dsi_18817

########################################################################################################################################################################################################################################################## CGGCGTCCAACGAAGCCTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCAGTGGAAAGCCCATTGCAGGCGATACTCCGCCAGATTTACACTCGGGCAGCTGGATTACCCAAAAGGCTTTCCGAAGAGATTAAGGAGGATGCCGATGCCGAGGCGGAGGAGCAATCTCTTACCGAAAACGTGCCCATTGTGGAGCGGGCTCTGGAGGATCTGCACAAGATTGCGGTGGCACTGGAGCAAAAACC *********************************************************************************************......((..((.............(((..(((...........)))....))).............))..))********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M053 female body	M025 embryo	O001 Testis	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
...............................................................................................ACTCGGGCAGCTGGATTACCC......................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................TGTGGAGCGGGCTCTGGAGGATC..................................	23	0	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................ATTGTGGAGCGGGCTCTGGAGGAT...................................	24	0	1	1.00	1	1	0	0	0	0	0
.................................................................................................TCGGGCAGCTGGATTACC.......................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................AAACGTGCCCATTGTGGAGCG................................................	21	0	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................CGGGCTCTGGAGGATCTGCACAA...........................	23	0	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................GAGGATGCCGATGCCGAGGCGGAGGAGC..................................................................................	28	0	1	1.00	1	0	1	0	0	0	0
............................................................................................................................TTCGGAAGAGATTAAGGA............................................................................................................	18	1	2	0.50	1	0	0	0	1	0	0
...................................................................................................................................................................................................TGGAGGGGGATCTGGAGGA....................................	19	2	17	0.06	1	0	0	0	0	1	0
........................................................................................................................................AAAGGAGGATGCCGA...................................................................................................	15	1	20	0.05	1	0	0	0	0	1	0
...................................................TGGCATTGGAAAGACCACT....................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................................TGCCCAGTCGGGAGCGGGC.............................................	19	3	20	0.05	1	0	1	0	0	0	0

GCCGCAGGTTGCTTCGGACCCTGTAGAAGCGGGTAGCGGTCAGTGGGTAAAACCGTCACCTTTCGGGTAACGTCCGCTATGAGGCGGTCTAAATGTGAGCCCGTCGACCTAATGGGTTTTCCGAAAGGCTTCTCTAATTCCTCCTACGGCTACGGCTCCGCCTCCTCGTTAGAGAATGGCTTTTGCACGGGTAACACCTCGCCCGAGACCTCCTAGACGTGTTCTAACGCCACCGTGACCTCGTTTTTGG ********************************************************************************......((..((.............(((..(((...........)))....))).............))..))*********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
........................................................................................................................................................CGGCTCCGACTCTTCATTAGAGA...........................................................................	23	3	1	1.00	1	1	0	0
.....................GGTAGGAGCGGGTAGCGGT..................................................................................................................................................................................................................	19	2	1	1.00	1	0	1	0
.........................................................................................................................................................GGCTCCGACTCTTCATTAGAGA...........................................................................	22	3	2	0.50	1	1	0	0
..............AGGACCTTGTAGAAGCGG..........................................................................................................................................................................................................................	18	2	10	0.10	1	0	0	1
...............GGACCTTGTAGAAGC............................................................................................................................................................................................................................	15	1	14	0.07	1	0	0	1
..............................CGGGAGCGGTCTGTGGGTA.........................................................................................................................................................................................................	19	3	16	0.06	1	0	1	0
........................AGTAGCGCGTAGCGGT..................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:9579291-9579540 +	dsi_18817	CG-----------GCGTCCAACGAAGCCTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCAGTGGAAAGCCCATTGCAGGCGATACTCCGCCAGATTTACACTCGGGCAGCTGGATTACCCAAAAGGCTTTCCGAAGAGATTAAGGAGGATGC---CGAT---------GCCGA------------GGCGGAGGAGCAATCTCTTACCGAAAACGTGCCCATTGTGGAGCGGGCTCTGGAGGATCTGCACAAGATTGCGGTGGCACTGGAG---C------------------------------------------AAAAACC------
droSec2	scaffold_0:2052395-2052644 +		CG-----------GCGTCCAACGAAGCCTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCAGTGGAAAGCCCATTGCAGGCTATACTCCGCCAGATTTACACTCGGGCAGCTGGATTACCCAAAAGGCTTTCCAAAGAGATTAAGGAGGATGC---CGAT---------GCTGA------------GGCGGAGGAGGAATCTCTTACCGAAAACGTGCCCATTGTGGAGCGAGCTCTGGAGGATCTGCACAAGATTGCGGTGGCACTGGAG---C------------------------------------------AAAAATC------
dm3	chr3L:9819475-9819724 +		CG-----------GCGTCCAACGAAGCGTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCCGTGGAAAGCCCATTGCAGGCAATACTCCGACAGATTTACACCCGGGCAGCTGGATTACCAAAAAGGCTTTCCAAAGAGATTAAGGAGGATGC---CGAC---------GCCGA------------GGCGGAGGAGGAATCTCTTACCGAAAACGTGCCCATCGTGGAGCGGGCACTGGAGGATCTGCACAAGATTGCGGTGGCACTGGAG---C------------------------------------------AAAAATC------
droEre2	scaffold_4784:9808285-9808534 +		CG-----------GCGTCTAACGAATCCTGGGACATCTTCGCCCATCGCCAATCACCCATTTTGGCCGTGGAAAGCCCACTGCAGGCGATTCTCCGCCAGATTTACACCCGGGCAGCTGGATTACCCAAAAGGCTTTCCAAGGAGATTAAGGAGGATGC---CGGT---------GCCGA------------GGAGGAGGAGGCATCACTTACTGAAAACGTGCCCAATGTGGAGCGGGCTCTGGAGGATCTGCACAAGATTGCGGTGGCACTGGAA---C------------------------------------------AAAAACC------
droYak3	3L:9793965-9794214 +		CG-----------GCGTCCAACGAATCCTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCAGTGGAAAGTCCACTGCAGGCGATTCTCCGCCAGATTTACACCCGGGCAGCTGGCTTACCGAAAAGGCTTTCCAAAGAGATTAAGGAGGATGC---CGAC---------GCCGA------------GGAGGAGGAGGCATCACTTACTGAAAACGTGCCCATTGTGGAGCGGGCTCTGGAGGATCTGCACAAGATTGCGGTGGCACTGGAG---C------------------------------------------AAAAACC------
droEug1	scf7180000409711:1676084-1676333 +		CG-----------GGATCCAACGAATCCTGGGACATCTTTGCCCATCGCCAGTCACCCATTTTGGCCGCGGAAAGTCCACTGCAGGCAATACTCCGGCAGATTTACACCCGGGCAGCTGGAGTACCCACGAGGCTTTCAAAAGAGATTAAGGAGGCAAC---CCCA---------GCTGA------------GGAGGAGGAGGCATCGCTTACCGAAAACGTGCCCATTGTGGAGCGGGCACTAGAGGATCTCCACAAGATTGCAGTGGCTCTAGAG---C------------------------------------------AAAAACC------
droBia1	scf7180000302428:7949989-7950241 -		CC-----------GGATCCAATGAATCCTGGGACATTTTCGCCCATCGACAGTCACCCATTTTGGCCGCGGAAAGTCCACTCCAAGCCATACTTCGCCAGATTTACACCCGTGCAGCTGGATTACCCACCAGGCTCTCGAAAGAGATTAAGGAGGAGAC---CGCC---------GCCAA---------GGGGGGGGAGGAGGAATCCCTAACCGAAAACGTGCCCATTGTGGAGCGGGCTCTAGAGGATCTGCACAAGATTGCAGTGGCTCTAGAG---C------------------------------------------AAAAACC------
droTak1	scf7180000414372:16096-16354 -		CG-----------GCATCCAACGAATCCTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCCGTGGAGAGTCCACTGCAGGCCATCCTCCGCCAGATTTACACCCGGGCAGCTGGTTTGCCCACGAGGCTCTCCAAAGAGATTAAGGAGGAGAC---CGCCGCTGGTGTCGCCGT------------AGAGGAGGAGGAGTCCCTCACCGAAAACGTGCCCATTGTGGAGCGGGCACTGGAGGATCTGCACAAGATTGCCGTGGCGCTGGAG---C------------------------------------------AAAAACC------
droEle1	scf7180000490564:615415-615676 +		CG-----------GGCAGCAACGATTCCTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCCGTGGAGAGTCCACTGCAGGCCATACTCCGCCAGATATACACTCGGGCAGCGGGTTTGCCCACCCGTCTGTCGAAGGAGATTCGGGAGGAGAC---CGCC---------GCCGAAGAAGAAGAGGAGGTGGCGGAGGAGGCCCTCACCGAAAACGTGCCCATTGTGGAGCGGGCACTGGAGGATCTGCACAAGATTGCAGTGGCCCTGGAG---C------------------------------------------AAAAACC------
droRho1	scf7180000776514:15881-16133 +		CG-----------GGCAGCAACGATTCCTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCCGTGGAGAGTCCACTGCAGGCCATCCTCCGGCAGATTTACACCCGGGCAGCTGGCTTACCCACGCGGCTCTCGAAAGAGATTAAGGAGGCGAC---ACCC---------GCCGA---------AGAGGAGGCGGAGGAGGCCCTCACCGAAAACGTGCCCATTGTGGAGCGGGCACTGGAGGATCTGCACAAGATTGCAGTGGCACTGGAG---C------------------------------------------AAAAACC------
droFic1	scf7180000453807:978170-978437 +		CG-----------GGTTCCAACGAATCCTGGGACATCTTCACCCACCGACAGTCACCCATTTTGGCGGTGGAGAGTCCACTCCAAGCGATTCTCCGCCAGATTTACACCCGAGCAGCTGGTTTGCCCACCAGACTCTCCAAGGAGATTAAGGAGGATGTAACCACT---------GCCAAAGGAGAGGTGGAGGAGGAGGAGGTTTCCCTCACCGAGAACGTGCCTATTGTGGAGCGAGCTCTCGAGGATCTGCACAAGATTGCAGTCGCATTGGAAAATC------------------------------------------GAAAACC------
droKik1	scf7180000302486:2411143-2411386 +		CG-----------GGGAGTAATGATTCCTGGGACATCTTCGCCAACCGACAGTCGCCCATTTTGGCTGTGGAAAGTCCTCTGCAGGCCATTCTCCGCCAAATATACACCCGAGCAGCTGGACTACCTGCTAGTCTGCCCAAGGAAGCCAAGGAGGAAGC---A---------------GA------------GGAAGAGGAGGAGTCCCTCACCGAGAACGTACCCATTGTGGAACGGGCTCTGGAGGATCTGCACAAGATTGCAGTGGCTTTGGAG---C------------------------------------------GAAAGGA------
droAna3	scaffold_13337:3552361-3552607 -		CC-----------GGCAACAACGAATCCTGGGACATCTTTGCCCATCGGCAGTCGCCCATTCTGACCATGGAGAGTCCCTTACAGGCCATCCTTCGCCAGATATACACCCGGGCAGCTGGACTTCCCCTTGGCGGACCCAA---------AGAGGCAGC---TCCA---------GTCGA------------AGAGCCAGAGGAGTCTCTTACCGAGAACGTGCCCATAGTGGAAAGAGCCCTGGAGGACCTGCACAAGATTGCCCAGGCTCTGGAG---G------------------------------------------GCAAGCCCAGAAA
droBip1	scf7180000396387:52395-52641 +		CC-----------GGCAATAACGAATCCTGGGACATCTTTGCCCATCGGCAGTCGCCCATTCTGACCATGGAAAGCCCATTGCAGGCCATCCTCCGGCAGATATACACCCGGGCAGCTGGACTACCCCTTGGTAGCGCCAAA---------GAGGCTGC---CCCT---------GTCGA------------AGAGCCTGAGGAGTCCCTTACCGAGAACGTGCCCATTGTGGAAAGAGCCCTGGAGGACCTCCATAAGATTGCCCAGGCTCTGGAG---G------------------------------------------GCAAGCCCCGGAA
dp5	XR_group6:9842935-9843231 -		CAAACCAGATAGCGGCCACAACGAATTGTGGGACATGTTCTCCTCGCGCCAGTCGCCCATTCTGGCCGTGGAGAGTCCTCTGCAGGCGATACTCCGTCAGATCTATTGCCGTGCATCGGGAAGACCCGGCAGCGTGGCCAAAG---------AAGAGTC---CATA---------GCGGA------------GGCGGCCAACGAAGAGATCACCGAGAATGTGCCGATTGTGGAACGAGCCCTCGAGGACCTGCACAGAATCGCCCTGGCACTGGACAAGCAACAGGGGCAGCCCCAGCCGGATCTGGCGATGGATCAGCATCAGAAGCA------
droPer2	scaffold_61:121718-122002 -		CG-----------GC-CACAACGAATTGTGGGACATGTTCTCCTCGCGCCAGTCGCCCATTCTGGCCGTGGAGAGTCCTCTGCAAGCGATACTCCGTCAGATCTACTGCCGTGCATCGGGAAGACCCGGCAGCGTGGCCAAAG---------AAGAGTC---CATA---------GCGGA------------GGCGGCCAACGAAGAGATCACCGAGAATGTGCCGATTGTGGAACGAGCCCTCGAGGACCTGCACAGAATCGCCCTGGCACTGGACAAGCAACAGGGGCAGCCACAGCCGGATCTGGCGATGGAACAGCATCAGAAGCA------
droWil2	scf2_1100000004762:1078204-1078456 -		AA-----------GCAAATAACGAATTATGGGACATGTTCGCCTCACGACAGTCACCCATTTTGGCTGTGGAAAGTCCCCTTCAGGCAATACTACGACAAATTTATTGCCGAGCAGGTGGCCTAACTGGCGGAGTCTGTAAACAAGAACAGACGAATAT---ATCG---------GACAT---------GGTAAGTGAACAGGTCTCTGTGGCCGAAAACGTGCCAATTGTGGAACGAGCCCTGGAGGATCTGCATCGTATTGCCGTGGCATTGGAC---G------------------------------------------ATGCTTC------
droVir3	scaffold_13049:8636262-8636496 -		C------------------AATGAGCTCTGGGATATGTTTGCCTCACGGCAATCGCCCATTCTGGCCGTGGAAAGTCCACTGCAGGCGATACTGCGACAAATTTACTGCCGCGCAGCTGGTATACAGCTA---CTGCCCAAGGAG---CAGGTCATGCC---G------GATATG---CA------------CCTGCAGCCCGTCATGCCCACAGAGAACGTGCCAATTGTGGAGCGCGCACTGGAGGATCTGCACAAGATTGCCATTGCACTGGAC---A------------------------------------------GCGA--T------
droMoj3	scaffold_6680:6705167-6705397 +		C------------------AACGAGCTGTGGGACCTGTTCGCATCGAGGCAATCTCCCATCCTGGCTGTGGAGAGTCCTTTGCAGGCCATATTAAGGCAAATTTACTGCCGCGCAGCTGGCATTCAGCTG---CAGCCCAAGGAGCAGCAGGACAGCCC---AGTG---------CTTCA------------GCAGGAGCCAGCCGTGCCCGCTGAGAACGTGCCGATAGTGGAGCGTGCTCTGGAGGATCTGCATCGCATTGCCATTGCACTGGA------------------------------------------------------------
droGri2	scaffold_15110:4373970-4374206 -		C------------------AATGAGTCCTGGGATATGTTTGCCTCGCGCCAATCTCCAATCCTGGCCGTGGAGAGTCCCTTGCAGGCTATACTACGGCAGATTTATTGCCGCGCCGCTGGCATACAAG------TGTCGACCAAGGATCAGGAGGAGGC---G------AAAACGCCACT------------CGAAGCGGTTGAAGTGCCCGCCGAGAACGTGCCGATTGTAGAGCGTGCTTTGGAGGACCTGCACAAGATTGCCGTGGCTTTGGAT---G------------------------------------------GCGA---------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CG-----------GCGTCCAACGAAGCCTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCAGTGGAAAGCCCATTGCAGGCGATACTCCGCCAGATTTACACTCGGGCAGCTGGATTACCCAAAAGGCTTTCCGAAGAGATTAAGGAGGATGC---CGAT---------GCCGA------------GGCGGAGGAGCAATCTCTTACCGAAAACGTGCCCATTGTGGAGCGGGCTCTGGAGGATCTGCACAAGATTGCGGTGGCACTGGAG---C------------------------------------------AAAAACC------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................ACTCGGGCAGCTGGATTACCC.................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TGTGGAGCGGGCTCTGGAGGATC.....................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATTGTGGAGCGGGCTCTGGAGGAT......................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................TCGGGCAGCTGGATTACC..................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AAACGTGCCCATTGTGGAGCG...................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CGGGCTCTGGAGGATCTGCACAA..............................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................GAGGATGC---CGAT---------GCCGA------------GGCGGAGGAGC.....................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CG-----------GCGTCCAACGAAGCCTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCAGTGGAAAGCCCATTGCAGGCTATACTCCGCCAGATTTACACTCGGGCAGCTGGATTACCCAAAAGGCTTTCCAAAGAGATTAAGGAGGATGC---CGAT---------GCTGA------------GGCGGAGGAGGAATCTCTTACCGAAAACGTGCCCATTGTGGAGCGAGCTCTGGAGGATCTGCACAAGATTGCGGTGGCACTGGAG---C------------------------------------------AAAAATC------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................................................................TTGTGGAGCGAGCTCTGGAGGATC.....................................................................................	24	1	2.00	2	1	0	0	1
............................................................................................................................................................TGC---CGAT---------GCTGA------------GGCGGAGGAGGAA...................................................................................................................................	25	1	2.00	2	1	1	0	0
............................................................................................................................................................................................................................................................GCACAAGATTGCGGTGGCACTGGAG---C------------------------------------------.............	26	1	1.00	1	0	0	0	1
......................................TCGCCCATCGCCAGTCACCCA.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................................ACAAGATTGCGGTGGCACTGGAG---C------------------------------------------.............	24	1	1.00	1	0	0	0	1
................................................................................................................................................................................................................................................................AAGATTGCGGTGGCACTGGAG---C------------------------------------------.............	22	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................ATTGTGGAGCGAGCTCTGGAGGATC.....................................................................................	25	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................TGTGGAGCGAGCTCTGGAGG........................................................................................	20	1	1.00	1	0	1	0	0
............................................................................................................................................................TGC---CGAT---------GCTGA------------GGCGGAG.........................................................................................................................................	19	1	1.00	1	1	0	0	0
..............................................................................................................GGGCAGCTGGATTACCCAAA..............................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................................GCACAAGATTGCGGTGGCA.................................................................	19	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................................................TTGTGGAGCGAGCTCTGGAGGAT......................................................................................	23	1	1.00	1	0	1	0	0

dm3

CG-----------GCGTCCAACGAAGCGTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCCGTGGAAAGCCCATTGCAGGCAATACTCCGACAGATTTACACCCGGGCAGCTGGATTACCAAAAAGGCTTTCCAAAGAGATTAAGGAGGATGC---CGAC---------GCCGA------------GGCGGAGGAGGAATCTCTTACCGAAAACGTGCCCATCGTGGAGCGGGCACTGGAGGATCTGCACAAGATTGCGGTGGCACTGGAG---C------------------------------------------AAAAATC------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................................................................GATTGCGGTGGCACTGGAG---C------------------------------------------A............	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGCGGTGGCACTGGAG---C------------------------------------------A............	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CCCGGGCAGCTGGATTACC..................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CGGGCAGCTGGATTACCA.................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................AGCGGGCACTGGAGGATCTGCA.................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................AGATTGCGGTGGCACTGGAG---C------------------------------------------AAA..........	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................................TGCGGTGGCACTGGAG---C------------------------------------------AATC.........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CGGGCACTGGAGGATCTGCA.................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................AGGATGC---CGAC---------GCCGA------------GGCGGAATC.......................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CAGCTGGATTACCAAAACA............................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droEre2

CG-----------GCGTCTAACGAATCCTGGGACATCTTCGCCCATCGCCAATCACCCATTTTGGCCGTGGAAAGCCCACTGCAGGCGATTCTCCGCCAGATTTACACCCGGGCAGCTGGATTACCCAAAAGGCTTTCCAAGGAGATTAAGGAGGATGC---CGGT---------GCCGA------------GGAGGAGGAGGCATCACTTACTGAAAACGTGCCCAATGTGGAGCGGGCTCTGGAGGATCTGCACAAGATTGCGGTGGCACTGGAA---C------------------------------------------AAAAACC------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................................................................................CACTTACTGAAAACGTGCCC..............................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................GGGCTCTGGAGGATCTGCAC................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.......................AATCCTGGGACATCTTCGCCCATCGCC..............................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GGAGCGGGCTCTGGAGGATCTGCACA...............................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................ATGTGGAGCGGGCTCTGGAGGATCT....................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................GAGCGGGCTCTGGAGGATC.....................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................GTGCCCAATGTGGAGCGGGCTC..............................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................TGTGGAGCGGGCTCTGGAGGATC.....................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GATTGCGGTGGCACTGGAA---........................................................	19	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................AAGGAGATTAAGGAGGATG..................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................ATTAAGGAGGATGC---CGGT---------GCCGA------------GGA.............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................GAGGATGC---CGGT---------GCCGA------------GGAGG...........................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................GGGCTCTGGAGGATCTGCA.................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....................................CTTCGCCCATCGCCAATCACCCA.....................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................ATGTGGAGCGGGCTCTGGAGGATC.....................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GCACAAGATTGCGGTGGCACTG..............................................................	22	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................GATTTACACCCGGGCAGCTGGATTACCC.................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................TTCCAAGGAGATTAAGGAGGATGC---C.............................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0

droYak3

CG-----------GCGTCCAACGAATCCTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCAGTGGAAAGTCCACTGCAGGCGATTCTCCGCCAGATTTACACCCGGGCAGCTGGCTTACCGAAAAGGCTTTCCAAAGAGATTAAGGAGGATGC---CGAC---------GCCGA------------GGAGGAGGAGGCATCACTTACTGAAAACGTGCCCATTGTGGAGCGGGCTCTGGAGGATCTGCACAAGATTGCGGTGGCACTGGAG---C------------------------------------------AAAAACC------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................TTGTGGAGCGGGCTCTGGAGGAT......................................................................................	23	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................GTGGAGCGGGCTCTGGAGGATC.....................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................TAAGGAGGATGC---CGAC---------GCCGA------------................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................GCACAAGATTGCGGTGGCAC................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................GA------------GGAGGAGGAGGCATCACT..............................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................CATCACTTACTGAAAACGTGCC...............................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TTGTGGAGCGGGCTCTGGAG.........................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................GAGGATGC---CGAC---------GCCGA------------GGAGGAG.........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................TTGCGGTGGCACTGGAG---C------------------------------------------AAAAA........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................GAGATTAAGGAGGATGC---CGAC---------.................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................AGAGATTAAGGAGGATGC---CGAC---------.................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................ATTGTGGAGCGGGCTCTGGAG.........................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................CCAGATTTACACCCGGGCAGCTGGCT......................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................TTGTGGAGCGGGCTCTGGAGGATC.....................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................ATTGCGGTGGCACTGGAG---C------------------------------------------AAAA.........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................AATCCTGGGACATCTTCGCC.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GCACAAGATTGCGGTGGCA.................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................ATTGCGGTGGCACTGGAG---C------------------------------------------A............	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................C---------GCCGA------------GGAGGAGGAGGC....................................................................................................................................	18	3	0.67	2	0	1	1	0	0	0	0	0	0	0	0

droEug1

CG-----------GGATCCAACGAATCCTGGGACATCTTTGCCCATCGCCAGTCACCCATTTTGGCCGCGGAAAGTCCACTGCAGGCAATACTCCGGCAGATTTACACCCGGGCAGCTGGAGTACCCACGAGGCTTTCAAAAGAGATTAAGGAGGCAAC---CCCA---------GCTGA------------GGAGGAGGAGGCATCGCTTACCGAAAACGTGCCCATTGTGGAGCGGGCACTAGAGGATCTCCACAAGATTGCAGTGGCTCTAGAG---C------------------------------------------AAAAACC------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CC-----------GGATCCAATGAATCCTGGGACATTTTCGCCCATCGACAGTCACCCATTTTGGCCGCGGAAAGTCCACTCCAAGCCATACTTCGCCAGATTTACACCCGTGCAGCTGGATTACCCACCAGGCTCTCGAAAGAGATTAAGGAGGAGAC---CGCC---------GCCAA---------GGGGGGGGAGGAGGAATCCCTAACCGAAAACGTGCCCATTGTGGAGCGGGCTCTAGAGGATCTGCACAAGATTGCAGTGGCTCTAGAG---C------------------------------------------AAAAACC------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CG-----------GCATCCAACGAATCCTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCCGTGGAGAGTCCACTGCAGGCCATCCTCCGCCAGATTTACACCCGGGCAGCTGGTTTGCCCACGAGGCTCTCCAAAGAGATTAAGGAGGAGAC---CGCCGCTGGTGTCGCCGT------------AGAGGAGGAGGAGTCCCTCACCGAAAACGTGCCCATTGTGGAGCGGGCACTGGAGGATCTGCACAAGATTGCCGTGGCGCTGGAG---C------------------------------------------AAAAACC------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CG-----------GGCAGCAACGATTCCTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCCGTGGAGAGTCCACTGCAGGCCATACTCCGCCAGATATACACTCGGGCAGCGGGTTTGCCCACCCGTCTGTCGAAGGAGATTCGGGAGGAGAC---CGCC---------GCCGAAGAAGAAGAGGAGGTGGCGGAGGAGGCCCTCACCGAAAACGTGCCCATTGTGGAGCGGGCACTGGAGGATCTGCACAAGATTGCAGTGGCCCTGGAG---C------------------------------------------AAAAACC------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CG-----------GGCAGCAACGATTCCTGGGACATCTTCGCCCATCGCCAGTCACCCATTTTGGCCGTGGAGAGTCCACTGCAGGCCATCCTCCGGCAGATTTACACCCGGGCAGCTGGCTTACCCACGCGGCTCTCGAAAGAGATTAAGGAGGCGAC---ACCC---------GCCGA---------AGAGGAGGCGGAGGAGGCCCTCACCGAAAACGTGCCCATTGTGGAGCGGGCACTGGAGGATCTGCACAAGATTGCAGTGGCACTGGAG---C------------------------------------------AAAAACC------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CG-----------GGTTCCAACGAATCCTGGGACATCTTCACCCACCGACAGTCACCCATTTTGGCGGTGGAGAGTCCACTCCAAGCGATTCTCCGCCAGATTTACACCCGAGCAGCTGGTTTGCCCACCAGACTCTCCAAGGAGATTAAGGAGGATGTAACCACT---------GCCAAAGGAGAGGTGGAGGAGGAGGAGGTTTCCCTCACCGAGAACGTGCCTATTGTGGAGCGAGCTCTCGAGGATCTGCACAAGATTGCAGTCGCATTGGAAAATC------------------------------------------GAAAACC------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CG-----------GGGAGTAATGATTCCTGGGACATCTTCGCCAACCGACAGTCGCCCATTTTGGCTGTGGAAAGTCCTCTGCAGGCCATTCTCCGCCAAATATACACCCGAGCAGCTGGACTACCTGCTAGTCTGCCCAAGGAAGCCAAGGAGGAAGC---A---------------GA------------GGAAGAGGAGGAGTCCCTCACCGAGAACGTACCCATTGTGGAACGGGCTCTGGAGGATCTGCACAAGATTGCAGTGGCTTTGGAG---C------------------------------------------GAAAGGA------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CC-----------GGCAACAACGAATCCTGGGACATCTTTGCCCATCGGCAGTCGCCCATTCTGACCATGGAGAGTCCCTTACAGGCCATCCTTCGCCAGATATACACCCGGGCAGCTGGACTTCCCCTTGGCGGACCCAA---------AGAGGCAGC---TCCA---------GTCGA------------AGAGCCAGAGGAGTCTCTTACCGAGAACGTGCCCATAGTGGAAAGAGCCCTGGAGGACCTGCACAAGATTGCCCAGGCTCTGGAG---G------------------------------------------GCAAGCCCAGAAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................................................GATTGCCCAGGCTCTGGAG---G------------------------------------------GCA..........	23	1	3.00	3	1	0	0	0	0	2
..........................................................................................................................................................................................................................................AAGAGCCCTGGAGGACCTGCACAAGA............................................................................	26	1	2.00	2	0	0	0	0	0	2
.................................................................................................................................................................................................................................................................AGATTGCCCAGGCTCTGGAG---........................................................	20	1	2.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................AGAGCCCTGGAGGACCTGCA.................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................TACCGAGAACGTGCCCATAGTGGAAAG...................................................................................................	27	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................CCCAGGCTCTGGAG---G------------------------------------------GCAAGCCCA....	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................AAGAGCCCTGGAGGACCTGCACAA..............................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................ATTGCCCAGGCTCTGGAG---........................................................	18	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................GCCCATAGTGGAAAGAGCC...............................................................................................	19	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................AGAGGCAGC---TCCA---------GTCGA------------AGAGCC..........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................TGCCCAGGCTCTGGAG---G------------------------------------------GCAAGCCC.....	25	1	1.00	1	1	0	0	0	0	0
.........................................................................................................CACCCGGGCAGCTGGACTTCCC.................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................CAAGATTGCCCAGGCTCTGGAG---G------------------------------------------GCA..........	26	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................GACCTGCACAAGATTGCCC......................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................CACCCGGGCAGCTGGACTTCCCCT...............................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................TGGAGAGTCCCTTACAGGCC........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................AGAGCCCTGGAGGACCTGCACAA..............................................................................	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................GGCAGC---TCCA---------GTCGA------------AGAGCC..........................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................AGAGCCCTGGAGGACCTGCACA...............................................................................	22	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................CCTTGGCGGACCCAA---------AGAGGCAGC---TCCA---------.................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................GAGCCCTGGAGGACCTGCAC................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................GAGGCAGC---TCCA---------GTCGA------------AG..............................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................GCCCTGGAGGACCTGCACA...............................................................................	19	1	1.00	1	0	0	0	0	0	1
.......................................TGCCCATCGGCAGTCGCCCATTCTGACCA............................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................GTGGAAAGAGCCCTGGAGGACCTG...................................................................................	24	1	1.00	1	1	0	0	0	0	0
......................GAATCCTGGGACATCTTTGCCC....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................GACCATGGAGAGTCCCTTACAGGCCATC.....................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
..........................................................ATTCTGACCATGGAGAGT....................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0

droBip1

CC-----------GGCAATAACGAATCCTGGGACATCTTTGCCCATCGGCAGTCGCCCATTCTGACCATGGAAAGCCCATTGCAGGCCATCCTCCGGCAGATATACACCCGGGCAGCTGGACTACCCCTTGGTAGCGCCAAA---------GAGGCTGC---CCCT---------GTCGA------------AGAGCCTGAGGAGTCCCTTACCGAGAACGTGCCCATTGTGGAAAGAGCCCTGGAGGACCTCCATAAGATTGCCCAGGCTCTGGAG---G------------------------------------------GCAAGCCCCGGAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAAACCAGATAGCGGCCACAACGAATTGTGGGACATGTTCTCCTCGCGCCAGTCGCCCATTCTGGCCGTGGAGAGTCCTCTGCAGGCGATACTCCGTCAGATCTATTGCCGTGCATCGGGAAGACCCGGCAGCGTGGCCAAAG---------AAGAGTC---CATA---------GCGGA------------GGCGGCCAACGAAGAGATCACCGAGAATGTGCCGATTGTGGAACGAGCCCTCGAGGACCTGCACAGAATCGCCCTGGCACTGGACAAGCAACAGGGGCAGCCCCAGCCGGATCTGGCGATGGATCAGCATCAGAAGCA------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................................................................................AATCGCCCTGGCACTGGACA..........................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................TC---CATA---------GCGGA------------GGCGGCC.........................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................GAGTC---CATA---------GCGGA------------GGCGGCCAACGAA...................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................ACTGGACAAGCAACAGGG................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GAGCCCTCGAGGACCTGC..................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................GTTCTCCTCGCGCCAGTCGCCC......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.............................................................CTGGCCGTGGAGAGTCCTCTGCA............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................GCAACAGGGGCAGCCCCAGCCGGAT................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GTGGAACGAGCCCTCGAG.........................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................CATTCTGGCCGTGGAGAG.....................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GCGGA------------GGCGGCCAACGAAGAGAT..............................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GCCGATTGTGGAACGAGCCC..............................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................GAAGAGATCACCGAGAATGTGCCGAC............................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........................................................ATTCTGGCCGTGGAGAGTC...................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................ACAGAATCGCCCTGGCACTGGAC...........................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................CATA---------GCGGA------------GGCGGCCAACGAAGAG................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................GAGTC---CATA---------GCGGA------------GGCGGCCA........................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................AAG---------AAGAGTC---CATA---------GCGGA------------G...............................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................TGTGCCGATTGTGGAACGAGCCCTCGAG.........................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................GCCCCAGCCGGATCTGGCGATG.......................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........................................................TTCTGGCCGTGGAGAGTCCT.................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................CGGCAGCGTGGCCAAAG---------AA......................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................GTTCTCCTCGCGCCAGTCGCCCAT....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TGTGGAACGAGCCCTCGAGGACCT....................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................GTTCTCCTCGCGCCAGTCGCCCA.....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................GCCGTGCATCGGGAAGACCCGGCAG............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................CAGCCGGATCTGGCGATGGATC...................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................TCGCCCTGGCACTGGACA..........................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

CG-----------GC-CACAACGAATTGTGGGACATGTTCTCCTCGCGCCAGTCGCCCATTCTGGCCGTGGAGAGTCCTCTGCAAGCGATACTCCGTCAGATCTACTGCCGTGCATCGGGAAGACCCGGCAGCGTGGCCAAAG---------AAGAGTC---CATA---------GCGGA------------GGCGGCCAACGAAGAGATCACCGAGAATGTGCCGATTGTGGAACGAGCCCTCGAGGACCTGCACAGAATCGCCCTGGCACTGGACAAGCAACAGGGGCAGCCACAGCCGGATCTGGCGATGGAACAGCATCAGAAGCA------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................ATTCTGGCCGTGGAGAGTCCTCTGC.............................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
........................................TCCTCGCGCCAGTCGCCCA.....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................GAATCGCCCTGGCACTGGACA..........................................................	21	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................GTGCCGATTGTGGAACGAGCC...............................................................................................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................GATCACCGAGAATGTGCCGATTGTGGAA.....................................................................................................	28	1	1.00	1	0	0	0	0	0	1
..................................ATGTTCTCCTCGCGCCAGTCGCC.......................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................GTC---CATA---------GCGGA------------GGCGGCCAACGAAG..................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...............................................................GGCCGTGGAGAGTCCTCTGCA............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................AGCCCTCGAGGACCTGCACA...............................................................................	20	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................GAGAATGTGCCGATTGTGGAACGAGCC...............................................................................................	27	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................GAGAATGTGCCGATTGTGGAAC....................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..............................................................................................................GTGCATCGGGAAGACCCGGCA.............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droWil2

AA-----------GCAAATAACGAATTATGGGACATGTTCGCCTCACGACAGTCACCCATTTTGGCTGTGGAAAGTCCCCTTCAGGCAATACTACGACAAATTTATTGCCGAGCAGGTGGCCTAACTGGCGGAGTCTGTAAACAAGAACAGACGAATAT---ATCG---------GACAT---------GGTAAGTGAACAGGTCTCTGTGGCCGAAAACGTGCCAATTGTGGAACGAGCCCTGGAGGATCTGCATCGTATTGCCGTGGCATTGGAC---G------------------------------------------ATGCTTC------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................TAACTGGCGGAGTCTGTAAACAAGAAC...........................................................................................................................................................................................	27	1	3.00	3	3	0	0	0	0
..........................................................................................................................TAACTGGCGGAGTCTGTAAACA................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0
....................................................................................................................................................CAGACGAATAT---ATCG---------GACAT---------GGT................................................................................................................................................	23	1	2.00	2	2	0	0	0	0
..............................................................................................................................TGGCGGAGTCTGTAAACAAG..............................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0
..................................................................................................AAATTTATTGCCGAGCAGG...........................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................GAGGATCTGCATCGTATTGCCGT.....................................................................	23	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................ATTGTGGAACGAGCCCTGGAGG........................................................................................	22	1	1.00	1	1	0	0	0	0
..........................................................................................................................TAACTGGCGGAGTCTGTAAACAAG..............................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
...........................................................TTTTGGCTGTGGAAAGTCCCCT...............................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
..................TAACGAATTATGGGACATGTTCGCCT....................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................AACGTGCCAATTGTGGAACGAGCCCC.............................................................................................	26	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................AACGTGCCAATTGTGGAACGAGCCCT.............................................................................................	26	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................................................ATTGTGGAACGAGCCCTGGAGGATCTGCA.................................................................................	29	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................ATTGCCGTGGCATTGGAC---........................................................	18	1	1.00	1	1	0	0	0	0
..........................................................ATTTTGGCTGTGGAAAGTCCCC................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
................................................................................................................................................AGAACAGACGAATAT---ATCG---------GAC..............................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................................................................................TCGTATTGCCGTGGCATTGGAC---G------------------------------------------AT...........	25	1	1.00	1	0	1	0	0	0
............................................................TTTGGCTGTGGAAAGTCCCCTTCAGGC.........................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
...........................................................TTTTGGCTGTGGAAAGTCCCC................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................TGTGGAACGAGCCCTGGAGGA.......................................................................................	21	1	1.00	1	0	1	0	0	0
..........................TATGGGACATGTTCGCCT....................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.....................................................................GGAAAGTCCCCTTCAGGCAATACT...................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................GCCAATTGTGGAACGAGCCCTGGAGGA.......................................................................................	27	1	1.00	1	0	0	1	0	0
.A-----------GCAAATAACGAATTATGGGACA.............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................GTGCCAATTGTGGAACGAGCCCTGGAGGA.......................................................................................	29	1	1.00	1	1	0	0	0	0

droVir3

C------------------AATGAGCTCTGGGATATGTTTGCCTCACGGCAATCGCCCATTCTGGCCGTGGAAAGTCCACTGCAGGCGATACTGCGACAAATTTACTGCCGCGCAGCTGGTATACAGCTA---CTGCCCAAGGAG---CAGGTCATGCC---G------GATATG---CA------------CCTGCAGCCCGTCATGCCCACAGAGAACGTGCCAATTGTGGAGCGCGCACTGGAGGATCTGCACAAGATTGCCATTGCACTGGAC---A------------------------------------------GCGA--T------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................GCCCAAGGAG---CAGGTCATGCC---G------GAT....................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................AATTTACTGCCGCGCAGCT..........................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AATTGTGGAGCGCGCACTGGAGG........................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................CAATTGTGGAGCGCGCACTGGAG.........................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................GATATGTTTGCCTCACGGCAATCG.........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AGCCCGTCATGCCCACAGA........................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TGTGGAGCGCGCACTGGAGGATCT....................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATTGTGGAGCGCGCACTGGAG.........................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................TTGTGGAGCGCGCACTGGAGGATCTGCA.................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................TGCAGCCCGTCATGCCCACAGA........................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GAACGTGCCAATTGTGGAGCGCGC................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TGGGATATGTTTGCCTCAC.................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AATGAGCTCTGGGATATGTT.........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ATGAGCTCTGGGATATGTTTGCC.....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AGTCCACTGCAGGCGATACTGCGACA.............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TTCTGGCCGTGGAAAGTCC..................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ATGAGCTCTGGGATATGTT.........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................AGCTA---CTGCCCAAGGAG---CAGGTC......................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TTGTGGAGCGCGCACTGGAGGATCTGC..................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGCCATTGCACTGGAC---A------------------------------------------GCGA--T------	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................TACTGCCGCGCAGCTGGTATA....................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CGCACTGGAGGATCTGCAC................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................ATGCC---G------GATATG---CA------------CCTGC...........................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AAATTTACTGCCGCGCAGCT..........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CTGGGATATGTTTGCCTCACGGCAATC..........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................ATTTACTGCCGCGCAGCTGGTATAC...................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................TTACTGCCGCGCAGCTGGTAT.....................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGCCCACAGAGAACGTGCC...............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AATTGTGGAGCGCGCACTGGAG.........................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................CACTGGAGGATCTGCACAAGAT...........................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................GAAAGTCCACTGCAGGCGAT......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

C------------------AACGAGCTGTGGGACCTGTTCGCATCGAGGCAATCTCCCATCCTGGCTGTGGAGAGTCCTTTGCAGGCCATATTAAGGCAAATTTACTGCCGCGCAGCTGGCATTCAGCTG---CAGCCCAAGGAGCAGCAGGACAGCCC---AGTG---------CTTCA------------GCAGGAGCCAGCCGTGCCCGCTGAGAACGTGCCGATAGTGGAGCGTGCTCTGGAGGATCTGCATCGCATTGCCATTGCACTGGA------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................CTCCCATCCTGGCTGTGGAGAGTCCT.................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................GCCCAAGGAGCAGCAGGACAGCCC---AGT...........................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................GGAGCAGCAGGACAGCCC---AG............................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................GGAGCGTGCTCTGGAGGATCTGCATCGC.............................................................................	28	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................TCA------------GCAGGAGCCAGCCGTGC...............................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................AGCGTGCTCTGGAGGATCTGCA.................................................................................	22	1	1.00	1	0	0	0	0	0	1

droGri2

C------------------AATGAGTCCTGGGATATGTTTGCCTCGCGCCAATCTCCAATCCTGGCCGTGGAGAGTCCCTTGCAGGCTATACTACGGCAGATTTATTGCCGCGCCGCTGGCATACAAG------TGTCGACCAAGGATCAGGAGGAGGC---G------AAAACGCCACT------------CGAAGCGGTTGAAGTGCCCGCCGAGAACGTGCCGATTGTAGAGCGTGCTTTGGAGGACCTGCACAAGATTGCCGTGGCTTTGGAT---G------------------------------------------GCGA---------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

-16.4	-16.4	-16.4	-16.2

dsi_18817

3l:9579341-9579490 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads