ID:

dsi_18811

Coordinate:

2r:5563921-5563984 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5563532_5563920_+]; CDS [2r_5563532_5563920_+]; CDS [2r_5563985_5564509_+]; exon [2r_5563985_5564509_+]; intron [2r_5563921_5563984_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------################################################## GACGAGTGCCTGACCATACCGAGTACATGGGGTCGTGAGGCGGGACAAAAGTAAGTGAATCACTCGGAATGCCTTTGGTCACTGTACTAAAGTACCCTTTCAATCCCCCGACAGTATTGTTATTTACGAGGGCGGCGTGGTCATGGCACAGGCGAGGTCCCTGT ************************************************............((..........((((.....((((....))))....)))).........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
..........................ATGGGGTCGTGAGGCGGGACAAA...................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0
..........................................GGACATGAGTAGGTGAATCACT....................................................................................................	22	3	1	1.00	1	0	0	1	0	0	0
..........................ATGGGGTCGTGAGGCGGGAC......................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
..............................................................................................................AAAATATTGTTATTTACGAGGGG...............................	23	3	2	0.50	1	0	0	0	1	0	0
........................ACATAGGGTCGGGAGG............................................................................................................................	16	2	15	0.07	1	0	0	0	0	1	0
............................TGGGTCGTGAGTCGGAAC......................................................................................................................	18	3	16	0.06	1	0	0	0	0	0	1

Anti-sense strand reads

CTGCTCACGGACTGGTATGGCTCATGTACCCCAGCACTCCGCCCTGTTTTCATTCACTTAGTGAGCCTTACGGAAACCAGTGACATGATTTCATGGGAAAGTTAGGGGGCTGTCATAACAATAAATGCTCCCGCCGCACCAGTACCGTGTCCGCTCCAGGGACA ************************************************............((..........((((.....((((....))))....)))).........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
......................................................................................................TGGGAGGCTATCATAACAAT..........................................	20	3	2	0.50	1	1	0	0	0	0
........................TGTACCCTAGCACTACGGCC........................................................................................................................	20	3	3	0.33	1	0	0	1	0	0
..................GGCTGAAGTACCCCAGC.................................................................................................................................	17	2	7	0.29	2	0	1	0	1	0
........................................................................................................GGGGGCTGACATGACAATT.........................................	19	3	5	0.20	1	0	1	0	0	0
.............................................................................................................CGGGCATAACAATAAAT......................................	17	2	11	0.09	1	0	1	0	0	0
....TCAGCGACTGGTATGGCAC.............................................................................................................................................	19	3	13	0.08	1	0	0	0	0	1
..............................................................................................GGGAAAGTTAAGGGGCTGGG..................................................	20	3	20	0.05	1	0	0	1	0	0

Generated: 04/23/2015 at 04:50 PM