGCAACATCTGGGC.	22	1	2.00	2	0	2	0	0	0	0
....GCTTCGATATCGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................ATTGTGATGCAACATCTGGGC.	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................AGCTGGGTGGCAAGCAGATTGTGATGC............	27	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................GATTGTGATGCAACATCTGGGCC	23	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................AGATTGTGATGCAACATCTGGGC.	23	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................GTCCTGGAACAGCTGGGTGGCAAG.........................	24	1	1.00	1	0	1	0	0	0	0
.........GATATCGGAGAGTATGTGCGTCAC................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................ACAGCTGGGTGGCAAGCAGA.....................	20	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................GTCCTGGAACAGCTGGGTGGCAAGCAG......................	27	1	1.00	1	1	0	0	0	0	0
............ATCGGAGAGTATGTGCGTCACT...............................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................GTCCTGGAACAGCTGGGTGGCAA..........................	23	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................TCCTGGAACAGCTGGGTGGCAAGCA.......................	25	1	1.00	1	1	0	0	0	0	0
........CGATATCGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................TGGGTGGCAAGCAGATTGT.................	19	1	1.00	1	0	0	0	0	1	0
GCCTGCTTCGATATCGGAGA.............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................GTCCTGGAACAGCTGGGTGGCA...........................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................TGTTATTAACAC--TTC-----CCACTTGCAG..................................................	25	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................CTGGAACAGCTGGGTGGCA...........................	19	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................GCTGGGTGGCAAGCAGATTGTGATGC............	26	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................TCCTGGAACAGCTGGGTG..............................	18	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................GTCCTGGAACAGCTGGGTGGT............................	21	1	1.00	1	0	0	0	0	1	0
.........GATATCGGAGAGTATGTGCGTC..................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..........ATATCGGAGAGTATGTGCGTCACT...............................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
....................GTATGTGCGTCACTATCCTC.........................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
GCCTGCTTCGATATCGGAGAG............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
................GAGAGTATGTGCGTCACTATCCT..........................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................GGGTGGCAAGCAGATTGTGATGCAAC.........	26	1	1.00	1	0	1	0	0	0	0
............................GTCACTATCCTCGCGGCAAGCA...............................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droBip1

GCCTGCTTTGACATTGGAGAGTATGTGCGTCATTATCCCCGCGGCAAGCAGTAAGTTTTCATA---------TACTG------------GGATGAACTGG------------------------------------------------------------------GATGAAGAGACT-CTCAACCACACCT------------CTTC-----TCAATTATAGTGTCCTGGAACAGCTGGGTGGCAAACAGATTGTAATGCAACATCTGGGCC	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCCTGCTTCGATATTGGAGAGTATGTGCGTCACTATCCCCGCGGCAAACAGTAAGCTC----TAAATA---------------------------------------------CATT---CTCAA-TT-----------------------TGTGCTCTCATCTT-----------------AATC---------------GGATCTC-----TCGTTTCCAGTGTCCTGGAGCAATTGGGCGGCAAACAGATTGTGATGCAGCATCTGGGCC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................................AAACAGATTGTGATGCAGCAT.......	21	1	9.00	9	0	3	0	0	0	0	6	0	0	0
................................................................................................................................................................................................................................GTCCTGGAGCAATTGGGCGGC............................	21	1	7.00	7	0	6	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................AAACAGATTGTGATGCAGC.........	19	1	5.00	5	0	1	2	0	2	0	0	0	0	0
................................................................................................................................................................................................................................GTCCTGGAGCAATTGGGC...............................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GATTGTGATGCAGCATCTGGGC.	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............ATTGGAGAGTATGTGCGT...................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................GAGTATGTGCGTCACTATCCCCGCGGC....................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTGGGCGGCAAACAGATTGTGATGCAGC.........	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GTCCTGGAGCAATTGGGCGGCAAACA.......................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................AGTATGTGCGTCACTATCCCC.........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................TCACTATCCCCGCGGCAAAC................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......TTCGATATTGGAGAGTATGTG......................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................GTGCGTCACTATCCCCGCGGC....................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................GTATGTGCGTCACTATCCCCGCGGC....................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................AGATTGTGATGCAGCATCTGGGCC	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................GTCACTATCCCCGCGGCAA..................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGTGATGCAGCATCTGGGCC	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................................................................................................CTGGAGCAATTGGGCGGC............................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AATTGGGCGGCAAACAGA.....................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GGCAAACAGATTGTGATGCAGC.........	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............ATTGGAGAGTATGTGCGTCA.................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................GGCAAACAGATTGTGATGCAGCATCTG....	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................GTGATGCAGCATCTGGGCC	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............TGGAGAGTATGTGCGTCACT...............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................GGGCGGCAAACAGATTGT.................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................AGATTGTGATGCAGCATCTGGGC.	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................TATGTGCGTCACTATCCCCGCGGCAAA.................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AATTGGGCGGCAAACAGATTGTG................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GTCCTGGAGCAATTGGGCGG.............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........TATTGGAGAGTATGTGCGT...................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

GCCTGCTTCGATATTGGAGAGTATGTGCGTCACTATCCCCGCGGCAAACAGTAAGCTC----AAAATA---------------------------------------------CATT---CTCTA-TT-----------------------TGTGCTCTCATCTT-----------------AATC---------------GGATCTC-----TCGTTTCCAGTGTCCTGGAGCAATTGGGCGGCAAACAGATTGTGATGCAGCATCTGGGCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................AAACAGATTGTGATGCAGCAT.......	21	1	3.00	3	0	1	2	0	0	0
............ATTGGAGAGTATGTGCGTCACT...............................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................GCAAACAGATTGTGATGCAGCATCTGGGC.	29	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................GATTGTGATGCAGCATCTGGGC.	22	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................ATTGTGATGCAGCATCTGGGC.	21	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................AACAGATTGTGATGCAGCAT.......	20	1	2.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................ATTGTGATGCAGCATCTGGGCC	22	1	1.00	1	1	0	0	0	0	0
..CTGCTTCGATATTGGAGG.............................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................GATTGTGATGCAGCATCTGGGCC	23	1	1.00	1	1	0	0	0	0	0
..CTGCTTCGATATTGGAGA.............................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.......................TGTGCGTCACTATCCCCGCG......................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..........ATATTGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
......................ATGTGCGTCACTATCCCCGCGGCA...................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........GATATTGGAGAGTATGTGCGT...................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................TTGTGATGCAGCATCTGGGCC	21	1	1.00	1	1	0	0	0	0	0

droWil2

GCCTGCTTTGATATTGGAGAGTATGTGCGTCATTATCCACGTGGCAAGCAGTGAGTAT----C---------TGGAAT-TTTTTTTAAG-GATA-------A-----GAAGCATATT---CTTCATTT-----------------------TGAACTCCCATTTT-----------------GA---CACTTGTTGCTGAAAA--TTTTCAATTTTCTTACAGTGTTTTGGAACAACTTGGTGGCAAGCAGATTGTAATGCAACATTTGGGTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................GATTGTAATGCAACATTTGG...	20	1	4.00	4	0	3	1	0	0
...............................ATTATCCACGTGGCAAGCAT..............................................................................................................................................................................................................................	20	1	4.00	4	0	2	2	0	0
.........GATATTGGAGAGTATGTGCGTCA.................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	2	1	0
...............................ATTATCCACGTGGCAAGC................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
..........................................................................................................................................................................................................................................AACTTGGTGGCAAGCAGATTGT.................	22	1	2.00	2	0	0	1	1	0
........................................................................................................................................................................................................................................ACAACTTGGTGGCAAGCAGATTGTA................	25	1	2.00	2	0	2	0	0	0
..CTGCTTTGATATTGGAGA.............................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
......TTTGATATTGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
........TGATATTGGAGAGTATGTGCGTCATT...............................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	1	0
.....................................................................................................................................................................................................................................................AAGCAGATTGTAATGCAACATTTGG...	25	1	2.00	2	0	1	0	1	0
....GCTTTGATATTGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	1	0
.........GATATTGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	1
..............................................................................................................................................................................................................................................................GTAATGCAACATTTGGGT.	18	1	2.00	2	0	0	0	2	0
..........ATATTGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
.......................................................................................................................................................................................................................................................GCAGATTGTAATGCAACATTTGG...	23	1	2.00	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................GATTGTAATGCAACATTTGGGT.	22	1	2.00	2	0	1	0	1	0
................................................................................................................................................................................................................................GTTTTGGAACAACTTGGTGG.............................	20	1	2.00	2	0	1	1	0	0
...................................................................................................................................................................................................................................TTGGAACAACTTGGTGGCAAGCA.......................	23	1	2.00	2	0	0	1	1	0
..................................................................................................................................................................................................................................TTTGGAACAACTTGGTGGCA...........................	20	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................TGTTTTGGAACAACTTGGTGG.............................	21	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................ACTTGGTGGCAAGCAGATTGT.................	21	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................AGCAGATTGTAATGCAACATTTGG...	24	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................CTTGGTGGCAAGCAGATTG..................	19	1	1.00	1	0	0	0	1	0
..........ATATTGGAGAGTATGTGCGT...................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................GTTTTGGAACAACTTGGTGGCAA..........................	23	1	1.00	1	0	1	0	0	0
........................GTGCGTCATTATCCACGTGG.....................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
............ATTGGAGAGTATGTGCGTC..................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........................GTGCGTCATTATCCACGTGGCAAG.................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................TGTAATGCAACATTTGGGT.	19	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................AACAACTTGGTGGCAAGCAGATTG..................	24	1	1.00	1	0	1	0	0	0
......TTTGATATTGGAGAGTATGTGCGTCATT...............................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
........................GTGCGTCATTATCCACGTGGCAAGC................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.............TTGGAGAGTATGTGCGTCA.................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..............TGGAGAGTATGTGCGTCATTATCC...........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
........................................................................................................................................................................................................................................................CAGATTGTAATGCAACATTTGG...	22	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................ACAACTTGGTGGCAAGCAGATTGT.................	24	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................CAAGCAGATTGTAATGCAACATTTGG...	26	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................AGCAGATTGTAATGCAACATTTG....	23	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................CTTGGTGGCAAGCAGATTGT.................	20	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................TGTTTTGGAACAACTTGGTGGC............................	22	1	1.00	1	0	0	0	1	0
........................GTGCGTCATTATCCACGTGGCAA..................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..........ATATTGGAGAGTATGTGCGTC..................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................TTGGAACAACTTGGTGGCA...........................	19	1	1.00	1	0	0	0	1	0
...............................ATTATCCACGTGGCAAGCA...............................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................TGGAACAACTTGGTGGCAAGCAGATTG..................	27	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................TTTGGAACAACTTGGTGGCAAGCA.......................	24	1	1.00	1	0	0	0	0	1
........TGATATTGGAGAGTATGTGCGTC..................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
........TGATATTGGAGAGTATGTG......................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
GCCTGCTTTGATATTGGAG..............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
............ATTGGAGAGTATGTGCGTCATTATCC...........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1
...........................................................................................................................................................................................................................................ACTTGGTGGCAAGCAGATTGTA................	22	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................CAACTTGGTGGCAAGCAGATTGT.................	23	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................AACTTGGTGGCAAGCAGA.....................	18	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................GTTTTGGAACAACTTGGTGGCAAGCA.......................	26	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................TTGGTGGCAAGCAGATTGT.................	19	1	1.00	1	0	0	0	1	0
......................ATGTGCGTCATTATCCACGTGGCAAGC................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.......TTGATATTGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
...TGCTTTGATATTGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................TTGGTGGCAAGCAGATTGTAAT..............	22	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................................................GTTTTGGAACAACTTGGT...............................	18	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................AGATTGTAATGCAACATTTGGGT.	23	1	1.00	1	0	0	0	1	0
.........GATATTGGAGAGTATGTGCGTC..................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................CAGATTGTAATGCAACATTTGGGT.	24	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................TTGGAACAACTTGGTGGCAAGCAGATTGT.................	29	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................GTTTTGGAACAACTTGGTGGC............................	21	1	1.00	1	0	0	0	1	0
.......TTGATATTGGAGAGTATGTGCGTC..................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
......TTTGATATTGGAGAGTATGTGCGTC..................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.....................TATGTGCGTCATTATCCACGTGGCA...................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0

droVir3

GCCTGTTTCGATATTGGAGAGTATGTGCGTCACTATCCACGCGGCAAGCAGTGAGTCAA---ACTATC----GAGCAC-----------------------------------------------------A-GCGCCTTGCTGCCCATATT-------------AC------------A----TCGA--------------AATC--------TCTTTATAGTGTGCTGGAACAGCTGGGCGGCAAACAGATTGTGATGCAGCATTTGGGCC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................................AAACAGATTGTGATGCAGCAT.......	21	1	10.00	10	0	0	1	0	0	0	0	0	0	1	0	0	1	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0
..................................................................................................................................................................................................................................................GGCAAACAGATTGTGATGCAGCAT.......	24	1	3.00	3	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................AAACAGATTGTGATGCAGCATT......	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GTGCTGGAACAGCTGGGCGGCA...........................	22	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCCTGTTTCGATATTGGAGAGTAT.........................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAACAGATTGTGATGCAGCATTTGGGC.	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........CGATATTGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TGCTGGAACAGCTGGGCG..............................	18	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AACAGATTGTGATGCAGCATT......	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................GGCAAACAGATTGTGATGCAGCATTTG....	27	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ATTGTGATGCAGCATTTGGGC.	21	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAACAGATTGTGATGCAGCATTTG....	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............ATTGGAGAGTATGTGCGTC..................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................ACTATCCACGCGGCAAGCATGT............................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATTGGAGAGTATGTGCGTCA.................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ATTGTGATGCAGCATTTG....	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATTGGAGAGTATGTGCGTCACT...............................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................AGATTGTGATGCAGCATTTG....	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CAAACAGATTGTGATGCAGCAT.......	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................GCTGGGCGGCAAACAGATTGTGATGC............	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTATGTGCGTCACTATCCAC.........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GATTGTGATGCAGCATTTGGGC.	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGTGCTGGAACAGCTGGGCGGCA...........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................CGGCAAACAGATTGTGATGCAGC.........	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ATATTGGAGAGTATGTGCGTCA.................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................GCAAACAGATTGTGATGCAGCAT.......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ATTGTGATGCAGCATTTGGGCC	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............GGAGAGTATGTGCGTCACTAT.............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAACAGATTGTGATGCAGC.........	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GGAGAGTATGTGCGTCACTATCC...........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CAAACAGATTGTGATGCAGC.........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................GGCAAACAGATTGTGATGCAGC.........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTCGATATTGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GCGGCAAACAGATTGTGATGCAGCATT......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AACAGATTGTGATGCAGC.........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GCTGGAACAGCTGGGCGGC............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GCTGGGCGGCAAACAGATTGT.................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......TTCGATATTGGAGAGTATGTGCGTCA.................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GAGTATGTGCGTCACTATCC...........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TTGTGATGCAGCATTTGGG..	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................AAACAGATTGTGATGCAG..........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................AAACAGATTGTGATGCAGCATTTGG...	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AACAGATTGTGATGCAGCATTT.....	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AACAGATTGTGATGCAGCATTTT....	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............TTGGAGAGTATGTGCGTCACT...............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........CGATATTGGAGAGTATGTGCGT...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TGGAGAGTATGTGCGTCA.................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TCGATATTGGAGAGTATGTGCGTCACT...............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTCACTATCCACGCGGCAAGC................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CAAACAGATTGTGATGCAG..........	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GTGCTGGAACAGCTGGGC...............................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CAGCTGGGCGGCAAACAGATT...................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................CGGCAAACAGATTGTGATGC............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AACAGATTGTGATGCAGCAT.......	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTTTCGATATTGGAGAGTA..........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................GTATGTGCGTCACTATCCACGC.......................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................GTCACTATCCACGCGGCAA..................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CCTGTTTCGATATTGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................CAGATTGTGATGCAGCAT.......	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GTGCTGGAACAGCTGGGCGGCAA..........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCCTGTTTCGATATTGGAGAGTATGTGCGTCATTATCCACGTGGCAAGCAGTAAGTGAAT--A----AGATC--------------------------------------------------------TGGG-A-----------CCTGTCT-------------GC------------C----TGGCTCCT--ATCTAATATGCCTT-----TGCTTCACAGTGTGCTGGAGCAGTTGGGTGGCAAACAGATTGTTATGCAGCATCTGGGTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................................................................................AAACAGATTGTTATGCAGCAT.......	21	1	2.00	2	0	0	0	0	0	2
..........................................................................................................................................................................................................................................................GATTGTTATGCAGCATCTGG...	20	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................CTGGAGCAGTTGGGTGGC............................	18	1	1.00	1	1	0	0	0	0	0
..................................................GTAAGTGAAT--A----AGATC--------------------------------------------------------TGGG-A-----------CC..............................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
................GAGAGTATGTGCGTCATTATCC...........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.........GATATTGGAGAGTATGTGC.....................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................CTAATATGCCTT-----TGCTTCACAG..................................................	22	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................GATTGTTATGCAGCATCTGGGT.	22	1	1.00	1	1	0	0	0	0	0
........CGATATTGGAGAGTATGTGCGT...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
............ATTGGAGAGTATGTGCGTC..................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
......TTCGATATTGGAGAGTATGTG......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................ACAGATTGTTATGCAGCAT.......	19	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................AAACAGATTGTTATGCAGC.........	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................GCTGGAGCAGTTGGGTGGCAAAC........................	23	1	1.00	1	0	0	0	0	0	1
.............TTGGAGAGTATGTGCGTCATTATCCA..........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1

droGri2

GCCTGTTTCGATATTGGAGAGTATGTGCGTCATTATCCTCGCGGCAAGCAGTAAGTCAAC--G-A----ATTTGGCAC-----------------------------------------------------A-GTCCTCTTCT------------------------------------------GGTTTCT--TTTCATCT-TGCAT-----TTGCTTGTAGTGTCCTGGAACAGCTGGGCGGCAAACAGATTGTCATGCAGCATTTGGGCC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................GAGAGTATGTGCGTCATTATCCT..........................................................................................................................................................................................................................................	23	1	1.00	1	1	0
................GAGAGTATGTGCGTCATTA..............................................................................................................................................................................................................................................	19	1	1.00	1	0	1
...........................................................................................................................................................................................................................................GCTGGGCGGCAAACAGATTGTCATGCA...........	27	1	1.00	1	1	0
...................................................................................................................................................................................................................................CTGGAACAGCTGGGCGGCA...........................	19	1	1.00	1	0	1

dsi_18833

2l:16290884-16290940 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads