ID:

dsi_18828

 Coordinate:

3r:4354270-4354419 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_4354420_4354691_+]; exon [3r_4354420_4354691_+]; intron [3r_4351299_4354419_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTGCTCCACCTCATATCTGATGGCGAATCGGTTATGTGTCACATCAAAGATAGCTGGGAGCCAAATATAAATAGCTGACTTAGTCAGAAACTTTGTCCATAGAGATGGGCTTTCCAAGATAATAAGATTACATGGAAGCTTGCTTGATAATTATAATTACTTGTGCACTATTATAATAATTTATGATTGATTATTTGCAGTCAAGGGTCTGGATCACATCGCAGAAAACATTTTGTCGTACTTGGATGCC
**************************************************.((((((...)))...........(((((...))))).......((((((....)))))).(((((.(((......)))...))))))))(((..((((((((................(((((((....))))))))))))))).))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................................................................GTCTGGATCACATCGCAGA......................... 19 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................ATTTTGTCGTACTTGGATGC. 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................ATTTTGTCGTACTTGGATGCC 21 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................AGAAAACATTTTGTCGTACTTGGA.... 24 0 1 1.00 1 0 0 0 1 0 0
........................................................................................................................................AGCCTGCTTGATAATTATAATTACTTG....................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0
......................................................................................................................................................................................................................................TTTTGTCGTACTTGGATGCC 20 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................................GTCGTACTTGGATGG. 15 1 2 0.50 1 0 0 0 0 1 0
................CTGATGGCCAATCGGT.......................................................................................................................................................................................................................... 16 1 5 0.20 1 0 0 0 0 0 1

Anti-sense strand reads

GACGAGGTGGAGTATAGACTACCGCTTAGCCAATACACAGTGTAGTTTCTATCGACCCTCGGTTTATATTTATCGACTGAATCAGTCTTTGAAACAGGTATCTCTACCCGAAAGGTTCTATTATTCTAATGTACCTTCGAACGAACTATTAATATTAATGAACACGTGATAATATTATTAAATACTAACTAATAAACGTCAGTTCCCAGACCTAGTGTAGCGTCTTTTGTAAAACAGCATGAACCTACGG
**************************************************.((((((...)))...........(((((...))))).......((((((....)))))).(((((.(((......)))...))))))))(((..((((((((................(((((((....))))))))))))))).))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M024
male body		 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..............................................................................................CAGGTATCTGTCCACGAAAG........................................................................................................................................ 20 3 5 4.80 24 0 19 5 0 0 0 0
....................................ACTGTGTAGTTTCGATCGACACT............................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
.....................................TAGTGTAGTTTCTATCGACACT............................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.....................................CAGAGTAGTTTCTACCGACCCT............................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
...GAGGTGGAGAAAAGACTACGGC................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0
...........................AGCCAATACACACTGTACT............................................................................................................................................................................................................ 19 2 2 0.50 1 0 0 0 0 0 1 0
.....................................TAGCGTAGTTTCTACCGACCCT............................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0
....................................ACCGAGTAGTTTCGATCGACCCT............................................................................................................................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0
...............................................................TTATATTCATCGACTG........................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 1 0 0
.......................................GTGTAGTTTCGACCGACCCTCT............................................................................................................................................................................................. 22 3 4 0.25 1 1 0 0 0 0 0 0
.......................................GTGTAGTTTCGATCGACCCTAT............................................................................................................................................................................................. 22 3 5 0.20 1 1 0 0 0 0 0 0
...................................................................TTTTATCGGCTGAATCAG..................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 1 0 0
...............................................................TTATATTCAGCGACTGGAT........................................................................................................................................................................ 19 3 15 0.07 1 0 0 0 0 1 0 0
......................................................................................................................................ATTCGAACGAACTATG.................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 02:41 AM